Wall clock time and date at job start Tue Mar 31 2020 00:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99876 * 2 1 4 4 H 1.48499 * 109.47137 * 239.99936 * 3 2 1 5 5 H 1.48496 * 109.47053 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46625 * 120.00033 * 3 2 1 7 7 C 1.38804 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00531 * 163.08586 * 7 2 1 9 9 N 1.36936 * 119.99782 * 343.08514 * 7 2 1 10 10 C 1.46927 * 120.63328 * 331.83092 * 9 7 2 11 11 C 1.53186 * 108.77479 * 233.58439 * 10 9 7 12 12 C 1.53043 * 109.31437 * 305.36434 * 11 10 9 13 13 C 1.53032 * 109.53877 * 61.36566 * 12 11 10 14 14 H 1.09002 * 109.49679 * 58.58857 * 13 12 11 15 15 C 1.53000 * 109.49728 * 178.65027 * 13 12 11 16 16 N 1.46504 * 109.47125 * 184.99820 * 15 13 12 17 17 C 1.34781 * 120.00110 * 180.02562 * 16 15 13 18 18 O 1.21613 * 119.99942 * 0.02562 * 17 16 15 19 19 C 1.47376 * 119.99792 * 180.02562 * 17 16 15 20 20 C 1.47024 * 127.18868 * 179.97438 * 19 17 16 21 21 C 1.34177 * 105.95294 * 179.97438 * 20 19 17 22 22 O 1.34212 * 109.12399 * 0.02562 * 21 20 19 23 23 C 1.33651 * 110.91063 * 359.76208 * 22 21 20 24 24 C 1.46933 * 120.63148 * 151.54973 * 9 7 2 25 25 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.58266 * 353.37584 * 10 9 7 27 27 H 1.09008 * 109.58073 * 113.65523 * 10 9 7 28 28 H 1.08996 * 109.50109 * 65.31494 * 11 10 9 29 29 H 1.09007 * 109.49432 * 185.38366 * 11 10 9 30 30 H 1.09003 * 109.45993 * 181.38826 * 12 11 10 31 31 H 1.08997 * 109.45947 * 301.35843 * 12 11 10 32 32 H 1.09001 * 109.47453 * 305.00130 * 15 13 12 33 33 H 1.09005 * 109.46984 * 65.00208 * 15 13 12 34 34 H 0.96996 * 119.99820 * 0.02562 * 16 15 13 35 35 H 1.07996 * 127.02455 * 359.94056 * 20 19 17 36 36 H 1.08000 * 125.43506 * 179.97438 * 21 20 19 37 37 H 1.07999 * 125.80334 * 180.27487 * 23 22 21 38 38 H 1.08998 * 109.58974 * 246.20756 * 24 9 7 39 39 H 1.09003 * 109.58500 * 6.62795 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2225 -0.2716 9 7 1.3700 -2.3621 0.3461 10 6 0.2261 -2.3399 1.2679 11 6 0.4974 -3.3193 2.4141 12 6 0.8119 -4.7009 1.8358 13 6 2.0672 -4.6174 0.9645 14 1 2.9022 -4.2538 1.5634 15 6 2.3999 -6.0056 0.4140 16 7 3.6660 -5.9489 -0.3210 17 6 4.1608 -7.0620 -0.8979 18 8 3.5560 -8.1133 -0.8088 19 6 5.4347 -7.0050 -1.6367 20 6 6.1151 -8.1138 -2.3217 21 6 7.2323 -7.5909 -2.8498 22 8 7.2902 -6.2839 -2.5506 23 6 6.2266 -5.9115 -1.8320 24 6 1.8101 -3.6522 -0.2026 25 1 -0.4850 0.8400 -0.0004 26 1 0.0993 -1.3343 1.6686 27 1 -0.6775 -2.6380 0.7359 28 1 1.3472 -2.9679 2.9994 29 1 -0.3830 -3.3838 3.0535 30 1 0.9812 -5.4055 2.6500 31 1 -0.0282 -5.0408 1.2302 32 1 2.4903 -6.7118 1.2394 33 1 1.6047 -6.3306 -0.2569 34 1 4.1482 -5.1103 -0.3923 35 1 5.7837 -9.1396 -2.3862 36 1 7.9680 -8.1353 -3.4233 37 1 6.0285 -4.9147 -1.4667 38 1 1.0336 -4.0574 -0.8513 39 1 2.7289 -3.5126 -0.7723 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359706191.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:03 Heat of formation + Delta-G solvation = -10.411904 kcal Electronic energy + Delta-G solvation = -21425.361626 eV Core-core repulsion = 18141.865879 eV Total energy + Delta-G solvation = -3283.495747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.68668 -39.44008 -37.73975 -34.82575 -33.22444 -32.80599 -30.73083 -30.46156 -29.61163 -25.77285 -25.29075 -23.30961 -22.07356 -21.64044 -20.95209 -20.11744 -19.15185 -18.40233 -16.73678 -16.31013 -16.19686 -15.64915 -15.17183 -14.93159 -14.77311 -14.14619 -13.71994 -13.46084 -13.37811 -13.08357 -12.82036 -12.59524 -12.31661 -12.24463 -12.18875 -11.31136 -11.03757 -10.73078 -10.53745 -10.28288 -10.21083 -10.06377 -9.97371 -9.92649 -9.59742 -9.45015 -9.06955 -8.87981 -8.49423 -6.70460 -5.82379 -3.26044 1.22479 1.91633 2.74748 3.24066 3.34740 3.37856 3.41366 3.41599 4.43207 4.45134 4.54135 4.92323 5.08245 5.27032 5.34704 5.41315 5.44222 5.48958 5.59517 5.73562 5.81347 5.93776 5.98323 6.09965 6.21634 6.30169 6.34791 6.47841 6.56369 6.68000 6.74549 6.76299 6.83628 6.93532 7.37214 7.57056 7.64619 7.74414 8.26742 8.41088 9.17132 9.80581 10.37779 11.25728 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018035 B = 0.004330 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.191016 B = 6464.989878 C = 7788.875726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.257 4.257 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.141 4.141 12 C -0.100 4.100 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.128 3.872 16 N -0.719 5.719 17 C 0.584 3.416 18 O -0.543 6.543 19 C -0.234 4.234 20 C -0.166 4.166 21 C -0.044 4.044 22 O -0.175 6.175 23 C 0.023 3.977 24 C 0.154 3.846 25 H 0.255 0.745 26 H 0.086 0.914 27 H 0.018 0.982 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.400 0.600 35 H 0.158 0.842 36 H 0.208 0.792 37 H 0.213 0.787 38 H 0.020 0.980 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.841 -12.065 -1.203 16.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.386 4.386 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.180 4.180 12 C -0.138 4.138 13 C -0.139 4.139 14 H 0.092 0.908 15 C 0.004 3.996 16 N -0.370 5.370 17 C 0.371 3.629 18 O -0.422 6.422 19 C -0.239 4.239 20 C -0.185 4.185 21 C -0.110 4.110 22 O -0.070 6.070 23 C -0.047 4.047 24 C 0.027 3.973 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.036 0.964 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.235 0.765 35 H 0.176 0.824 36 H 0.224 0.776 37 H 0.230 0.770 38 H 0.037 0.963 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.495 -12.463 -1.237 16.340 hybrid contribution 0.448 1.142 -0.009 1.227 sum 10.943 -11.321 -1.246 15.795 Atomic orbital electron populations 1.70026 1.05298 1.25675 1.53509 1.25049 0.95260 0.98418 1.00724 0.86384 0.78946 0.83403 0.78102 1.20881 1.21606 1.21013 1.19104 0.92442 0.84848 1.42224 0.91821 1.44044 1.36013 1.01370 1.49944 1.20796 0.88537 0.98292 0.88052 1.22165 1.00114 0.95953 0.99817 1.21338 0.96719 0.97756 0.97965 1.22041 0.98896 0.93524 0.99408 0.90829 1.21491 0.84496 0.98112 0.95452 1.45926 1.25009 1.11272 1.54838 1.17268 0.83512 0.83817 0.78292 1.90768 1.60598 1.29862 1.60970 1.21602 0.99078 0.94762 1.08433 1.22784 0.95102 1.00071 1.00588 1.23935 1.01070 0.81292 1.04729 1.83799 1.40702 1.26372 1.56099 1.24562 0.85698 0.99659 0.94810 1.20989 0.97467 0.86869 0.91997 0.93528 0.89600 0.96427 0.92752 0.93167 0.93405 0.92438 0.91832 0.91419 0.76505 0.82393 0.77569 0.77027 0.96252 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.70 11.20 55.49 0.62 -25.08 16 2 C 0.00 0.12 4.92 -17.43 -0.09 0.04 16 3 Si 0.90 21.10 29.59 -169.99 -5.03 16.07 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.26 -6.78 9.58 -15.06 -0.14 -6.92 16 8 H 0.06 1.62 7.89 -52.48 -0.41 1.21 16 9 N -0.59 -14.23 2.99 -172.05 -0.51 -14.75 16 10 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16 11 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 12 C -0.10 -1.61 5.16 -26.69 -0.14 -1.75 16 13 C -0.12 -1.89 2.38 -90.28 -0.22 -2.10 16 14 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 15 C 0.13 1.86 5.07 -4.04 -0.02 1.84 16 16 N -0.72 -9.65 5.32 -61.39 -0.33 -9.97 16 17 C 0.58 8.68 7.81 -12.54 -0.10 8.58 16 18 O -0.54 -9.99 16.98 5.27 0.09 -9.90 16 19 C -0.23 -2.89 6.31 -103.28 -0.65 -3.55 16 20 C -0.17 -1.80 11.01 -37.45 -0.41 -2.21 16 21 C -0.04 -0.38 12.03 29.30 0.35 -0.02 16 22 O -0.17 -1.72 10.52 7.67 0.08 -1.64 16 23 C 0.02 0.23 11.61 30.07 0.35 0.58 16 24 C 0.15 3.01 5.63 -3.48 -0.02 3.00 16 25 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 27 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.40 4.58 6.69 -40.82 -0.27 4.31 16 35 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.21 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.21 1.45 7.47 -52.49 -0.39 1.05 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 0.92 7.16 -51.93 -0.37 0.54 16 LS Contribution 323.80 15.07 4.88 4.88 Total: -1.00 -32.45 323.80 -7.02 -39.47 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.55 Total: 2.31 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.27 Total: -1.38 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.22 Total: -49.80 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.17 Total: -11.54 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.45 -7.02 -39.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359706191.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.054 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds