Wall clock time and date at job start Tue Mar 31 2020 00:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47214 * 147.32327 * 3 2 1 5 5 N 1.46493 * 109.47552 * 179.97438 * 4 3 2 6 6 C 1.46495 * 120.00081 * 89.99613 * 5 4 3 7 7 C 1.50703 * 109.47395 * 270.00399 * 6 5 4 8 8 H 1.07994 * 119.99603 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99838 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00380 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99848 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47261 * 239.99776 * 11 9 7 14 14 H 1.48500 * 109.47454 * 119.99769 * 11 9 7 15 15 C 1.34781 * 120.00244 * 270.00351 * 5 4 3 16 16 O 1.21280 * 120.00225 * 179.97438 * 15 5 4 17 17 C 1.50708 * 119.99450 * 359.97438 * 15 5 4 18 18 H 1.08996 * 115.56366 * 34.23069 * 17 15 5 19 19 C 1.53184 * 117.51930 * 248.36816 * 17 15 5 20 20 C 1.52106 * 117.51890 * 180.02562 * 17 15 5 21 21 C 1.53711 * 121.75165 * 218.50745 * 20 17 15 22 22 C 1.54697 * 103.69169 * 143.51625 * 21 20 17 23 23 O 1.44494 * 104.87516 * 23.83538 * 22 21 20 24 24 C 1.44636 * 105.46147 * 320.02382 * 23 22 21 25 25 H 1.09000 * 109.47456 * 27.32180 * 3 2 1 26 26 H 1.08997 * 109.46815 * 267.32090 * 3 2 1 27 27 H 1.09000 * 109.47030 * 59.99591 * 4 3 2 28 28 H 1.09004 * 109.46956 * 300.00052 * 4 3 2 29 29 H 1.09005 * 109.47411 * 150.00333 * 6 5 4 30 30 H 1.08998 * 109.46900 * 30.00412 * 6 5 4 31 31 H 0.97001 * 119.99667 * 0.02562 * 10 9 7 32 32 H 1.09001 * 117.52318 * 0.02562 * 19 17 15 33 33 H 1.09000 * 117.52042 * 145.15586 * 19 17 15 34 34 H 1.08992 * 110.57803 * 262.06965 * 21 20 17 35 35 H 1.09005 * 110.57602 * 24.81739 * 21 20 17 36 36 H 1.09005 * 110.35792 * 142.68551 * 22 21 20 37 37 H 1.09000 * 110.35989 * 264.87219 * 22 21 20 38 38 H 1.08995 * 110.41952 * 280.88715 * 24 23 22 39 39 H 1.09002 * 110.42125 * 158.42574 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.2151 -0.7788 5 7 4.5824 1.2161 -0.7783 6 6 5.3157 0.5315 -1.8458 7 6 5.5678 -0.8991 -1.4446 8 1 5.2171 -1.2619 -0.4898 9 6 6.2469 -1.7445 -2.2962 10 7 6.6743 -1.3026 -3.4587 11 14 6.5587 -3.5179 -1.7992 12 1 5.9804 -3.7639 -0.4536 13 1 8.0213 -3.7720 -1.7628 14 1 5.9226 -4.4277 -2.7856 15 6 5.2556 1.8469 0.2043 16 8 6.4684 1.8474 0.2050 17 6 4.5011 2.5516 1.3023 18 1 3.5619 2.0861 1.6012 19 6 4.5802 4.0807 1.3467 20 6 5.3170 3.2455 2.3822 21 6 4.8881 3.2259 3.8581 22 6 6.2268 3.1296 4.6273 23 8 7.2151 3.6671 3.7205 24 6 6.8515 3.1666 2.4131 25 1 2.9718 -0.9122 -0.4717 26 1 2.9712 0.0489 1.0265 27 1 2.7537 2.1279 -0.3071 28 1 2.7541 1.1669 -1.8054 29 1 6.2679 1.0350 -2.0133 30 1 4.7269 0.5533 -2.7628 31 1 6.5121 -0.3817 -3.7170 32 1 5.1776 4.5766 0.5817 33 1 3.6926 4.6216 1.6748 34 1 4.3629 4.1453 4.1167 35 1 4.2621 2.3575 4.0637 36 1 6.1843 3.7260 5.5388 37 1 6.4535 2.0903 4.8653 38 1 7.1816 2.1344 2.2958 39 1 7.2804 3.7949 1.6325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363798735.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:51 Heat of formation + Delta-G solvation = -31.352139 kcal Electronic energy + Delta-G solvation = -21922.856120 eV Core-core repulsion = 18638.452337 eV Total energy + Delta-G solvation = -3284.403783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.43569 -38.73910 -36.88724 -35.85940 -35.23251 -33.11912 -30.82487 -30.40910 -27.77855 -26.78913 -24.56012 -23.69708 -22.74725 -22.23390 -19.84400 -18.53636 -17.68235 -17.05352 -16.59809 -16.09010 -15.98037 -15.18648 -15.04186 -14.63600 -14.21453 -14.13884 -13.77969 -13.54061 -13.21374 -12.93408 -12.73927 -12.45959 -12.35714 -12.29067 -11.94158 -11.78012 -11.47503 -11.40785 -11.10742 -11.02452 -10.79607 -10.63667 -10.44945 -10.19981 -9.95424 -9.69729 -9.25746 -9.04176 -8.46435 -7.87248 -6.46663 -4.20641 2.69626 2.85029 2.93236 3.38478 3.42797 3.45322 3.54730 3.74853 4.05325 4.15320 4.37439 4.46373 4.65798 4.71570 4.85040 4.96973 5.08328 5.14625 5.19519 5.28984 5.34176 5.43416 5.46653 5.56519 5.64910 5.75235 5.82670 5.84207 5.89756 5.99630 6.10740 6.20809 6.65889 6.85988 7.00417 7.20573 7.60505 7.91301 8.06261 8.31749 8.67254 8.81428 9.49498 10.90644 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.005955 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.296606 B = 4700.829636 C = 5913.684738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.218 3.782 3 C -0.053 4.053 4 C 0.125 3.875 5 N -0.589 5.589 6 C 0.234 3.766 7 C -0.609 4.609 8 H 0.056 0.944 9 C 0.022 3.978 10 N -0.908 5.908 11 Si 1.073 2.927 12 H -0.289 1.289 13 H -0.286 1.286 14 H -0.287 1.287 15 C 0.537 3.463 16 O -0.529 6.529 17 C -0.172 4.172 18 H 0.122 0.878 19 C -0.135 4.135 20 C -0.132 4.132 21 C -0.119 4.119 22 C 0.047 3.953 23 O -0.382 6.382 24 C 0.092 3.908 25 H 0.131 0.869 26 H 0.105 0.895 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.024 0.976 31 H 0.269 0.731 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.022 8.645 11.684 15.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.100 4.100 3 C -0.095 4.095 4 C -0.002 4.002 5 N -0.320 5.320 6 C 0.115 3.885 7 C -0.647 4.647 8 H 0.074 0.926 9 C -0.183 4.183 10 N -0.544 5.544 11 Si 0.901 3.099 12 H -0.215 1.215 13 H -0.212 1.212 14 H -0.213 1.213 15 C 0.324 3.676 16 O -0.406 6.406 17 C -0.194 4.194 18 H 0.140 0.860 19 C -0.173 4.173 20 C -0.133 4.133 21 C -0.157 4.157 22 C -0.030 4.030 23 O -0.301 6.301 24 C 0.016 3.984 25 H 0.149 0.851 26 H 0.123 0.877 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.175 7.352 11.194 14.748 hybrid contribution -0.695 1.052 0.415 1.328 sum -6.870 8.404 11.609 15.893 Atomic orbital electron populations 1.81189 1.13066 1.09207 1.09363 1.29258 0.95204 0.92784 0.92704 1.19993 0.80829 1.04367 1.04279 1.21260 0.81773 0.95780 1.01344 1.47940 1.04984 1.52495 1.26537 1.19443 0.92079 0.92770 0.84233 1.22271 1.41071 0.95446 1.05946 0.92613 1.25758 0.93256 1.05522 0.93739 1.70747 1.43781 1.18799 1.21025 0.83483 0.76871 0.74452 0.75079 1.21486 1.21227 1.21321 1.19397 0.87393 0.79019 0.81796 1.90671 1.13608 1.60925 1.75372 1.22405 1.01638 0.96318 0.99010 0.86006 1.22932 1.02417 0.90843 1.01062 1.22100 0.96102 1.03723 0.91353 1.22418 0.98432 1.02878 0.91972 1.23357 0.86885 0.99090 0.93640 1.89148 1.50268 1.72460 1.18215 1.22884 0.90023 1.01106 0.84395 0.85120 0.87746 0.90555 0.89632 0.94603 0.95812 0.92069 0.87906 0.87785 0.90299 0.90165 0.89376 0.92223 0.89940 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.89 18.54 42.15 0.78 -6.11 16 2 C 0.22 2.84 15.43 -20.76 -0.32 2.52 16 3 C -0.05 -0.66 5.91 -29.52 -0.17 -0.83 16 4 C 0.12 1.64 5.04 -4.05 -0.02 1.62 16 5 N -0.59 -10.51 2.46 -175.06 -0.43 -10.94 16 6 C 0.23 5.36 4.51 -5.19 -0.02 5.34 16 7 C -0.61 -15.47 8.92 -34.44 -0.31 -15.78 16 8 H 0.06 1.39 7.42 -52.49 -0.39 1.00 16 9 C 0.02 0.60 5.46 -17.82 -0.10 0.50 16 10 N -0.91 -26.13 13.65 55.43 0.76 -25.37 16 11 Si 1.07 24.15 29.90 -169.99 -5.08 19.06 16 12 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 14 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 15 C 0.54 9.56 7.45 -10.98 -0.08 9.48 16 16 O -0.53 -11.57 13.41 5.56 0.07 -11.49 16 17 C -0.17 -2.21 4.69 -92.13 -0.43 -2.65 16 18 H 0.12 1.28 6.48 -51.93 -0.34 0.94 16 19 C -0.14 -1.50 10.00 -27.11 -0.27 -1.77 16 20 C -0.13 -1.65 2.50 -154.71 -0.39 -2.04 16 21 C -0.12 -1.19 6.88 -25.47 -0.18 -1.36 16 22 C 0.05 0.51 7.65 38.05 0.29 0.80 16 23 O -0.38 -5.58 11.65 -35.23 -0.41 -5.99 16 24 C 0.09 1.39 5.65 37.51 0.21 1.60 16 25 H 0.13 1.86 7.27 -51.93 -0.38 1.48 16 26 H 0.10 1.13 7.46 -51.93 -0.39 0.74 16 27 H 0.08 0.80 6.64 -51.93 -0.34 0.46 16 28 H 0.09 1.11 7.89 -51.93 -0.41 0.70 16 29 H 0.04 0.94 7.29 -51.93 -0.38 0.56 16 30 H 0.02 0.55 7.76 -51.93 -0.40 0.15 16 31 H 0.27 7.66 7.22 -40.82 -0.29 7.37 16 32 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 1.43 7.05 -51.93 -0.37 1.07 16 39 H 0.09 1.49 8.04 -51.93 -0.42 1.07 16 LS Contribution 330.40 15.07 4.98 4.98 Total: -1.00 -31.73 330.40 -6.56 -38.29 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.44 Total: 0.13 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -1.79 Total: -2.56 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 1.11 Total: -42.41 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.34 Total: -17.49 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.08 Total: 19.06 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.73 -6.56 -38.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363798735.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.934 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds