Wall clock time and date at job start Tue Mar 31 2020 00:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99820 * 2 1 4 4 H 1.48490 * 109.47192 * 240.00294 * 3 2 1 5 5 H 1.48497 * 109.46900 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46756 * 120.00508 * 3 2 1 7 7 C 1.37873 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00199 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46986 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46723 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00027 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99714 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00337 * 359.97438 * 13 11 10 15 15 C 1.53000 * 109.46840 * 270.00307 * 14 13 11 16 16 O 1.42899 * 109.47405 * 64.99638 * 15 14 13 17 17 C 1.46502 * 120.00005 * 179.97438 * 13 11 10 18 18 C 1.50701 * 109.47310 * 270.00108 * 17 13 11 19 19 C 1.38669 * 120.41602 * 269.72046 * 18 17 13 20 20 C 1.38632 * 118.41748 * 179.78318 * 19 18 17 21 21 C 1.38222 * 119.16356 * 0.51068 * 20 19 18 22 22 N 1.31860 * 120.76329 * 359.72944 * 21 20 19 23 23 C 1.31891 * 121.72290 * 359.97438 * 22 21 20 24 24 H 0.96996 * 120.00258 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.46827 * 60.00151 * 9 7 2 26 26 H 1.08999 * 109.46394 * 300.00172 * 9 7 2 27 27 H 1.08992 * 109.47282 * 59.99571 * 10 9 7 28 28 H 1.09002 * 109.47043 * 299.99300 * 10 9 7 29 29 H 1.09002 * 109.47391 * 149.99977 * 14 13 11 30 30 H 1.09001 * 109.46813 * 30.00033 * 14 13 11 31 31 H 1.09002 * 109.46642 * 184.99913 * 15 14 13 32 32 H 1.09002 * 109.47069 * 304.99442 * 15 14 13 33 33 H 0.96699 * 114.00112 * 180.02562 * 16 15 14 34 34 H 1.08998 * 109.46888 * 29.99915 * 17 13 11 35 35 H 1.08994 * 109.47490 * 149.99977 * 17 13 11 36 36 H 1.08002 * 120.79421 * 0.02562 * 19 18 17 37 37 H 1.08001 * 120.41868 * 180.22137 * 20 19 18 38 38 H 1.07997 * 119.62097 * 179.75041 * 21 20 19 39 39 H 1.08000 * 119.61220 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 8 0.2791 -4.9672 -0.0011 13 7 2.1659 -6.1343 -0.0008 14 6 3.6309 -6.1343 -0.0003 15 6 4.1413 -6.1345 -1.4426 16 8 3.7634 -4.9135 -2.0818 17 6 1.4335 -7.4031 -0.0008 18 6 1.1818 -7.8380 1.4200 19 6 2.0974 -8.6432 2.0804 20 6 1.8265 -9.0148 3.3882 21 6 0.6559 -8.5824 3.9826 22 7 -0.1946 -7.8214 3.3222 23 6 0.0332 -7.4437 2.0793 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8897 27 1 2.8721 -3.6042 0.8893 28 1 2.8720 -3.6043 -0.8906 29 1 3.9941 -7.0242 0.5138 30 1 3.9940 -5.2442 0.5136 31 1 5.2276 -6.2240 -1.4435 32 1 3.7069 -6.9764 -1.9817 33 1 4.0542 -4.8446 -3.0015 34 1 0.4812 -7.2729 -0.5150 35 1 2.0227 -8.1628 -0.5143 36 1 3.0021 -8.9697 1.5890 37 1 2.5191 -9.6383 3.9341 38 1 0.4355 -8.8709 4.9997 39 1 -0.6867 -6.8196 1.5707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362907718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:35 Heat of formation + Delta-G solvation = -53.897928 kcal Electronic energy + Delta-G solvation = -21664.315546 eV Core-core repulsion = 18378.934104 eV Total energy + Delta-G solvation = -3285.381442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39259 -39.23481 -36.95377 -35.26081 -33.38336 -32.75533 -31.85335 -30.67902 -29.13023 -26.94091 -25.03706 -23.67338 -22.84186 -22.42005 -20.95315 -18.40726 -17.61045 -17.13223 -16.93387 -16.23158 -15.91438 -15.82538 -15.56861 -14.79768 -14.35837 -14.25399 -13.76510 -13.51780 -13.33095 -13.16319 -12.85195 -12.55831 -12.22783 -12.10414 -11.92983 -11.59146 -11.41344 -10.96297 -10.81274 -10.52422 -10.05941 -9.92517 -9.71911 -9.52952 -9.43578 -9.23954 -9.02128 -8.76436 -8.45900 -8.21323 -5.86453 -3.89771 1.03022 1.21593 3.27230 3.33762 3.39868 3.44172 3.46285 3.87822 4.19510 4.42917 4.54400 4.63706 4.76624 4.84990 4.93143 5.02646 5.09195 5.14714 5.27877 5.36060 5.48159 5.51538 5.55964 5.74174 5.77872 5.88243 5.99736 6.20584 6.40492 6.67397 6.69068 6.76605 7.14704 7.68453 7.77623 7.85421 7.98274 8.01790 8.19362 8.51065 8.85041 9.18766 9.72704 11.24671 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018378 B = 0.004572 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.197028 B = 6123.121581 C = 7054.982937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.039 3.961 10 C -0.133 4.133 11 C 0.523 3.477 12 O -0.535 6.535 13 N -0.619 5.619 14 C 0.111 3.889 15 C 0.057 3.943 16 O -0.554 6.554 17 C 0.158 3.842 18 C -0.154 4.154 19 C -0.068 4.068 20 C -0.180 4.180 21 C 0.095 3.905 22 N -0.485 5.485 23 C 0.126 3.874 24 H 0.260 0.740 25 H 0.022 0.978 26 H 0.018 0.982 27 H 0.068 0.932 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.375 0.625 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.152 0.848 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.128 -20.923 0.525 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.559 4.559 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.173 4.173 11 C 0.315 3.685 12 O -0.410 6.410 13 N -0.354 5.354 14 C -0.013 4.013 15 C -0.022 4.022 16 O -0.360 6.360 17 C 0.034 3.966 18 C -0.157 4.157 19 C -0.094 4.094 20 C -0.200 4.200 21 C -0.062 4.062 22 N -0.194 5.194 23 C -0.032 4.032 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.086 0.914 28 H 0.127 0.873 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.222 0.778 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.170 0.830 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.260 -20.381 1.520 22.044 hybrid contribution 1.720 0.370 -0.848 1.953 sum 9.980 -20.012 0.672 22.372 Atomic orbital electron populations 1.69992 1.06013 1.26494 1.50534 1.25015 0.94789 0.99072 0.95522 0.86684 0.79552 0.83396 0.78462 1.20302 1.21356 1.20359 1.21193 0.92834 0.91058 1.50862 0.92784 1.18875 0.93198 0.89591 0.98181 1.22054 1.00809 0.91198 1.03201 1.21638 0.88248 0.85496 0.73127 1.90627 1.14494 1.87207 1.48663 1.48139 1.05856 1.05372 1.76026 1.21601 0.80670 1.03730 0.95255 1.22643 0.97757 0.87371 0.94416 1.86663 1.81313 1.37990 1.30013 1.20150 0.99057 0.86073 0.91298 1.21373 0.96256 0.99014 0.99052 1.21448 0.98178 0.95419 0.94403 1.22084 0.99234 1.02636 0.96077 1.22808 0.90329 0.93362 0.99734 1.67785 1.31948 1.10883 1.08742 1.22986 0.95545 0.94704 0.89918 0.93029 0.95996 0.96351 0.91352 0.87300 0.89810 0.88999 0.93056 0.93851 0.77758 0.88778 0.90242 0.85220 0.85025 0.83033 0.82005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.22 13.29 55.43 0.74 -27.49 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -15.31 9.11 -34.44 -0.31 -15.63 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.04 1.10 4.26 -27.88 -0.12 0.98 16 10 C -0.13 -2.92 4.12 -27.88 -0.11 -3.03 16 11 C 0.52 10.54 7.37 -10.99 -0.08 10.45 16 12 O -0.53 -12.68 15.12 5.56 0.08 -12.60 16 13 N -0.62 -8.97 2.44 -175.06 -0.43 -9.40 16 14 C 0.11 1.21 5.78 -4.04 -0.02 1.19 16 15 C 0.06 0.53 7.39 37.16 0.27 0.81 16 16 O -0.55 -6.89 10.38 -35.23 -0.37 -7.26 16 17 C 0.16 1.93 5.56 -5.19 -0.03 1.90 16 18 C -0.15 -1.94 5.48 -104.48 -0.57 -2.51 16 19 C -0.07 -0.68 9.86 -39.28 -0.39 -1.06 16 20 C -0.18 -1.74 10.11 -39.44 -0.40 -2.14 16 21 C 0.09 1.11 11.18 -17.55 -0.20 0.91 16 22 N -0.49 -7.37 10.36 -13.25 -0.14 -7.51 16 23 C 0.13 1.92 10.86 -17.55 -0.19 1.73 16 24 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 25 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 26 H 0.02 0.56 8.10 -51.93 -0.42 0.14 16 27 H 0.07 1.42 7.40 -51.93 -0.38 1.03 16 28 H 0.11 2.28 5.12 -51.93 -0.27 2.01 16 29 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 30 H 0.09 1.12 6.44 -51.93 -0.33 0.79 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.37 3.06 9.12 45.56 0.42 3.48 16 34 H 0.09 1.31 7.37 -51.93 -0.38 0.92 16 35 H 0.08 0.70 8.02 -51.93 -0.42 0.28 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.16 2.73 7.61 -52.49 -0.40 2.33 16 LS Contribution 330.86 15.07 4.99 4.99 Total: -1.00 -37.52 330.86 -7.08 -44.60 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -4.68 Total: 2.26 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -2.25 Total: -4.78 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.17 Total: -44.39 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.28 Total: -19.86 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -37.52 -7.08 -44.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362907718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.303 kcal (2) G-P(sol) polarization free energy of solvation -37.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds