Wall clock time and date at job start Tue Mar 31 2020 00:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47214 * 147.32327 * 3 2 1 5 5 N 1.46493 * 109.47552 * 179.97438 * 4 3 2 6 6 C 1.46495 * 120.00081 * 89.99613 * 5 4 3 7 7 C 1.50703 * 109.47395 * 270.00399 * 6 5 4 8 8 H 1.07994 * 119.99603 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99838 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00380 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99848 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47261 * 239.99776 * 11 9 7 14 14 H 1.48500 * 109.47454 * 119.99769 * 11 9 7 15 15 C 1.34781 * 120.00244 * 270.00351 * 5 4 3 16 16 O 1.21280 * 120.00225 * 179.97438 * 15 5 4 17 17 C 1.50708 * 119.99450 * 359.97438 * 15 5 4 18 18 H 1.08996 * 115.56366 * 34.23069 * 17 15 5 19 19 C 1.53184 * 117.51930 * 248.36816 * 17 15 5 20 20 C 1.52106 * 117.51890 * 180.02562 * 17 15 5 21 21 C 1.53711 * 121.75165 * 218.50745 * 20 17 15 22 22 C 1.54697 * 103.69169 * 143.51625 * 21 20 17 23 23 O 1.44494 * 104.87516 * 23.83538 * 22 21 20 24 24 C 1.44636 * 105.46147 * 320.02382 * 23 22 21 25 25 H 1.09000 * 109.47456 * 27.32180 * 3 2 1 26 26 H 1.08997 * 109.46815 * 267.32090 * 3 2 1 27 27 H 1.09000 * 109.47030 * 59.99591 * 4 3 2 28 28 H 1.09004 * 109.46956 * 300.00052 * 4 3 2 29 29 H 1.09005 * 109.47411 * 150.00333 * 6 5 4 30 30 H 1.08998 * 109.46900 * 30.00412 * 6 5 4 31 31 H 0.97001 * 119.99667 * 0.02562 * 10 9 7 32 32 H 1.09001 * 117.52318 * 0.02562 * 19 17 15 33 33 H 1.09000 * 117.52042 * 145.15586 * 19 17 15 34 34 H 1.08992 * 110.57803 * 262.06965 * 21 20 17 35 35 H 1.09005 * 110.57602 * 24.81739 * 21 20 17 36 36 H 1.09005 * 110.35792 * 142.68551 * 22 21 20 37 37 H 1.09000 * 110.35989 * 264.87219 * 22 21 20 38 38 H 1.08995 * 110.41952 * 280.88715 * 24 23 22 39 39 H 1.09002 * 110.42125 * 158.42574 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.2151 -0.7788 5 7 4.5824 1.2161 -0.7783 6 6 5.3157 0.5315 -1.8458 7 6 5.5678 -0.8991 -1.4446 8 1 5.2171 -1.2619 -0.4898 9 6 6.2469 -1.7445 -2.2962 10 7 6.6743 -1.3026 -3.4587 11 14 6.5587 -3.5179 -1.7992 12 1 5.9804 -3.7639 -0.4536 13 1 8.0213 -3.7720 -1.7628 14 1 5.9226 -4.4277 -2.7856 15 6 5.2556 1.8469 0.2043 16 8 6.4684 1.8474 0.2050 17 6 4.5011 2.5516 1.3023 18 1 3.5619 2.0861 1.6012 19 6 4.5802 4.0807 1.3467 20 6 5.3170 3.2455 2.3822 21 6 4.8881 3.2259 3.8581 22 6 6.2268 3.1296 4.6273 23 8 7.2151 3.6671 3.7205 24 6 6.8515 3.1666 2.4131 25 1 2.9718 -0.9122 -0.4717 26 1 2.9712 0.0489 1.0265 27 1 2.7537 2.1279 -0.3071 28 1 2.7541 1.1669 -1.8054 29 1 6.2679 1.0350 -2.0133 30 1 4.7269 0.5533 -2.7628 31 1 6.5121 -0.3817 -3.7170 32 1 5.1776 4.5766 0.5817 33 1 3.6926 4.6216 1.6748 34 1 4.3629 4.1453 4.1167 35 1 4.2621 2.3575 4.0637 36 1 6.1843 3.7260 5.5388 37 1 6.4535 2.0903 4.8653 38 1 7.1816 2.1344 2.2958 39 1 7.2804 3.7949 1.6325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363798735.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:50 Heat of formation + Delta-G solvation = -51.457654 kcal Electronic energy + Delta-G solvation = -21923.727961 eV Core-core repulsion = 18638.452337 eV Total energy + Delta-G solvation = -3285.275624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.59659 -39.95876 -38.05653 -37.04792 -36.55384 -35.02464 -32.12728 -31.28172 -29.32071 -28.10067 -25.90951 -25.17890 -23.79814 -23.49643 -20.90944 -19.75615 -19.23999 -18.38553 -17.95825 -17.29824 -17.01134 -16.33675 -16.24162 -15.82084 -15.68503 -15.42989 -15.28311 -14.64932 -14.47239 -14.20796 -14.06310 -13.68858 -13.57570 -13.38870 -13.26911 -13.04982 -12.95656 -12.69053 -12.48300 -12.32399 -11.95583 -11.92280 -11.88526 -11.44719 -11.10987 -10.87598 -10.80877 -10.53763 -10.39365 -9.51098 -8.58603 -6.34186 1.50702 1.56225 1.63786 1.77744 1.78617 1.80937 2.15027 2.58286 2.71786 3.02214 3.12405 3.20232 3.38338 3.70255 3.75727 3.90830 3.95535 4.09210 4.12572 4.28754 4.46635 4.50460 4.54932 4.73599 4.77323 4.79840 4.82835 4.87918 4.93105 4.96728 5.06258 5.09478 5.12135 5.14849 5.59267 5.85719 5.91008 6.25965 6.54816 6.57596 6.66583 7.34505 7.47906 8.76974 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.005955 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.296606 B = 4700.829636 C = 5913.684738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.247 3.753 3 C -0.042 4.042 4 C 0.120 3.880 5 N -0.591 5.591 6 C 0.245 3.755 7 C -0.603 4.603 8 H 0.061 0.939 9 C -0.032 4.032 10 N -0.940 5.940 11 Si 1.114 2.886 12 H -0.266 1.266 13 H -0.291 1.291 14 H -0.278 1.278 15 C 0.528 3.472 16 O -0.582 6.582 17 C -0.171 4.171 18 H 0.160 0.840 19 C -0.115 4.115 20 C -0.140 4.140 21 C -0.108 4.108 22 C 0.035 3.965 23 O -0.403 6.403 24 C 0.093 3.907 25 H 0.112 0.888 26 H 0.129 0.871 27 H 0.116 0.884 28 H 0.085 0.915 29 H -0.007 1.007 30 H 0.021 0.979 31 H 0.256 0.744 32 H 0.088 0.912 33 H 0.146 0.854 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.668 9.107 14.128 18.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C -0.070 4.070 3 C -0.083 4.083 4 C -0.005 4.005 5 N -0.321 5.321 6 C 0.124 3.876 7 C -0.641 4.641 8 H 0.079 0.921 9 C -0.230 4.230 10 N -0.578 5.578 11 Si 0.937 3.063 12 H -0.190 1.190 13 H -0.218 1.218 14 H -0.203 1.203 15 C 0.317 3.683 16 O -0.462 6.462 17 C -0.192 4.192 18 H 0.177 0.823 19 C -0.152 4.152 20 C -0.141 4.141 21 C -0.145 4.145 22 C -0.041 4.041 23 O -0.323 6.323 24 C 0.017 3.983 25 H 0.130 0.870 26 H 0.147 0.853 27 H 0.134 0.866 28 H 0.103 0.897 29 H 0.011 0.989 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.164 0.836 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.132 0.868 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.879 7.832 13.662 18.078 hybrid contribution 0.200 0.971 -0.329 1.045 sum -8.679 8.803 13.333 18.182 Atomic orbital electron populations 1.81238 1.14069 1.10299 1.10687 1.29095 0.94787 0.91677 0.91487 1.19859 0.80192 1.02939 1.05306 1.21542 0.78639 0.98008 1.02272 1.47865 1.06877 1.51929 1.25396 1.18949 0.90951 0.91796 0.85944 1.22595 1.39552 0.96393 1.05594 0.92101 1.27108 0.93161 1.09265 0.93488 1.70865 1.46043 1.18262 1.22591 0.82962 0.76573 0.70630 0.76137 1.18991 1.21779 1.20337 1.20350 0.87139 0.78391 0.82384 1.90661 1.16292 1.62646 1.76640 1.22367 1.02242 0.97385 0.97189 0.82302 1.23100 1.03114 0.89458 0.99514 1.22165 0.94032 1.04512 0.93399 1.22448 0.97887 1.05073 0.89109 1.23677 0.86848 0.99495 0.94068 1.89120 1.52053 1.72685 1.18411 1.22611 0.92602 0.98601 0.84521 0.86990 0.85322 0.86616 0.89671 0.98884 0.96076 0.93417 0.89376 0.83602 0.87760 0.88228 0.86810 0.92396 0.93311 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -13.55 18.54 20.01 0.37 -13.18 16 2 C 0.25 5.66 15.43 89.44 1.38 7.04 16 3 C -0.04 -0.90 5.91 28.79 0.17 -0.73 16 4 C 0.12 2.83 5.04 86.38 0.44 3.27 16 5 N -0.59 -20.73 2.46 -826.16 -2.03 -22.76 16 6 C 0.25 11.61 4.51 85.63 0.39 11.99 16 7 C -0.60 -31.04 8.92 25.60 0.23 -30.82 16 8 H 0.06 3.01 7.42 -2.91 -0.02 2.99 16 9 C -0.03 -1.74 5.46 84.65 0.46 -1.28 16 10 N -0.94 -55.89 13.65 21.45 0.29 -55.59 16 11 Si 1.11 48.58 29.90 68.60 2.05 50.63 16 12 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 13 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 14 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 15 C 0.53 18.56 7.45 87.66 0.65 19.21 16 16 O -0.58 -26.63 13.41 -3.03 -0.04 -26.67 16 17 C -0.17 -3.84 4.69 -11.77 -0.06 -3.90 16 18 H 0.16 2.40 6.48 -2.39 -0.02 2.38 16 19 C -0.11 -2.13 10.00 30.35 0.30 -1.82 16 20 C -0.14 -3.16 2.50 -52.31 -0.13 -3.29 16 21 C -0.11 -1.68 6.88 31.41 0.22 -1.46 16 22 C 0.04 0.68 7.65 72.56 0.56 1.24 16 23 O -0.40 -11.66 11.65 -148.98 -1.74 -13.39 16 24 C 0.09 2.88 5.65 72.21 0.41 3.29 16 25 H 0.11 2.96 7.27 -2.39 -0.02 2.94 16 26 H 0.13 2.20 7.46 -2.39 -0.02 2.18 16 27 H 0.12 1.89 6.64 -2.39 -0.02 1.87 16 28 H 0.08 2.05 7.89 -2.39 -0.02 2.03 16 29 H -0.01 -0.38 7.29 -2.38 -0.02 -0.40 16 30 H 0.02 1.01 7.76 -2.39 -0.02 0.99 16 31 H 0.26 15.37 7.22 -92.71 -0.67 14.70 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.15 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 1.20 8.14 -2.38 -0.02 1.19 16 36 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 1.81 7.05 -2.39 -0.02 1.79 16 39 H 0.07 2.49 8.04 -2.39 -0.02 2.47 16 Total: -1.00 -73.74 330.40 5.08 -68.66 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 1.16 Total: 9.57 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 5.01 Total: 2.74 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -1.37 Total: -91.53 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -1.78 Total: -40.06 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.05 Total: 50.63 kcal Total: -73.74 5.08 -68.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363798735.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.201 kcal (2) G-P(sol) polarization free energy of solvation -73.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds