Wall clock time and date at job start Tue Mar 31 2020 00:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46734 * 130.65525 * 3 2 1 5 5 C 1.37110 * 119.99954 * 96.68866 * 4 3 2 6 6 H 1.07997 * 119.99565 * 167.99073 * 5 4 3 7 7 C 1.38943 * 119.99791 * 347.98353 * 5 4 3 8 8 N 1.31415 * 120.00602 * 345.12796 * 7 5 4 9 9 Si 1.86803 * 119.99772 * 165.40457 * 7 5 4 10 10 H 1.48500 * 109.47226 * 269.72724 * 9 7 5 11 11 H 1.48496 * 109.47003 * 29.72557 * 9 7 5 12 12 H 1.48501 * 109.47226 * 149.72451 * 9 7 5 13 13 C 1.34770 * 119.99883 * 276.68275 * 4 3 2 14 14 O 1.21288 * 120.00111 * 356.32602 * 13 4 3 15 15 C 1.50699 * 119.99902 * 176.32883 * 13 4 3 16 16 H 1.08996 * 109.48258 * 46.20477 * 15 13 4 17 17 C 1.52669 * 109.48216 * 166.22820 * 15 13 4 18 18 C 1.54024 * 110.40277 * 193.53037 * 17 15 13 19 19 C 1.52455 * 111.05254 * 44.78821 * 18 17 15 20 20 C 1.54100 * 109.26936 * 245.78380 * 19 18 17 21 21 C 1.52048 * 109.16269 * 77.99971 * 20 19 18 22 22 C 1.51110 * 109.14895 * 287.37424 * 21 20 19 23 23 O 1.20765 * 120.42637 * 291.13211 * 22 21 20 24 24 C 1.49506 * 119.14527 * 111.14718 * 22 21 20 25 25 H 1.08999 * 109.47328 * 10.65152 * 3 2 1 26 26 H 1.09007 * 109.46926 * 250.65238 * 3 2 1 27 27 H 0.96993 * 120.00273 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.31157 * 313.81561 * 17 15 13 29 29 H 1.08998 * 109.31169 * 73.24045 * 17 15 13 30 30 H 1.09000 * 109.16360 * 165.19470 * 18 17 15 31 31 H 1.09003 * 109.16351 * 284.38288 * 18 17 15 32 32 H 1.09006 * 109.50302 * 5.72574 * 19 18 17 33 33 H 1.08994 * 109.50454 * 125.84589 * 19 18 17 34 34 H 1.08999 * 109.52183 * 197.90562 * 20 19 18 35 35 H 1.09002 * 109.52144 * 318.09760 * 20 19 18 36 36 H 1.09000 * 109.52740 * 47.28094 * 21 20 19 37 37 H 1.08999 * 109.52129 * 167.41077 * 21 20 19 38 38 H 1.08996 * 109.80163 * 197.42393 * 24 22 21 39 39 H 1.09004 * 109.79425 * 76.56271 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 0.9008 -1.0479 5 6 3.4541 2.1867 -0.7349 6 1 3.9912 2.7877 -1.4537 7 6 3.1260 2.7166 0.5069 8 7 2.2357 2.1152 1.2636 9 14 3.9449 4.2882 1.0976 10 1 5.1791 3.9503 1.8512 11 1 4.2950 5.1337 -0.0719 12 1 3.0117 5.0300 1.9831 13 6 3.1925 0.4648 -2.3194 14 8 2.9395 -0.6913 -2.5851 15 6 3.6152 1.4136 -3.4113 16 1 4.4829 1.9846 -3.0809 17 6 3.9752 0.6198 -4.6646 18 6 4.7224 1.5149 -5.6710 19 6 5.7898 2.3505 -4.9734 20 6 5.4081 3.8408 -5.0631 21 6 4.3311 4.1430 -4.0333 22 6 3.0255 3.5331 -4.4879 23 8 2.4463 3.9756 -5.4509 24 6 2.4597 2.3752 -3.7301 25 1 2.9718 -1.0091 -0.1899 26 1 2.9711 0.3413 0.9697 27 1 2.0070 2.4849 2.1306 28 1 4.6114 -0.2211 -4.3883 29 1 3.0630 0.2417 -5.1262 30 1 5.1962 0.8869 -6.4255 31 1 4.0086 2.1799 -6.1572 32 1 5.8572 2.0544 -3.9265 33 1 6.7521 2.1914 -5.4599 34 1 6.2864 4.4544 -4.8625 35 1 5.0294 4.0603 -6.0614 36 1 4.6168 3.7171 -3.0715 37 1 4.2150 5.2222 -3.9337 38 1 1.7123 1.8656 -4.3382 39 1 2.0057 2.7268 -2.8036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362726922.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:40 Heat of formation + Delta-G solvation = -61.185727 kcal Electronic energy + Delta-G solvation = -22997.691630 eV Core-core repulsion = 19711.994165 eV Total energy + Delta-G solvation = -3285.697465 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.71956 -40.30495 -37.91989 -37.23501 -36.38593 -34.29395 -33.43010 -32.48193 -29.59411 -27.44561 -27.12086 -25.95978 -23.23642 -21.67803 -20.82844 -20.04055 -19.38261 -18.42097 -17.98384 -16.89945 -16.72070 -16.25818 -16.13469 -15.83913 -15.34749 -15.14817 -14.88176 -14.75912 -14.56142 -14.42360 -13.81778 -13.50028 -13.37475 -13.20175 -13.05220 -12.93776 -12.87147 -12.58734 -12.34854 -12.24440 -12.01664 -11.96678 -11.88283 -11.57117 -11.19246 -11.12380 -11.10148 -10.70048 -10.15994 -9.94075 -8.26761 -5.90206 0.96179 1.49167 1.59559 1.68260 1.78968 2.03117 2.24074 2.39119 3.00165 3.10699 3.23710 3.63997 3.77460 3.86362 3.96412 4.05464 4.13614 4.22720 4.25945 4.44886 4.53540 4.65425 4.73094 4.75342 4.85745 4.94647 5.00962 5.05559 5.11803 5.18090 5.23302 5.27502 5.40832 5.43226 5.55052 5.59654 5.70822 6.40099 6.53179 6.94301 7.12362 7.49569 7.89359 8.73094 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015560 B = 0.008012 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.000456 B = 3493.981606 C = 4426.056846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C 0.265 3.735 3 C 0.218 3.782 4 N -0.448 5.448 5 C -0.341 4.341 6 H 0.129 0.871 7 C -0.001 4.001 8 N -0.902 5.902 9 Si 0.981 3.019 10 H -0.269 1.269 11 H -0.247 1.247 12 H -0.302 1.302 13 C 0.457 3.543 14 O -0.624 6.624 15 C -0.080 4.080 16 H 0.129 0.871 17 C -0.099 4.099 18 C -0.124 4.124 19 C -0.132 4.132 20 C -0.105 4.105 21 C -0.178 4.178 22 C 0.385 3.615 23 O -0.501 6.501 24 C -0.162 4.162 25 H 0.097 0.903 26 H 0.151 0.849 27 H 0.272 0.728 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.070 0.930 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.325 4.666 -6.325 14.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.204 5.204 2 C -0.052 4.052 3 C 0.091 3.909 4 N -0.167 5.167 5 C -0.467 4.467 6 H 0.147 0.853 7 C -0.202 4.202 8 N -0.542 5.542 9 Si 0.805 3.195 10 H -0.194 1.194 11 H -0.170 1.170 12 H -0.229 1.229 13 C 0.247 3.753 14 O -0.511 6.511 15 C -0.101 4.101 16 H 0.147 0.853 17 C -0.137 4.137 18 C -0.161 4.161 19 C -0.169 4.169 20 C -0.143 4.143 21 C -0.215 4.215 22 C 0.264 3.736 23 O -0.378 6.378 24 C -0.200 4.200 25 H 0.115 0.885 26 H 0.168 0.832 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.089 0.911 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.148 4.371 -6.763 12.955 hybrid contribution -0.238 0.435 0.871 1.002 sum 9.910 4.806 -5.892 12.491 Atomic orbital electron populations 1.80869 1.14928 1.12805 1.11759 1.30024 0.96026 0.89150 0.89972 1.19118 0.79664 0.95115 0.96972 1.43890 1.55559 1.12188 1.05043 1.20228 1.35393 0.89162 1.01928 0.85337 1.25983 0.95460 1.02060 0.96688 1.69992 1.29583 1.41927 1.12719 0.85064 0.77680 0.77691 0.79026 1.19382 1.16989 1.22889 1.20841 0.81923 0.88750 0.83762 1.90547 1.56885 1.20750 1.82910 1.21295 0.99198 0.95641 0.93945 0.85324 1.21551 1.00228 0.98051 0.93867 1.21839 0.97900 0.98445 0.97961 1.21998 0.98935 0.93913 1.02093 1.21634 0.97835 0.97115 0.97693 1.22291 0.93542 1.03279 1.02394 1.24573 0.86473 0.81464 0.81054 1.90355 1.60830 1.60460 1.26193 1.22069 0.98935 0.96648 1.02358 0.88497 0.83173 0.91813 0.91315 0.93518 0.90175 0.93337 0.90450 0.89292 0.88095 0.91943 0.87777 0.87571 0.91089 0.87946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -26.81 18.54 20.01 0.37 -26.44 16 2 C 0.27 12.70 14.14 89.44 1.26 13.97 16 3 C 0.22 9.22 5.09 84.57 0.43 9.65 16 4 N -0.45 -18.88 2.61 -645.42 -1.68 -20.57 16 5 C -0.34 -13.62 8.10 84.04 0.68 -12.94 16 6 H 0.13 4.44 4.62 -2.91 -0.01 4.43 16 7 C 0.00 -0.03 5.12 84.92 0.43 0.40 16 8 N -0.90 -41.20 9.05 21.66 0.20 -41.00 16 9 Si 0.98 33.06 29.58 68.60 2.03 35.09 16 10 H -0.27 -8.82 7.11 99.48 0.71 -8.11 16 11 H -0.25 -7.45 7.11 99.48 0.71 -6.74 16 12 H -0.30 -11.11 7.11 99.48 0.71 -10.41 16 13 C 0.46 18.91 6.72 87.66 0.59 19.50 16 14 O -0.62 -29.46 15.63 -3.05 -0.05 -29.51 16 15 C -0.08 -2.62 1.23 -11.43 -0.01 -2.63 16 16 H 0.13 3.61 2.37 -2.39 -0.01 3.61 16 17 C -0.10 -2.96 4.44 30.83 0.14 -2.83 16 18 C -0.12 -2.88 5.37 30.76 0.17 -2.71 16 19 C -0.13 -2.46 5.51 30.79 0.17 -2.29 16 20 C -0.11 -1.92 5.63 30.65 0.17 -1.75 16 21 C -0.18 -3.99 5.45 29.66 0.16 -3.83 16 22 C 0.39 11.65 4.16 28.86 0.12 11.77 16 23 O -0.50 -17.88 17.42 -1.46 -0.03 -17.91 16 24 C -0.16 -5.52 4.98 29.70 0.15 -5.38 16 25 H 0.10 3.79 7.58 -2.39 -0.02 3.77 16 26 H 0.15 6.31 5.71 -2.38 -0.01 6.30 16 27 H 0.27 12.20 8.31 -92.71 -0.77 11.43 16 28 H 0.07 2.10 7.84 -2.39 -0.02 2.08 16 29 H 0.05 1.56 7.87 -2.39 -0.02 1.54 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.27 5.66 -2.39 -0.01 1.26 16 32 H 0.08 1.51 5.52 -2.38 -0.01 1.49 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.26 7.56 -2.39 -0.02 1.24 16 36 H 0.10 2.24 4.81 -2.39 -0.01 2.23 16 37 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.07 2.61 7.85 -2.39 -0.02 2.59 16 39 H 0.10 3.88 6.94 -2.38 -0.02 3.86 16 Total: -1.00 -58.96 305.25 6.39 -52.57 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 1.09 Total: 26.83 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: 4.46 Total: 20.93 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -1.12 Total: -88.00 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -0.07 Total: -47.41 kcal Atomic # 14 Polarization: 33.06 SS G_CDS: 2.03 Total: 35.09 kcal Total: -58.96 6.39 -52.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362726922.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.616 kcal (2) G-P(sol) polarization free energy of solvation -58.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds