Wall clock time and date at job start Tue Mar 31 2020 00:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99820 * 2 1 4 4 H 1.48490 * 109.47192 * 240.00294 * 3 2 1 5 5 H 1.48497 * 109.46900 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46756 * 120.00508 * 3 2 1 7 7 C 1.37873 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00199 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46986 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46723 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00027 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99714 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00337 * 359.97438 * 13 11 10 15 15 C 1.53000 * 109.46840 * 270.00307 * 14 13 11 16 16 O 1.42899 * 109.47405 * 64.99638 * 15 14 13 17 17 C 1.46502 * 120.00005 * 179.97438 * 13 11 10 18 18 C 1.50701 * 109.47310 * 270.00108 * 17 13 11 19 19 C 1.38669 * 120.41602 * 269.72046 * 18 17 13 20 20 C 1.38632 * 118.41748 * 179.78318 * 19 18 17 21 21 C 1.38222 * 119.16356 * 0.51068 * 20 19 18 22 22 N 1.31860 * 120.76329 * 359.72944 * 21 20 19 23 23 C 1.31891 * 121.72290 * 359.97438 * 22 21 20 24 24 H 0.96996 * 120.00258 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.46827 * 60.00151 * 9 7 2 26 26 H 1.08999 * 109.46394 * 300.00172 * 9 7 2 27 27 H 1.08992 * 109.47282 * 59.99571 * 10 9 7 28 28 H 1.09002 * 109.47043 * 299.99300 * 10 9 7 29 29 H 1.09002 * 109.47391 * 149.99977 * 14 13 11 30 30 H 1.09001 * 109.46813 * 30.00033 * 14 13 11 31 31 H 1.09002 * 109.46642 * 184.99913 * 15 14 13 32 32 H 1.09002 * 109.47069 * 304.99442 * 15 14 13 33 33 H 0.96699 * 114.00112 * 180.02562 * 16 15 14 34 34 H 1.08998 * 109.46888 * 29.99915 * 17 13 11 35 35 H 1.08994 * 109.47490 * 149.99977 * 17 13 11 36 36 H 1.08002 * 120.79421 * 0.02562 * 19 18 17 37 37 H 1.08001 * 120.41868 * 180.22137 * 20 19 18 38 38 H 1.07997 * 119.62097 * 179.75041 * 21 20 19 39 39 H 1.08000 * 119.61220 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 8 0.2791 -4.9672 -0.0011 13 7 2.1659 -6.1343 -0.0008 14 6 3.6309 -6.1343 -0.0003 15 6 4.1413 -6.1345 -1.4426 16 8 3.7634 -4.9135 -2.0818 17 6 1.4335 -7.4031 -0.0008 18 6 1.1818 -7.8380 1.4200 19 6 2.0974 -8.6432 2.0804 20 6 1.8265 -9.0148 3.3882 21 6 0.6559 -8.5824 3.9826 22 7 -0.1946 -7.8214 3.3222 23 6 0.0332 -7.4437 2.0793 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8897 27 1 2.8721 -3.6042 0.8893 28 1 2.8720 -3.6043 -0.8906 29 1 3.9941 -7.0242 0.5138 30 1 3.9940 -5.2442 0.5136 31 1 5.2276 -6.2240 -1.4435 32 1 3.7069 -6.9764 -1.9817 33 1 4.0542 -4.8446 -3.0015 34 1 0.4812 -7.2729 -0.5150 35 1 2.0227 -8.1628 -0.5143 36 1 3.0021 -8.9697 1.5890 37 1 2.5191 -9.6383 3.9341 38 1 0.4355 -8.8709 4.9997 39 1 -0.6867 -6.8196 1.5707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362907718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:35 Heat of formation + Delta-G solvation = -82.799440 kcal Electronic energy + Delta-G solvation = -21665.568809 eV Core-core repulsion = 18378.934104 eV Total energy + Delta-G solvation = -3286.634706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.45669 -40.51016 -37.98917 -36.43653 -35.52723 -33.85597 -32.98724 -32.44894 -30.05374 -28.48525 -26.72590 -24.59865 -23.98780 -23.61960 -22.54798 -19.79055 -18.84798 -18.38667 -18.02001 -17.64935 -17.10343 -17.04886 -16.86870 -16.42610 -15.89035 -15.34608 -14.83932 -14.64728 -14.53781 -14.29325 -14.11136 -13.91654 -13.87813 -13.30424 -13.22785 -12.94885 -12.76744 -12.67074 -12.44259 -12.27700 -11.75012 -11.48467 -11.31046 -10.91336 -10.76697 -10.60266 -10.55044 -10.42848 -9.97402 -9.62747 -8.16573 -6.31040 0.10321 0.35488 1.40463 1.46242 1.54004 1.77983 2.12907 2.43863 2.91914 3.15457 3.48444 3.52239 3.74512 3.84517 4.01279 4.08364 4.13826 4.26007 4.32391 4.47036 4.54223 4.59137 4.61790 4.74146 4.76098 4.83710 4.85821 5.03697 5.18263 5.24158 5.30926 5.50239 5.65309 5.69754 5.80458 5.87578 6.20548 6.41206 6.86631 7.03813 7.07039 7.34373 7.39210 8.96237 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018378 B = 0.004572 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.197028 B = 6123.121581 C = 7054.982937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.976 3.024 4 H -0.260 1.260 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.540 4.540 8 H 0.072 0.928 9 C 0.048 3.952 10 C -0.119 4.119 11 C 0.518 3.482 12 O -0.588 6.588 13 N -0.603 5.603 14 C 0.098 3.902 15 C 0.057 3.943 16 O -0.594 6.594 17 C 0.159 3.841 18 C -0.159 4.159 19 C -0.056 4.056 20 C -0.165 4.165 21 C 0.079 3.921 22 N -0.527 5.527 23 C 0.088 3.912 24 H 0.263 0.737 25 H -0.022 1.022 26 H -0.029 1.029 27 H 0.081 0.919 28 H 0.124 0.876 29 H 0.131 0.869 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.391 0.609 34 H 0.064 0.936 35 H 0.132 0.868 36 H 0.178 0.822 37 H 0.176 0.824 38 H 0.176 0.824 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.815 -22.922 0.749 27.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.578 4.578 8 H 0.090 0.910 9 C 0.010 3.990 10 C -0.159 4.159 11 C 0.309 3.691 12 O -0.468 6.468 13 N -0.335 5.335 14 C -0.024 4.024 15 C -0.021 4.021 16 O -0.403 6.403 17 C 0.036 3.964 18 C -0.162 4.162 19 C -0.083 4.083 20 C -0.184 4.184 21 C -0.078 4.078 22 N -0.236 5.236 23 C -0.068 4.068 24 H 0.071 0.929 25 H -0.003 1.003 26 H -0.010 1.010 27 H 0.099 0.901 28 H 0.142 0.858 29 H 0.149 0.851 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.241 0.759 34 H 0.083 0.917 35 H 0.150 0.850 36 H 0.195 0.805 37 H 0.194 0.806 38 H 0.193 0.807 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.015 -22.434 1.724 25.993 hybrid contribution 0.276 0.859 -0.859 1.246 sum 13.291 -21.575 0.865 25.355 Atomic orbital electron populations 1.70190 1.08400 1.27826 1.51538 1.26172 0.95730 1.04002 0.94568 0.85349 0.78059 0.77149 0.79532 1.18433 1.21165 1.18751 1.21640 0.93773 0.91622 1.50772 0.90966 1.18642 0.93575 0.92895 0.93865 1.21765 0.99274 0.90274 1.04548 1.21276 0.87452 0.86902 0.73456 1.90615 1.16639 1.88133 1.51450 1.47992 1.07687 1.04309 1.73543 1.22087 0.77683 1.05403 0.97224 1.22784 0.99785 0.86646 0.92885 1.86552 1.82161 1.39927 1.31614 1.20339 0.98606 0.85770 0.91670 1.21341 0.95992 0.99859 0.99004 1.21942 0.98549 0.93383 0.94381 1.22565 0.98468 1.01357 0.96032 1.23375 0.90911 0.92756 1.00747 1.67655 1.34167 1.12716 1.09053 1.22644 0.96876 0.96442 0.90831 0.92888 1.00334 1.01021 0.90052 0.85788 0.85093 0.90449 0.89638 0.92227 0.75856 0.91703 0.85016 0.80452 0.80648 0.80669 0.86058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.20 13.29 21.45 0.28 -61.91 16 2 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 3 Si 0.98 45.95 29.54 68.60 2.03 47.98 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.54 -32.65 9.11 25.60 0.23 -32.41 16 8 H 0.07 4.00 7.74 -2.91 -0.02 3.98 16 9 C 0.05 2.89 4.26 29.85 0.13 3.01 16 10 C -0.12 -5.42 4.12 29.85 0.12 -5.29 16 11 C 0.52 21.89 7.37 87.66 0.65 22.54 16 12 O -0.59 -30.65 15.12 -3.04 -0.05 -30.70 16 13 N -0.60 -16.85 2.44 -826.16 -2.02 -18.87 16 14 C 0.10 1.76 5.78 86.38 0.50 2.26 16 15 C 0.06 0.83 7.39 71.98 0.53 1.36 16 16 O -0.59 -13.62 10.38 -148.98 -1.55 -15.17 16 17 C 0.16 3.68 5.56 85.63 0.48 4.16 16 18 C -0.16 -3.84 5.48 -19.77 -0.11 -3.95 16 19 C -0.06 -0.87 9.86 22.47 0.22 -0.64 16 20 C -0.16 -2.47 10.11 22.36 0.23 -2.25 16 21 C 0.08 1.73 11.18 84.68 0.95 2.68 16 22 N -0.53 -16.75 10.36 -195.84 -2.03 -18.78 16 23 C 0.09 2.92 10.86 84.67 0.92 3.84 16 24 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 25 H -0.02 -1.48 8.10 -2.39 -0.02 -1.50 16 26 H -0.03 -1.96 8.10 -2.39 -0.02 -1.98 16 27 H 0.08 3.42 7.40 -2.39 -0.02 3.40 16 28 H 0.12 5.25 5.12 -2.39 -0.01 5.23 16 29 H 0.13 1.15 8.07 -2.39 -0.02 1.13 16 30 H 0.08 1.67 6.44 -2.39 -0.02 1.65 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.39 5.68 9.12 -74.06 -0.68 5.00 16 34 H 0.06 1.91 7.37 -2.39 -0.02 1.89 16 35 H 0.13 1.69 8.02 -2.39 -0.02 1.67 16 36 H 0.18 1.05 8.06 -2.91 -0.02 1.02 16 37 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 38 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 39 H 0.12 4.81 7.61 -2.91 -0.02 4.79 16 Total: -1.00 -91.83 330.86 2.36 -89.47 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.38 Total: 12.67 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 5.30 Total: -4.70 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -3.76 Total: -99.56 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -1.59 Total: -45.87 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -91.83 2.36 -89.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362907718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.668 kcal (2) G-P(sol) polarization free energy of solvation -91.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds