Wall clock time and date at job start Tue Mar 31 2020 00:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47027 * 331.93308 * 3 2 1 5 5 C 1.37103 * 119.99740 * 264.09386 * 4 3 2 6 6 H 1.08003 * 119.99355 * 197.94832 * 5 4 3 7 7 C 1.38946 * 119.99978 * 18.23031 * 5 4 3 8 8 N 1.31408 * 120.00329 * 18.12034 * 7 5 4 9 9 Si 1.86804 * 119.99540 * 198.12212 * 7 5 4 10 10 H 1.48504 * 109.47201 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47220 * 119.99901 * 9 7 5 12 12 H 1.48501 * 109.47211 * 239.99615 * 9 7 5 13 13 C 1.34775 * 119.99978 * 84.09392 * 4 3 2 14 14 O 1.21292 * 120.00151 * 184.95903 * 13 4 3 15 15 C 1.50699 * 120.00035 * 4.96889 * 13 4 3 16 16 H 1.09009 * 109.47979 * 331.41272 * 15 13 4 17 17 C 1.52659 * 109.48152 * 211.38403 * 15 13 4 18 18 C 1.54030 * 110.39811 * 166.48200 * 17 15 13 19 19 C 1.52458 * 111.04145 * 315.21741 * 18 17 15 20 20 C 1.54106 * 109.29731 * 114.21860 * 19 18 17 21 21 C 1.52049 * 109.16264 * 281.97764 * 20 19 18 22 22 C 1.51109 * 109.11085 * 72.61455 * 21 20 19 23 23 O 1.20758 * 120.42444 * 68.82772 * 22 21 20 24 24 C 1.49501 * 119.15724 * 248.84645 * 22 21 20 25 25 H 1.09005 * 109.46800 * 211.93367 * 3 2 1 26 26 H 1.08998 * 109.47085 * 91.93723 * 3 2 1 27 27 H 0.97003 * 120.00055 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.31378 * 286.77108 * 17 15 13 29 29 H 1.09006 * 109.31052 * 46.20315 * 17 15 13 30 30 H 1.09003 * 109.16601 * 194.81007 * 18 17 15 31 31 H 1.08999 * 109.16193 * 75.61854 * 18 17 15 32 32 H 1.08998 * 109.50254 * 354.26687 * 19 18 17 33 33 H 1.09004 * 109.50008 * 234.15829 * 19 18 17 34 34 H 1.08999 * 109.52063 * 162.07558 * 20 19 18 35 35 H 1.09001 * 109.51953 * 41.88511 * 20 19 18 36 36 H 1.08997 * 109.53429 * 312.72220 * 21 20 19 37 37 H 1.08997 * 109.58567 * 192.53524 * 21 20 19 38 38 H 1.09005 * 109.79904 * 283.45271 * 24 22 21 39 39 H 1.08991 * 109.84962 * 162.61695 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.2180 0.6499 5 6 3.4406 -1.1964 1.9770 6 1 4.0603 -1.9802 2.3870 7 6 2.9867 -0.1695 2.7956 8 7 1.9665 0.5684 2.4196 9 14 3.8270 0.1620 4.4307 10 1 4.9408 -0.8019 4.6193 11 1 4.3632 1.5468 4.4399 12 1 2.8446 0.0043 5.5331 13 6 3.2088 -2.3601 -0.0568 14 8 3.5271 -3.3894 0.5004 15 6 2.9387 -2.3584 -1.5394 16 1 2.2199 -1.5740 -1.7770 17 6 2.3703 -3.7129 -1.9549 18 6 1.7759 -3.6333 -3.3737 19 6 0.9318 -2.3751 -3.5437 20 6 1.6024 -1.4476 -4.5757 21 6 2.7626 -0.7209 -3.9141 22 6 3.8961 -1.6957 -3.6943 23 8 4.5088 -2.1431 -4.6338 24 6 4.2493 -2.0995 -2.2989 25 1 2.9709 0.8730 0.5436 26 1 2.9713 0.0356 -1.0271 27 1 1.6500 1.2856 2.9909 28 1 3.1657 -4.4580 -1.9385 29 1 1.5899 -4.0070 -1.2530 30 1 1.1518 -4.5094 -3.5499 31 1 2.5872 -3.6209 -4.1014 32 1 0.8524 -1.8582 -2.5874 33 1 -0.0635 -2.6491 -3.8935 34 1 0.8759 -0.7201 -4.9378 35 1 1.9732 -2.0407 -5.4117 36 1 2.4395 -0.3155 -2.9553 37 1 3.1000 0.0911 -4.5581 38 1 4.8058 -1.2985 -1.8123 39 1 4.8507 -3.0082 -2.3176 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362726919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:38 Heat of formation + Delta-G solvation = -45.448700 kcal Electronic energy + Delta-G solvation = -22997.776337 eV Core-core repulsion = 19712.761281 eV Total energy + Delta-G solvation = -3285.015056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.54116 -38.79759 -36.57364 -35.86543 -34.42447 -33.18891 -31.94428 -31.33353 -27.61249 -26.45269 -26.22985 -24.43256 -22.23574 -20.53931 -19.40110 -18.54543 -17.97162 -17.12519 -16.31012 -15.75024 -15.61948 -15.08606 -14.61314 -14.33753 -14.22545 -13.88169 -13.73418 -13.30923 -13.22938 -13.07569 -12.22311 -12.20462 -12.15636 -11.85020 -11.72607 -11.49293 -11.44862 -11.21427 -11.12514 -10.98060 -10.67053 -10.62902 -10.43985 -10.38364 -10.14757 -10.14036 -9.50771 -9.33581 -8.55127 -8.11687 -6.55781 -4.07761 2.01843 3.04123 3.18670 3.24196 3.44855 3.69068 3.90134 4.04437 4.15634 4.58131 4.68638 4.82596 4.86281 4.89372 5.03415 5.11382 5.18513 5.23724 5.25080 5.46140 5.51389 5.61996 5.73843 5.76376 5.87081 5.91973 5.97359 6.02121 6.06441 6.19286 6.22926 6.32295 6.45870 6.53659 6.55708 7.40664 7.56356 7.82877 8.21418 8.65449 8.93633 9.12337 9.66053 10.49841 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023371 B = 0.006112 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.780122 B = 4580.319323 C = 4909.668692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.243 3.757 3 C 0.219 3.781 4 N -0.443 5.443 5 C -0.310 4.310 6 H 0.109 0.891 7 C 0.031 3.969 8 N -0.881 5.881 9 Si 0.929 3.071 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.283 1.283 13 C 0.461 3.539 14 O -0.568 6.568 15 C -0.109 4.109 16 H 0.097 0.903 17 C -0.101 4.101 18 C -0.130 4.130 19 C -0.135 4.135 20 C -0.110 4.110 21 C -0.179 4.179 22 C 0.374 3.626 23 O -0.467 6.467 24 C -0.162 4.162 25 H 0.132 0.868 26 H 0.079 0.921 27 H 0.273 0.727 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.811 1.097 -10.838 11.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.075 4.075 3 C 0.091 3.909 4 N -0.163 5.163 5 C -0.437 4.437 6 H 0.126 0.874 7 C -0.172 4.172 8 N -0.520 5.520 9 Si 0.755 3.245 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.209 1.209 13 C 0.249 3.751 14 O -0.449 6.449 15 C -0.131 4.131 16 H 0.115 0.885 17 C -0.138 4.138 18 C -0.167 4.167 19 C -0.172 4.172 20 C -0.147 4.147 21 C -0.217 4.217 22 C 0.251 3.749 23 O -0.341 6.341 24 C -0.200 4.200 25 H 0.150 0.850 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.126 0.874 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.528 0.493 -10.941 10.965 hybrid contribution 0.521 0.477 1.166 1.363 sum 1.049 0.970 -9.776 9.880 Atomic orbital electron populations 1.80915 1.13474 1.08674 1.11733 1.29299 0.95354 0.92530 0.90352 1.18810 0.81715 0.93112 0.97256 1.43668 1.56602 1.06012 1.10053 1.19807 1.29364 1.11050 0.83524 0.87352 1.25291 0.95018 0.97096 0.99825 1.69811 1.21637 1.21357 1.39241 0.85817 0.79326 0.78388 0.80961 1.19108 1.20424 1.20858 1.20002 0.83577 0.83614 0.87924 1.90552 1.51539 1.31105 1.71747 1.21583 0.96862 1.00474 0.94158 0.88526 1.21551 1.00951 0.95789 0.95559 1.21871 0.99377 0.98057 0.97400 1.21977 0.98986 0.96350 0.99875 1.21604 0.96107 0.98829 0.98169 1.22220 0.96533 0.99224 1.03712 1.24397 0.81590 0.78420 0.90526 1.90379 1.48807 1.49253 1.45674 1.22168 0.98727 1.04830 0.94316 0.85043 0.90373 0.91600 0.90862 0.91262 0.91657 0.91893 0.90569 0.91585 0.90870 0.91092 0.89070 0.88732 0.87437 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.46 18.54 42.16 0.78 -9.68 16 2 C 0.24 5.03 12.93 -20.76 -0.27 4.76 16 3 C 0.22 4.04 4.77 -6.83 -0.03 4.00 16 4 N -0.44 -9.72 2.60 -117.93 -0.31 -10.03 16 5 C -0.31 -7.65 9.32 -14.93 -0.14 -7.79 16 6 H 0.11 2.84 7.41 -52.48 -0.39 2.45 16 7 C 0.03 0.73 4.95 -17.47 -0.09 0.65 16 8 N -0.88 -21.30 9.31 55.50 0.52 -20.79 16 9 Si 0.93 19.07 29.59 -169.99 -5.03 14.04 16 10 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 11 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 12 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 13 C 0.46 9.78 6.49 -10.99 -0.07 9.71 16 14 O -0.57 -14.23 16.07 5.55 0.09 -14.14 16 15 C -0.11 -1.75 1.26 -91.60 -0.12 -1.87 16 16 H 0.10 1.44 1.38 -51.92 -0.07 1.37 16 17 C -0.10 -1.56 4.50 -26.37 -0.12 -1.68 16 18 C -0.13 -1.66 5.37 -26.47 -0.14 -1.80 16 19 C -0.13 -1.62 5.51 -26.43 -0.15 -1.76 16 20 C -0.11 -1.16 5.63 -26.64 -0.15 -1.31 16 21 C -0.18 -1.94 5.45 -28.17 -0.15 -2.09 16 22 C 0.37 4.91 4.16 -29.41 -0.12 4.79 16 23 O -0.47 -7.31 17.42 6.00 0.10 -7.20 16 24 C -0.16 -2.27 5.06 -28.11 -0.14 -2.41 16 25 H 0.13 2.51 6.38 -51.93 -0.33 2.18 16 26 H 0.08 1.08 5.31 -51.93 -0.28 0.80 16 27 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 28 H 0.07 1.16 7.87 -51.93 -0.41 0.75 16 29 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.82 5.66 -51.93 -0.29 0.53 16 32 H 0.08 1.04 5.52 -51.93 -0.29 0.76 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.77 7.56 -51.93 -0.39 0.38 16 36 H 0.09 0.95 4.98 -51.93 -0.26 0.69 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.11 1.38 8.04 -51.93 -0.42 0.96 16 39 H 0.10 1.45 7.85 -51.93 -0.41 1.04 16 LS Contribution 307.15 15.07 4.63 4.63 Total: -1.00 -30.04 307.15 -5.68 -35.73 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -4.78 Total: 4.26 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -1.69 Total: 3.19 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.99 Total: -40.50 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.19 Total: -21.35 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.04 -5.68 -35.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362726919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.722 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds