Wall clock time and date at job start Tue Mar 31 2020 00:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46734 * 130.65525 * 3 2 1 5 5 C 1.37110 * 119.99954 * 96.68866 * 4 3 2 6 6 H 1.07997 * 119.99565 * 167.99073 * 5 4 3 7 7 C 1.38943 * 119.99791 * 347.98353 * 5 4 3 8 8 N 1.31415 * 120.00602 * 345.12796 * 7 5 4 9 9 Si 1.86803 * 119.99772 * 165.40457 * 7 5 4 10 10 H 1.48500 * 109.47226 * 269.72724 * 9 7 5 11 11 H 1.48496 * 109.47003 * 29.72557 * 9 7 5 12 12 H 1.48501 * 109.47226 * 149.72451 * 9 7 5 13 13 C 1.34770 * 119.99883 * 276.68275 * 4 3 2 14 14 O 1.21288 * 120.00111 * 356.32602 * 13 4 3 15 15 C 1.50699 * 119.99902 * 176.32883 * 13 4 3 16 16 H 1.08996 * 109.48258 * 46.20477 * 15 13 4 17 17 C 1.52669 * 109.48216 * 166.22820 * 15 13 4 18 18 C 1.54024 * 110.40277 * 193.53037 * 17 15 13 19 19 C 1.52455 * 111.05254 * 44.78821 * 18 17 15 20 20 C 1.54100 * 109.26936 * 245.78380 * 19 18 17 21 21 C 1.52048 * 109.16269 * 77.99971 * 20 19 18 22 22 C 1.51110 * 109.14895 * 287.37424 * 21 20 19 23 23 O 1.20765 * 120.42637 * 291.13211 * 22 21 20 24 24 C 1.49506 * 119.14527 * 111.14718 * 22 21 20 25 25 H 1.08999 * 109.47328 * 10.65152 * 3 2 1 26 26 H 1.09007 * 109.46926 * 250.65238 * 3 2 1 27 27 H 0.96993 * 120.00273 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.31157 * 313.81561 * 17 15 13 29 29 H 1.08998 * 109.31169 * 73.24045 * 17 15 13 30 30 H 1.09000 * 109.16360 * 165.19470 * 18 17 15 31 31 H 1.09003 * 109.16351 * 284.38288 * 18 17 15 32 32 H 1.09006 * 109.50302 * 5.72574 * 19 18 17 33 33 H 1.08994 * 109.50454 * 125.84589 * 19 18 17 34 34 H 1.08999 * 109.52183 * 197.90562 * 20 19 18 35 35 H 1.09002 * 109.52144 * 318.09760 * 20 19 18 36 36 H 1.09000 * 109.52740 * 47.28094 * 21 20 19 37 37 H 1.08999 * 109.52129 * 167.41077 * 21 20 19 38 38 H 1.08996 * 109.80163 * 197.42393 * 24 22 21 39 39 H 1.09004 * 109.79425 * 76.56271 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 0.9008 -1.0479 5 6 3.4541 2.1867 -0.7349 6 1 3.9912 2.7877 -1.4537 7 6 3.1260 2.7166 0.5069 8 7 2.2357 2.1152 1.2636 9 14 3.9449 4.2882 1.0976 10 1 5.1791 3.9503 1.8512 11 1 4.2950 5.1337 -0.0719 12 1 3.0117 5.0300 1.9831 13 6 3.1925 0.4648 -2.3194 14 8 2.9395 -0.6913 -2.5851 15 6 3.6152 1.4136 -3.4113 16 1 4.4829 1.9846 -3.0809 17 6 3.9752 0.6198 -4.6646 18 6 4.7224 1.5149 -5.6710 19 6 5.7898 2.3505 -4.9734 20 6 5.4081 3.8408 -5.0631 21 6 4.3311 4.1430 -4.0333 22 6 3.0255 3.5331 -4.4879 23 8 2.4463 3.9756 -5.4509 24 6 2.4597 2.3752 -3.7301 25 1 2.9718 -1.0091 -0.1899 26 1 2.9711 0.3413 0.9697 27 1 2.0070 2.4849 2.1306 28 1 4.6114 -0.2211 -4.3883 29 1 3.0630 0.2417 -5.1262 30 1 5.1962 0.8869 -6.4255 31 1 4.0086 2.1799 -6.1572 32 1 5.8572 2.0544 -3.9265 33 1 6.7521 2.1914 -5.4599 34 1 6.2864 4.4544 -4.8625 35 1 5.0294 4.0603 -6.0614 36 1 4.6168 3.7171 -3.0715 37 1 4.2150 5.2222 -3.9337 38 1 1.7123 1.8656 -4.3382 39 1 2.0057 2.7268 -2.8036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362726922.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:40 Heat of formation + Delta-G solvation = -46.763564 kcal Electronic energy + Delta-G solvation = -22997.066238 eV Core-core repulsion = 19711.994165 eV Total energy + Delta-G solvation = -3285.072073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.36137 -38.75420 -36.54680 -35.60281 -34.55660 -33.06093 -31.80007 -31.27125 -27.92281 -26.25158 -25.68690 -24.49423 -22.10267 -20.40715 -19.36244 -18.72623 -17.81170 -16.91408 -16.32124 -15.51600 -15.38775 -14.89786 -14.57334 -14.36329 -14.17903 -13.80789 -13.58808 -13.38872 -13.11098 -12.75475 -12.27801 -12.09889 -11.86411 -11.81489 -11.54216 -11.43042 -11.32429 -11.30511 -11.05533 -10.84209 -10.70832 -10.56522 -10.46925 -10.34206 -10.03623 -9.96890 -9.46165 -9.33417 -8.57643 -8.23255 -6.62309 -4.21377 2.24361 2.95552 3.06408 3.10323 3.47829 3.71957 3.96611 4.13019 4.36656 4.65948 4.75367 4.83808 4.95818 5.03552 5.25554 5.33530 5.38963 5.42457 5.49594 5.60550 5.73569 5.78102 5.90150 5.98176 6.04547 6.09297 6.12679 6.21818 6.30111 6.40630 6.43889 6.48091 6.66369 6.68285 6.80939 7.14531 7.37104 7.78952 8.06921 8.78096 8.83306 9.15576 9.56047 10.37529 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015560 B = 0.008012 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.000456 B = 3493.981606 C = 4426.056846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.256 3.744 3 C 0.219 3.781 4 N -0.441 5.441 5 C -0.337 4.337 6 H 0.107 0.893 7 C 0.037 3.963 8 N -0.871 5.871 9 Si 0.923 3.077 10 H -0.273 1.273 11 H -0.267 1.267 12 H -0.283 1.283 13 C 0.467 3.533 14 O -0.594 6.594 15 C -0.091 4.091 16 H 0.107 0.893 17 C -0.102 4.102 18 C -0.130 4.130 19 C -0.133 4.133 20 C -0.109 4.109 21 C -0.180 4.180 22 C 0.378 3.622 23 O -0.475 6.475 24 C -0.163 4.163 25 H 0.083 0.917 26 H 0.148 0.852 27 H 0.276 0.724 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.618 3.065 -5.631 11.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.062 4.062 3 C 0.092 3.908 4 N -0.161 5.161 5 C -0.464 4.464 6 H 0.125 0.875 7 C -0.167 4.167 8 N -0.510 5.510 9 Si 0.749 3.251 10 H -0.199 1.199 11 H -0.192 1.192 12 H -0.208 1.208 13 C 0.255 3.745 14 O -0.478 6.478 15 C -0.112 4.112 16 H 0.125 0.875 17 C -0.140 4.140 18 C -0.168 4.168 19 C -0.170 4.170 20 C -0.147 4.147 21 C -0.218 4.218 22 C 0.256 3.744 23 O -0.350 6.350 24 C -0.201 4.201 25 H 0.101 0.899 26 H 0.165 0.835 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.419 2.767 -6.055 9.968 hybrid contribution 0.663 0.997 0.657 1.366 sum 8.081 3.764 -5.398 10.422 Atomic orbital electron populations 1.80885 1.13838 1.11549 1.10530 1.29468 0.95463 0.90199 0.91029 1.18956 0.81138 0.94141 0.96537 1.43654 1.55833 1.11772 1.04800 1.19762 1.35797 0.89305 1.01553 0.87532 1.25250 0.95298 0.99553 0.96642 1.69882 1.28127 1.40452 1.12541 0.85964 0.79042 0.80772 0.79283 1.19907 1.19167 1.20842 1.20123 0.82577 0.88524 0.83240 1.90571 1.55659 1.19190 1.82420 1.21302 0.98864 0.96313 0.94700 0.87507 1.21586 1.00751 0.97705 0.93964 1.21871 0.97842 0.98681 0.98393 1.21974 0.98525 0.94256 1.02278 1.21604 0.97579 0.96788 0.98722 1.22228 0.95206 1.02597 1.01774 1.24383 0.85599 0.82436 0.82001 1.90357 1.59762 1.59852 1.25050 1.22123 0.99017 0.95735 1.03191 0.89936 0.83532 0.91310 0.90987 0.91548 0.91886 0.92055 0.90223 0.91795 0.91063 0.91360 0.88254 0.89151 0.89420 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.26 18.54 42.15 0.78 -11.48 16 2 C 0.26 6.04 14.14 -20.76 -0.29 5.74 16 3 C 0.22 4.62 5.09 -6.83 -0.03 4.58 16 4 N -0.44 -9.41 2.61 -117.93 -0.31 -9.72 16 5 C -0.34 -7.00 8.10 -14.93 -0.12 -7.12 16 6 H 0.11 1.99 4.62 -52.49 -0.24 1.75 16 7 C 0.04 0.79 5.12 -17.47 -0.09 0.70 16 8 N -0.87 -19.92 9.05 55.50 0.50 -19.41 16 9 Si 0.92 16.92 29.58 -169.99 -5.03 11.89 16 10 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 11 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 12 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 13 C 0.47 9.72 6.72 -10.99 -0.07 9.64 16 14 O -0.59 -13.90 15.63 5.55 0.09 -13.81 16 15 C -0.09 -1.53 1.23 -91.60 -0.11 -1.64 16 16 H 0.11 1.64 2.37 -51.93 -0.12 1.52 16 17 C -0.10 -1.57 4.44 -26.37 -0.12 -1.69 16 18 C -0.13 -1.67 5.37 -26.48 -0.14 -1.81 16 19 C -0.13 -1.50 5.51 -26.44 -0.15 -1.65 16 20 C -0.11 -1.23 5.63 -26.64 -0.15 -1.38 16 21 C -0.18 -2.34 5.45 -28.17 -0.15 -2.50 16 22 C 0.38 6.00 4.16 -29.41 -0.12 5.88 16 23 O -0.47 -8.68 17.42 5.99 0.10 -8.58 16 24 C -0.16 -2.79 4.98 -28.11 -0.14 -2.93 16 25 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 26 H 0.15 3.08 5.71 -51.93 -0.30 2.78 16 27 H 0.28 6.15 8.31 -40.82 -0.34 5.81 16 28 H 0.07 1.14 7.84 -51.93 -0.41 0.73 16 29 H 0.07 1.09 7.87 -51.93 -0.41 0.68 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.86 5.66 -51.93 -0.29 0.56 16 32 H 0.08 0.94 5.52 -51.93 -0.29 0.65 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.81 7.56 -51.93 -0.39 0.42 16 36 H 0.10 1.28 4.81 -51.93 -0.25 1.03 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.09 1.56 7.85 -51.93 -0.41 1.15 16 39 H 0.12 2.26 6.94 -51.93 -0.36 1.90 16 LS Contribution 305.25 15.07 4.60 4.60 Total: -1.00 -27.36 305.25 -5.64 -33.00 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.69 Total: 7.67 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -1.70 Total: 5.84 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.98 Total: -40.61 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: 0.19 Total: -22.39 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.36 -5.64 -33.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362726922.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.765 kcal (2) G-P(sol) polarization free energy of solvation -27.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds