Wall clock time and date at job start Tue Mar 31 2020 00:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48499 * 109.47458 * 269.99771 * 3 2 1 5 5 H 1.48503 * 109.47205 * 29.99995 * 3 2 1 6 6 H 1.48501 * 109.47194 * 149.99544 * 3 2 1 7 7 C 1.37880 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99632 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00383 * 180.02562 * 7 2 1 10 10 N 1.46492 * 109.47032 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99697 * 180.02562 * 10 9 7 12 12 O 1.21585 * 119.99958 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99698 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99833 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47476 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47501 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47322 * 179.97438 * 16 15 14 18 18 C 1.38269 * 119.94432 * 89.99694 * 17 16 15 19 19 C 1.38137 * 120.06013 * 180.02562 * 18 17 16 20 20 C 1.38737 * 119.94162 * 359.97438 * 19 18 17 21 21 O 1.35896 * 120.05545 * 180.02562 * 20 19 18 22 22 C 1.38734 * 119.88732 * 0.27760 * 20 19 18 23 23 C 1.38143 * 119.94306 * 359.42517 * 22 20 19 24 24 H 0.96998 * 119.99986 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46815 * 59.99990 * 9 7 2 26 26 H 1.08995 * 109.47107 * 300.00410 * 9 7 2 27 27 H 0.97005 * 120.00483 * 0.02562 * 10 9 7 28 28 H 0.96996 * 120.00235 * 359.97438 * 13 11 10 29 29 H 1.09000 * 109.47259 * 59.99989 * 14 13 11 30 30 H 1.08999 * 109.47530 * 300.00211 * 14 13 11 31 31 H 1.09000 * 109.46925 * 59.99736 * 15 14 13 32 32 H 1.09008 * 109.46725 * 300.00290 * 15 14 13 33 33 H 1.08997 * 109.47096 * 59.99673 * 16 15 14 34 34 H 1.09005 * 109.46515 * 299.99725 * 16 15 14 35 35 H 1.08008 * 119.96973 * 0.02562 * 18 17 16 36 36 H 1.07997 * 120.03660 * 179.97438 * 19 18 17 37 37 H 0.96700 * 114.00170 * 90.00174 * 21 20 19 38 38 H 1.07999 * 120.02623 * 179.72382 * 22 20 19 39 39 H 1.08005 * 119.97511 * 180.27480 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 5.3249 -2.8215 0.0020 12 8 6.1150 -1.8974 0.0034 13 7 5.7741 -4.0923 0.0013 14 6 7.2145 -4.3600 0.0018 15 6 7.4523 -5.8714 0.0003 16 6 8.9566 -6.1510 0.0015 17 6 9.1908 -7.6397 0.0006 18 6 9.2991 -8.3206 -1.1979 19 6 9.5134 -9.6852 -1.2015 20 6 9.6204 -10.3725 -0.0011 21 8 9.8316 -11.7150 -0.0020 22 6 9.5061 -9.6879 1.2001 23 6 9.2980 -8.3222 1.1982 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8753 -0.6804 -0.8888 27 1 3.3695 -3.3126 0.0002 28 1 5.1438 -4.8295 0.0006 29 1 7.6652 -3.9218 0.8923 30 1 7.6661 -3.9206 -0.8876 31 1 7.0017 -6.3092 -0.8904 32 1 7.0007 -6.3112 0.8896 33 1 9.4068 -5.7132 0.8924 34 1 9.4085 -5.7112 -0.8876 35 1 9.2162 -7.7850 -2.1322 36 1 9.5975 -10.2168 -2.1379 37 1 10.7654 -11.9662 -0.0013 38 1 9.5846 -10.2214 2.1358 39 1 9.2134 -7.7880 2.1331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426444986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:51 Heat of formation + Delta-G solvation = -65.478689 kcal Electronic energy + Delta-G solvation = -19834.705746 eV Core-core repulsion = 16548.822124 eV Total energy + Delta-G solvation = -3285.883622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.16460 -39.30111 -37.57619 -35.65403 -34.16404 -33.10079 -32.24053 -31.36632 -29.72838 -27.73038 -25.49580 -23.18778 -22.62130 -21.74893 -21.31036 -20.19480 -18.79973 -18.12850 -16.47436 -16.36886 -16.29636 -15.83857 -15.46419 -15.41052 -14.41193 -14.38677 -14.25609 -13.80161 -13.71416 -13.38441 -13.02907 -12.88944 -12.38294 -12.35034 -12.29144 -11.89870 -11.82483 -11.27685 -11.03427 -10.94891 -10.81127 -10.72737 -9.94189 -9.58332 -9.43050 -9.36539 -8.83628 -8.82302 -8.72231 -7.97814 -6.18542 -4.20259 0.83495 0.97800 3.17204 3.29323 3.33634 3.39411 3.45635 3.83090 3.84388 4.36535 4.39573 4.44591 4.61134 4.78968 4.89183 4.98633 5.04574 5.12993 5.16417 5.17133 5.39470 5.42782 5.52825 5.64742 5.71512 5.93712 5.95353 6.04097 6.04949 6.27709 6.44450 6.77192 6.81019 7.14702 7.24659 7.27749 7.44082 7.60823 8.31194 8.72214 8.84675 9.24363 9.43337 10.93435 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046752 B = 0.002230 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.760871 B =12552.132106 C =12829.494891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.076 3.924 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.723 5.723 11 C 0.694 3.306 12 O -0.605 6.605 13 N -0.757 5.757 14 C 0.141 3.859 15 C -0.125 4.125 16 C -0.078 4.078 17 C -0.086 4.086 18 C -0.100 4.100 19 C -0.143 4.143 20 C 0.096 3.904 21 O -0.501 6.501 22 C -0.143 4.143 23 C -0.100 4.100 24 H 0.267 0.733 25 H 0.023 0.977 26 H 0.018 0.982 27 H 0.392 0.608 28 H 0.393 0.607 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.389 0.611 38 H 0.127 0.873 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.464 -21.035 0.026 30.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.115 3.885 10 N -0.376 5.376 11 C 0.394 3.606 12 O -0.485 6.485 13 N -0.414 5.414 14 C 0.016 3.984 15 C -0.163 4.163 16 C -0.116 4.116 17 C -0.086 4.086 18 C -0.118 4.118 19 C -0.162 4.162 20 C 0.052 3.948 21 O -0.311 6.311 22 C -0.162 4.162 23 C -0.118 4.118 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.225 0.775 28 H 0.226 0.774 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.244 0.756 38 H 0.145 0.855 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 21.391 -20.034 0.030 29.307 hybrid contribution 0.183 0.053 -0.027 0.193 sum 21.574 -19.980 0.003 29.405 Atomic orbital electron populations 1.69882 1.06205 1.27390 1.49623 1.24792 0.94801 0.99188 0.93926 0.86802 0.80597 0.83157 0.79047 1.19861 1.20953 1.18435 1.21105 0.88598 0.95188 1.53104 0.90304 1.19350 0.94789 0.77712 0.96618 1.45397 1.03760 1.11028 1.77390 1.16127 0.83536 0.82734 0.78245 1.90857 1.55441 1.43264 1.58921 1.45117 1.07534 1.06580 1.82165 1.21070 0.80915 0.94290 1.02130 1.21782 0.95773 0.95565 1.03192 1.20517 0.96195 0.91107 1.03754 1.19946 0.99517 0.96132 0.93028 1.20992 0.99185 0.93606 0.98025 1.21432 1.02335 0.94571 0.97851 1.18503 1.01076 0.82824 0.92443 1.84837 1.30851 1.18884 1.96536 1.21430 1.02339 0.94568 0.97836 1.20993 0.99206 0.93578 0.98034 0.92297 0.95927 0.96394 0.77468 0.77375 0.91938 0.91945 0.91081 0.91089 0.90372 0.90370 0.85431 0.85473 0.75564 0.85472 0.85428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.54 -15.10 9.83 -34.44 -0.34 -15.44 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 9 C 0.24 6.02 4.50 -5.20 -0.02 6.00 16 10 N -0.72 -15.20 5.55 -66.42 -0.37 -15.57 16 11 C 0.69 13.94 8.57 -86.91 -0.74 13.20 16 12 O -0.61 -14.60 16.34 5.29 0.09 -14.52 16 13 N -0.76 -10.87 5.56 -65.22 -0.36 -11.23 16 14 C 0.14 1.67 5.67 -4.04 -0.02 1.65 16 15 C -0.13 -1.04 5.31 -26.73 -0.14 -1.18 16 16 C -0.08 -0.56 5.34 -27.89 -0.15 -0.71 16 17 C -0.09 -0.67 5.13 -104.60 -0.54 -1.20 16 18 C -0.10 -0.76 9.69 -39.61 -0.38 -1.14 16 19 C -0.14 -1.12 9.99 -39.43 -0.39 -1.51 16 20 C 0.10 0.78 6.71 -39.21 -0.26 0.52 16 21 O -0.50 -3.67 13.50 -19.41 -0.26 -3.93 16 22 C -0.14 -1.12 9.99 -39.43 -0.39 -1.51 16 23 C -0.10 -0.76 9.69 -39.61 -0.38 -1.14 16 24 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 26 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 27 H 0.39 7.21 8.34 -40.82 -0.34 6.87 16 28 H 0.39 4.52 8.49 -40.82 -0.35 4.18 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 34 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 36 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.39 0.93 9.06 45.56 0.41 1.34 16 38 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 LS Contribution 336.80 15.07 5.08 5.08 Total: -1.00 -35.36 336.80 -8.44 -43.80 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -4.84 Total: 5.69 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -3.87 Total: -0.38 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.04 Total: -52.79 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.18 Total: -18.45 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.36 -8.44 -43.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426444986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.679 kcal (2) G-P(sol) polarization free energy of solvation -35.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds