Wall clock time and date at job start Tue Mar 31 2020 00:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47027 * 331.93308 * 3 2 1 5 5 C 1.37103 * 119.99740 * 264.09386 * 4 3 2 6 6 H 1.08003 * 119.99355 * 197.94832 * 5 4 3 7 7 C 1.38946 * 119.99978 * 18.23031 * 5 4 3 8 8 N 1.31408 * 120.00329 * 18.12034 * 7 5 4 9 9 Si 1.86804 * 119.99540 * 198.12212 * 7 5 4 10 10 H 1.48504 * 109.47201 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47220 * 119.99901 * 9 7 5 12 12 H 1.48501 * 109.47211 * 239.99615 * 9 7 5 13 13 C 1.34775 * 119.99978 * 84.09392 * 4 3 2 14 14 O 1.21292 * 120.00151 * 184.95903 * 13 4 3 15 15 C 1.50699 * 120.00035 * 4.96889 * 13 4 3 16 16 H 1.09009 * 109.47979 * 331.41272 * 15 13 4 17 17 C 1.52659 * 109.48152 * 211.38403 * 15 13 4 18 18 C 1.54030 * 110.39811 * 166.48200 * 17 15 13 19 19 C 1.52458 * 111.04145 * 315.21741 * 18 17 15 20 20 C 1.54106 * 109.29731 * 114.21860 * 19 18 17 21 21 C 1.52049 * 109.16264 * 281.97764 * 20 19 18 22 22 C 1.51109 * 109.11085 * 72.61455 * 21 20 19 23 23 O 1.20758 * 120.42444 * 68.82772 * 22 21 20 24 24 C 1.49501 * 119.15724 * 248.84645 * 22 21 20 25 25 H 1.09005 * 109.46800 * 211.93367 * 3 2 1 26 26 H 1.08998 * 109.47085 * 91.93723 * 3 2 1 27 27 H 0.97003 * 120.00055 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.31378 * 286.77108 * 17 15 13 29 29 H 1.09006 * 109.31052 * 46.20315 * 17 15 13 30 30 H 1.09003 * 109.16601 * 194.81007 * 18 17 15 31 31 H 1.08999 * 109.16193 * 75.61854 * 18 17 15 32 32 H 1.08998 * 109.50254 * 354.26687 * 19 18 17 33 33 H 1.09004 * 109.50008 * 234.15829 * 19 18 17 34 34 H 1.08999 * 109.52063 * 162.07558 * 20 19 18 35 35 H 1.09001 * 109.51953 * 41.88511 * 20 19 18 36 36 H 1.08997 * 109.53429 * 312.72220 * 21 20 19 37 37 H 1.08997 * 109.58567 * 192.53524 * 21 20 19 38 38 H 1.09005 * 109.79904 * 283.45271 * 24 22 21 39 39 H 1.08991 * 109.84962 * 162.61695 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.2180 0.6499 5 6 3.4406 -1.1964 1.9770 6 1 4.0603 -1.9802 2.3870 7 6 2.9867 -0.1695 2.7956 8 7 1.9665 0.5684 2.4196 9 14 3.8270 0.1620 4.4307 10 1 4.9408 -0.8019 4.6193 11 1 4.3632 1.5468 4.4399 12 1 2.8446 0.0043 5.5331 13 6 3.2088 -2.3601 -0.0568 14 8 3.5271 -3.3894 0.5004 15 6 2.9387 -2.3584 -1.5394 16 1 2.2199 -1.5740 -1.7770 17 6 2.3703 -3.7129 -1.9549 18 6 1.7759 -3.6333 -3.3737 19 6 0.9318 -2.3751 -3.5437 20 6 1.6024 -1.4476 -4.5757 21 6 2.7626 -0.7209 -3.9141 22 6 3.8961 -1.6957 -3.6943 23 8 4.5088 -2.1431 -4.6338 24 6 4.2493 -2.0995 -2.2989 25 1 2.9709 0.8730 0.5436 26 1 2.9713 0.0356 -1.0271 27 1 1.6500 1.2856 2.9909 28 1 3.1657 -4.4580 -1.9385 29 1 1.5899 -4.0070 -1.2530 30 1 1.1518 -4.5094 -3.5499 31 1 2.5872 -3.6209 -4.1014 32 1 0.8524 -1.8582 -2.5874 33 1 -0.0635 -2.6491 -3.8935 34 1 0.8759 -0.7201 -4.9378 35 1 1.9732 -2.0407 -5.4117 36 1 2.4395 -0.3155 -2.9553 37 1 3.1000 0.0911 -4.5581 38 1 4.8058 -1.2985 -1.8123 39 1 4.8507 -3.0082 -2.3176 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362726919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:37 Heat of formation + Delta-G solvation = -62.784901 kcal Electronic energy + Delta-G solvation = -22998.528091 eV Core-core repulsion = 19712.761281 eV Total energy + Delta-G solvation = -3285.766810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.78824 -40.28100 -37.84649 -37.48461 -36.15552 -34.42258 -33.59826 -32.49181 -29.25616 -27.75555 -27.43950 -25.93893 -23.36035 -21.77985 -20.65022 -19.86536 -19.65113 -18.59394 -17.91797 -17.01833 -16.90863 -16.36047 -16.06349 -15.79585 -15.42191 -15.18299 -14.85334 -14.75226 -14.72089 -14.58064 -13.79843 -13.53596 -13.41945 -13.20016 -13.08693 -13.01814 -12.92689 -12.58740 -12.40214 -12.34347 -12.09072 -12.07537 -11.97509 -11.67947 -11.30782 -11.21339 -11.11031 -10.69846 -10.17372 -9.92376 -8.39058 -5.97214 0.96525 1.38595 1.49592 1.60850 1.79061 2.04517 2.26596 2.36074 2.96398 3.02429 3.20952 3.51295 3.65469 3.74166 3.86468 3.91145 3.99437 4.13099 4.20853 4.25799 4.41510 4.55478 4.56914 4.67137 4.77405 4.87847 4.88008 4.95470 4.96655 5.12396 5.16221 5.21323 5.29798 5.31005 5.48043 5.49328 6.03698 6.40358 6.52861 7.00970 7.12623 7.34656 7.91328 8.64041 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023371 B = 0.006112 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.780122 B = 4580.319323 C = 4909.668692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C 0.253 3.747 3 C 0.218 3.782 4 N -0.453 5.453 5 C -0.337 4.337 6 H 0.082 0.918 7 C 0.006 3.994 8 N -0.893 5.893 9 Si 0.985 3.015 10 H -0.273 1.273 11 H -0.262 1.262 12 H -0.290 1.290 13 C 0.455 3.545 14 O -0.615 6.615 15 C -0.095 4.095 16 H 0.113 0.887 17 C -0.101 4.101 18 C -0.121 4.121 19 C -0.136 4.136 20 C -0.106 4.106 21 C -0.178 4.178 22 C 0.384 3.616 23 O -0.491 6.491 24 C -0.163 4.163 25 H 0.130 0.870 26 H 0.131 0.869 27 H 0.275 0.725 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.719 2.679 -12.347 12.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.065 4.065 3 C 0.092 3.908 4 N -0.172 5.172 5 C -0.465 4.465 6 H 0.100 0.900 7 C -0.196 4.196 8 N -0.532 5.532 9 Si 0.810 3.190 10 H -0.197 1.197 11 H -0.186 1.186 12 H -0.217 1.217 13 C 0.245 3.755 14 O -0.500 6.500 15 C -0.116 4.116 16 H 0.131 0.869 17 C -0.139 4.139 18 C -0.158 4.158 19 C -0.173 4.173 20 C -0.144 4.144 21 C -0.216 4.216 22 C 0.262 3.738 23 O -0.367 6.367 24 C -0.201 4.201 25 H 0.148 0.852 26 H 0.148 0.852 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.426 2.105 -12.468 12.651 hybrid contribution 0.537 -0.080 1.677 1.763 sum 0.963 2.025 -10.791 11.021 Atomic orbital electron populations 1.80918 1.14467 1.09623 1.12845 1.29692 0.95747 0.91611 0.89401 1.19133 0.80396 0.91481 0.99823 1.43824 1.56488 1.07387 1.09538 1.19690 1.30262 1.11209 0.85331 0.90028 1.25849 0.95121 0.96443 1.02145 1.69885 1.21884 1.21390 1.40064 0.84988 0.77969 0.78739 0.77313 1.19726 1.18634 1.21703 1.20903 0.81963 0.82710 0.89953 1.90519 1.53364 1.32824 1.73274 1.21495 0.98375 1.01345 0.90408 0.86916 1.21545 1.00046 0.95289 0.97018 1.21816 0.99601 0.99417 0.95002 1.21992 0.99723 0.95924 0.99639 1.21614 0.96277 0.98981 0.97493 1.22290 0.95422 0.99137 1.04728 1.24485 0.81741 0.78279 0.89272 1.90386 1.49874 1.50455 1.45983 1.22185 0.97487 1.05154 0.95246 0.85243 0.85167 0.91470 0.91893 0.93545 0.90520 0.91811 0.92198 0.90296 0.88606 0.91089 0.88485 0.86162 0.85965 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -21.75 18.54 20.01 0.37 -21.38 16 2 C 0.25 10.14 12.93 89.44 1.16 11.30 16 3 C 0.22 7.70 4.77 84.57 0.40 8.10 16 4 N -0.45 -19.84 2.60 -645.40 -1.68 -21.52 16 5 C -0.34 -16.90 9.32 84.04 0.78 -16.11 16 6 H 0.08 4.46 7.41 -2.91 -0.02 4.43 16 7 C 0.01 0.30 4.95 84.93 0.42 0.72 16 8 N -0.89 -42.52 9.31 21.66 0.20 -42.32 16 9 Si 0.99 38.91 29.59 68.60 2.03 40.94 16 10 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 11 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 12 H -0.29 -11.83 7.11 99.48 0.71 -11.13 16 13 C 0.45 19.52 6.49 87.66 0.57 20.09 16 14 O -0.61 -32.00 16.07 -3.07 -0.05 -32.05 16 15 C -0.10 -2.97 1.26 -11.43 -0.01 -2.98 16 16 H 0.11 3.15 1.38 -2.38 0.00 3.15 16 17 C -0.10 -3.14 4.50 30.83 0.14 -3.00 16 18 C -0.12 -2.91 5.37 30.76 0.17 -2.74 16 19 C -0.14 -2.90 5.51 30.79 0.17 -2.73 16 20 C -0.11 -1.86 5.63 30.65 0.17 -1.69 16 21 C -0.18 -3.18 5.45 29.66 0.16 -3.02 16 22 C 0.38 9.11 4.16 28.86 0.12 9.23 16 23 O -0.49 -14.32 17.42 -1.44 -0.03 -14.35 16 24 C -0.16 -4.31 5.06 29.70 0.15 -4.16 16 25 H 0.13 4.72 6.38 -2.38 -0.02 4.70 16 26 H 0.13 3.17 5.31 -2.39 -0.01 3.15 16 27 H 0.28 12.64 8.31 -92.71 -0.77 11.87 16 28 H 0.06 2.05 7.87 -2.39 -0.02 2.03 16 29 H 0.05 1.63 8.06 -2.38 -0.02 1.61 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.55 5.66 -2.39 -0.01 1.54 16 32 H 0.06 1.50 5.52 -2.39 -0.01 1.49 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.30 7.56 -2.39 -0.02 1.28 16 36 H 0.10 1.62 4.98 -2.39 -0.01 1.61 16 37 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.12 2.88 8.04 -2.38 -0.02 2.86 16 39 H 0.09 2.57 7.85 -2.39 -0.02 2.55 16 Total: -1.00 -65.92 307.15 6.33 -59.58 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 1.09 Total: 18.07 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 4.40 Total: 13.01 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -1.11 Total: -85.21 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -0.07 Total: -46.39 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -65.92 6.33 -59.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362726919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.203 kcal (2) G-P(sol) polarization free energy of solvation -65.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds