Wall clock time and date at job start Tue Mar 31 2020 00:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48499 * 109.47458 * 269.99771 * 3 2 1 5 5 H 1.48503 * 109.47205 * 29.99995 * 3 2 1 6 6 H 1.48501 * 109.47194 * 149.99544 * 3 2 1 7 7 C 1.37880 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99632 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00383 * 180.02562 * 7 2 1 10 10 N 1.46492 * 109.47032 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99697 * 180.02562 * 10 9 7 12 12 O 1.21585 * 119.99958 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99698 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99833 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47476 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47501 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47322 * 179.97438 * 16 15 14 18 18 C 1.38269 * 119.94432 * 89.99694 * 17 16 15 19 19 C 1.38137 * 120.06013 * 180.02562 * 18 17 16 20 20 C 1.38737 * 119.94162 * 359.97438 * 19 18 17 21 21 O 1.35896 * 120.05545 * 180.02562 * 20 19 18 22 22 C 1.38734 * 119.88732 * 0.27760 * 20 19 18 23 23 C 1.38143 * 119.94306 * 359.42517 * 22 20 19 24 24 H 0.96998 * 119.99986 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46815 * 59.99990 * 9 7 2 26 26 H 1.08995 * 109.47107 * 300.00410 * 9 7 2 27 27 H 0.97005 * 120.00483 * 0.02562 * 10 9 7 28 28 H 0.96996 * 120.00235 * 359.97438 * 13 11 10 29 29 H 1.09000 * 109.47259 * 59.99989 * 14 13 11 30 30 H 1.08999 * 109.47530 * 300.00211 * 14 13 11 31 31 H 1.09000 * 109.46925 * 59.99736 * 15 14 13 32 32 H 1.09008 * 109.46725 * 300.00290 * 15 14 13 33 33 H 1.08997 * 109.47096 * 59.99673 * 16 15 14 34 34 H 1.09005 * 109.46515 * 299.99725 * 16 15 14 35 35 H 1.08008 * 119.96973 * 0.02562 * 18 17 16 36 36 H 1.07997 * 120.03660 * 179.97438 * 19 18 17 37 37 H 0.96700 * 114.00170 * 90.00174 * 21 20 19 38 38 H 1.07999 * 120.02623 * 179.72382 * 22 20 19 39 39 H 1.08005 * 119.97511 * 180.27480 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 5.3249 -2.8215 0.0020 12 8 6.1150 -1.8974 0.0034 13 7 5.7741 -4.0923 0.0013 14 6 7.2145 -4.3600 0.0018 15 6 7.4523 -5.8714 0.0003 16 6 8.9566 -6.1510 0.0015 17 6 9.1908 -7.6397 0.0006 18 6 9.2991 -8.3206 -1.1979 19 6 9.5134 -9.6852 -1.2015 20 6 9.6204 -10.3725 -0.0011 21 8 9.8316 -11.7150 -0.0020 22 6 9.5061 -9.6879 1.2001 23 6 9.2980 -8.3222 1.1982 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8753 -0.6804 -0.8888 27 1 3.3695 -3.3126 0.0002 28 1 5.1438 -4.8295 0.0006 29 1 7.6652 -3.9218 0.8923 30 1 7.6661 -3.9206 -0.8876 31 1 7.0017 -6.3092 -0.8904 32 1 7.0007 -6.3112 0.8896 33 1 9.4068 -5.7132 0.8924 34 1 9.4085 -5.7112 -0.8876 35 1 9.2162 -7.7850 -2.1322 36 1 9.5975 -10.2168 -2.1379 37 1 10.7654 -11.9662 -0.0013 38 1 9.5846 -10.2214 2.1358 39 1 9.2134 -7.7880 2.1331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426444986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:51 Heat of formation + Delta-G solvation = -92.384939 kcal Electronic energy + Delta-G solvation = -19835.872489 eV Core-core repulsion = 16548.822124 eV Total energy + Delta-G solvation = -3287.050364 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.91934 -40.64896 -38.17333 -36.76087 -35.97915 -34.48920 -33.87941 -31.90197 -30.75226 -29.42806 -26.41499 -24.13532 -23.72764 -22.97182 -22.10688 -21.65018 -19.81741 -19.32425 -18.27728 -17.54563 -17.05810 -16.74073 -16.57618 -16.29880 -16.09045 -15.58884 -15.29866 -15.01721 -14.62890 -14.43228 -14.37628 -14.21624 -13.88575 -13.41788 -13.05494 -13.01098 -12.77801 -12.65482 -12.45880 -11.97210 -11.91326 -11.68820 -11.63931 -11.33537 -11.28110 -10.90587 -10.28780 -9.91576 -9.62540 -9.38670 -8.38670 -6.45508 0.28232 0.42771 1.34881 1.36559 1.50217 1.90968 2.23093 2.30201 2.70178 2.96838 3.34629 3.52479 3.75288 3.91058 4.09644 4.14964 4.32095 4.37163 4.49128 4.51192 4.72636 4.77075 4.77527 4.91025 5.04068 5.06691 5.09228 5.22163 5.26477 5.31985 5.39055 5.50173 5.55315 5.60497 5.71891 5.95019 6.00331 6.30869 6.56747 6.86790 7.15659 7.28815 7.68933 8.76006 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046752 B = 0.002230 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.760871 B =12552.132106 C =12829.494891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.025 3.975 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.251 3.749 10 N -0.723 5.723 11 C 0.692 3.308 12 O -0.646 6.646 13 N -0.735 5.735 14 C 0.138 3.862 15 C -0.111 4.111 16 C -0.073 4.073 17 C -0.094 4.094 18 C -0.105 4.105 19 C -0.155 4.155 20 C 0.087 3.913 21 O -0.515 6.515 22 C -0.155 4.155 23 C -0.105 4.105 24 H 0.272 0.728 25 H 0.010 0.990 26 H 0.009 0.991 27 H 0.405 0.595 28 H 0.410 0.590 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.408 0.592 38 H 0.136 0.864 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.735 -21.621 -0.016 31.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.175 4.175 3 Si 0.763 3.237 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.127 3.873 10 N -0.377 5.377 11 C 0.392 3.608 12 O -0.529 6.529 13 N -0.392 5.392 14 C 0.014 3.986 15 C -0.149 4.149 16 C -0.111 4.111 17 C -0.094 4.094 18 C -0.123 4.123 19 C -0.173 4.173 20 C 0.042 3.958 21 O -0.328 6.328 22 C -0.173 4.173 23 C -0.123 4.123 24 H 0.082 0.918 25 H 0.028 0.972 26 H 0.027 0.973 27 H 0.240 0.760 28 H 0.246 0.754 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.267 0.733 38 H 0.154 0.846 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 22.679 -20.705 -0.013 30.708 hybrid contribution -0.184 0.089 -0.012 0.204 sum 22.495 -20.616 -0.025 30.513 Atomic orbital electron populations 1.69980 1.07666 1.28622 1.50735 1.25604 0.95577 1.02724 0.93599 0.85834 0.79222 0.79201 0.79487 1.18936 1.19763 1.18491 1.21286 0.89920 0.94597 1.52593 0.92289 1.18941 0.93003 0.79908 0.95494 1.45124 1.04728 1.09899 1.77953 1.16264 0.82632 0.84008 0.77902 1.90827 1.56238 1.45119 1.60730 1.44991 1.09146 1.04971 1.80090 1.21268 0.78914 0.96799 1.01587 1.21668 0.96830 0.92589 1.03783 1.20473 0.95230 0.90939 1.04445 1.20017 0.99943 0.96270 0.93169 1.21202 0.98824 0.93684 0.98622 1.21618 1.02575 0.94906 0.98244 1.18684 1.01121 0.83159 0.92797 1.84777 1.32879 1.18574 1.96537 1.21616 1.02585 0.94906 0.98228 1.21202 0.98844 0.93653 0.98632 0.91837 0.97195 0.97301 0.75992 0.75395 0.92536 0.92524 0.90476 0.90491 0.89762 0.89754 0.84204 0.84569 0.73296 0.84574 0.84206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.95 13.96 21.45 0.30 -55.65 16 2 C 0.03 1.44 5.47 84.66 0.46 1.90 16 3 Si 0.94 44.53 27.47 68.60 1.88 46.42 16 4 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.26 -12.31 6.54 99.48 0.65 -11.66 16 7 C -0.55 -30.56 9.83 25.60 0.25 -30.30 16 8 H 0.06 3.45 7.84 -2.91 -0.02 3.43 16 9 C 0.25 12.63 4.50 85.63 0.38 13.02 16 10 N -0.72 -29.90 5.55 -482.31 -2.68 -32.57 16 11 C 0.69 27.10 8.57 179.05 1.53 28.63 16 12 O -0.65 -30.83 16.34 -3.98 -0.07 -30.90 16 13 N -0.73 -19.76 5.56 -478.53 -2.66 -22.42 16 14 C 0.14 3.02 5.67 86.38 0.49 3.51 16 15 C -0.11 -1.56 5.31 30.59 0.16 -1.40 16 16 C -0.07 -0.88 5.34 29.85 0.16 -0.72 16 17 C -0.09 -1.27 5.13 -19.85 -0.10 -1.37 16 18 C -0.11 -1.42 9.69 22.25 0.22 -1.20 16 19 C -0.16 -2.21 9.99 22.37 0.22 -1.99 16 20 C 0.09 1.32 6.71 22.51 0.15 1.47 16 21 O -0.51 -6.96 13.50 -92.38 -1.25 -8.21 16 22 C -0.15 -2.21 9.99 22.37 0.22 -1.99 16 23 C -0.11 -1.42 9.69 22.25 0.22 -1.20 16 24 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 25 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 26 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 27 H 0.40 14.52 8.34 -92.70 -0.77 13.75 16 28 H 0.41 8.44 8.49 -92.71 -0.79 7.65 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 34 H 0.08 0.93 8.09 -2.38 -0.02 0.91 16 35 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 36 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.41 1.47 9.06 -74.06 -0.67 0.80 16 38 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -74.89 336.80 -1.30 -76.19 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -1.20 Total: 18.80 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 4.37 Total: 8.35 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -5.04 Total: -110.65 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -1.31 Total: -39.11 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.42 kcal Total: -74.89 -1.30 -76.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426444986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.192 kcal (2) G-P(sol) polarization free energy of solvation -74.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds