Wall clock time and date at job start Tue Mar 31 2020 00:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00000 * 2 1 4 4 H 1.48506 * 109.47110 * 239.99927 * 3 2 1 5 5 H 1.48499 * 109.46997 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47385 * 120.00242 * 3 2 1 7 7 C 1.37878 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00167 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00237 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47471 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00405 * 179.97438 * 10 9 7 12 12 O 1.21589 * 119.99458 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00209 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00094 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47425 * 180.02562 * 14 13 11 16 16 O 1.42903 * 109.46972 * 65.00259 * 15 14 13 17 17 C 1.42893 * 113.99793 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 89.99993 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 16 24 24 H 0.96998 * 119.99958 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47041 * 59.99930 * 9 7 2 26 26 H 1.09013 * 109.46941 * 300.00158 * 9 7 2 27 27 H 0.97005 * 119.99694 * 0.02562 * 10 9 7 28 28 H 0.97005 * 119.99889 * 0.02562 * 13 11 10 29 29 H 1.09006 * 109.46616 * 60.00435 * 14 13 11 30 30 H 1.08996 * 109.47372 * 300.01006 * 14 13 11 31 31 H 1.09005 * 109.47112 * 305.00329 * 15 14 13 32 32 H 1.08993 * 109.47202 * 185.00432 * 15 14 13 33 33 H 1.09005 * 109.47744 * 60.00256 * 17 16 15 34 34 H 1.09000 * 109.47353 * 299.99456 * 17 16 15 35 35 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 36 36 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 37 37 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 39 39 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8834 0.0000 12 8 0.5585 -5.1055 0.0000 13 7 2.6297 -5.9078 -0.0005 14 6 2.1414 -7.2890 0.0006 15 6 3.3314 -8.2507 0.0004 16 8 4.0605 -8.1065 1.2209 17 6 5.1988 -8.9643 1.3226 18 6 5.8890 -8.7288 2.6415 19 6 5.5243 -9.4646 3.7535 20 6 6.1578 -9.2490 4.9631 21 6 7.1563 -8.2980 5.0605 22 6 7.5173 -7.5585 3.9498 23 6 6.8871 -7.7774 2.7391 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8898 27 1 3.1568 -3.4354 -0.0002 28 1 3.5834 -5.7305 -0.0009 29 1 1.5349 -7.4606 -0.8888 30 1 1.5367 -7.4599 0.8912 31 1 3.9839 -8.0210 -0.8420 32 1 2.9705 -9.2753 -0.0884 33 1 5.8901 -8.7491 0.5077 34 1 4.8770 -10.0039 1.2611 35 1 4.7445 -10.2080 3.6772 36 1 5.8726 -9.8235 5.8319 37 1 7.6515 -8.1299 6.0055 38 1 8.2944 -6.8125 4.0269 39 1 7.1725 -7.2031 1.8701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426453408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:41 Heat of formation + Delta-G solvation = -58.162550 kcal Electronic energy + Delta-G solvation = -20244.464852 eV Core-core repulsion = 16958.898482 eV Total energy + Delta-G solvation = -3285.566370 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.65924 -39.11909 -37.86154 -34.60198 -33.87429 -32.34703 -32.04650 -31.14752 -29.28663 -26.86621 -26.02351 -23.06611 -22.83733 -21.95692 -21.55445 -20.10990 -18.04852 -17.24476 -16.89806 -16.40203 -16.06379 -15.63591 -15.46078 -14.90728 -14.66531 -14.45007 -14.18161 -13.66542 -13.43578 -13.19852 -13.08936 -12.77174 -12.48970 -12.23224 -11.89656 -11.67050 -11.41429 -11.27796 -11.16877 -10.92416 -10.82293 -10.25163 -9.90602 -9.33247 -9.31749 -9.15890 -9.09349 -8.70016 -8.59179 -7.66748 -6.09993 -4.16281 1.00861 1.16366 3.25780 3.29468 3.33412 3.35123 3.50228 3.83003 4.06573 4.37623 4.52777 4.53802 4.75502 4.84552 4.92708 4.95586 5.03695 5.07278 5.15588 5.25808 5.27146 5.31566 5.39401 5.70886 5.75318 5.78420 5.97434 6.19124 6.25956 6.32943 6.72828 6.88767 6.99953 7.20937 7.59551 7.62925 7.64554 7.98711 8.12040 8.83080 9.03406 9.41117 9.55754 11.00341 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016887 B = 0.003096 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.647907 B = 9041.229965 C =10249.345084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.730 5.730 11 C 0.693 3.307 12 O -0.604 6.604 13 N -0.753 5.753 14 C 0.145 3.855 15 C 0.050 3.950 16 O -0.375 6.375 17 C 0.102 3.898 18 C -0.091 4.091 19 C -0.099 4.099 20 C -0.125 4.125 21 C -0.115 4.115 22 C -0.123 4.123 23 C -0.097 4.097 24 H 0.266 0.734 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.386 0.614 28 H 0.393 0.607 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.028 -20.853 4.717 26.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.382 5.382 11 C 0.393 3.607 12 O -0.484 6.484 13 N -0.411 5.411 14 C 0.020 3.980 15 C -0.027 4.027 16 O -0.295 6.295 17 C 0.026 3.974 18 C -0.091 4.091 19 C -0.117 4.117 20 C -0.143 4.143 21 C -0.133 4.133 22 C -0.141 4.141 23 C -0.115 4.115 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.218 0.782 28 H 0.226 0.774 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 14.648 -20.767 4.854 25.873 hybrid contribution 1.385 0.908 -0.139 1.662 sum 16.033 -19.859 4.715 25.955 Atomic orbital electron populations 1.69973 1.06083 1.27312 1.49009 1.24946 0.94911 0.99365 0.94830 0.86472 0.79390 0.82365 0.78634 1.20121 1.21105 1.20098 1.21206 0.93233 0.90500 1.53031 0.92022 1.18957 0.87801 0.81082 0.97551 1.45693 1.10722 1.04449 1.77344 1.16148 0.85174 0.81096 0.78332 1.90863 1.14300 1.84315 1.58883 1.45039 1.08917 1.04846 1.82274 1.21063 0.94295 0.79874 1.02780 1.22840 0.93709 0.99199 0.86915 1.88073 1.40737 1.62152 1.38518 1.21300 0.87768 0.93983 0.94358 1.19608 0.96935 0.97669 0.94869 1.21070 0.98861 0.99438 0.92328 1.21155 0.96798 0.98716 0.97603 1.21216 0.97468 0.96041 0.98621 1.21180 1.00316 0.99716 0.92907 1.21095 0.95789 0.96553 0.98111 0.92448 0.95783 0.95801 0.78212 0.77356 0.90414 0.91176 0.92553 0.91752 0.92412 0.92478 0.85969 0.85942 0.86027 0.85830 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.54 -15.14 9.28 -34.44 -0.32 -15.46 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.27 7.42 5.43 -5.20 -0.03 7.39 16 10 N -0.73 -16.45 5.55 -66.42 -0.37 -16.82 16 11 C 0.69 15.13 8.57 -86.92 -0.74 14.39 16 12 O -0.60 -15.78 16.34 5.29 0.09 -15.70 16 13 N -0.75 -12.09 5.51 -65.23 -0.36 -12.45 16 14 C 0.14 1.94 6.06 -4.04 -0.02 1.92 16 15 C 0.05 0.48 6.07 37.16 0.23 0.71 16 16 O -0.38 -4.26 10.27 -35.23 -0.36 -4.62 16 17 C 0.10 0.89 6.06 36.01 0.22 1.11 16 18 C -0.09 -0.89 5.51 -104.62 -0.58 -1.47 16 19 C -0.10 -0.92 9.70 -39.58 -0.38 -1.30 16 20 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 21 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 22 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 23 C -0.10 -0.93 9.70 -39.58 -0.38 -1.31 16 24 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.02 0.73 8.14 -51.92 -0.42 0.31 16 27 H 0.39 7.48 8.34 -40.82 -0.34 7.14 16 28 H 0.39 5.33 8.49 -40.82 -0.35 4.98 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 35 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 37 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 341.84 15.07 5.15 5.15 Total: -1.00 -35.12 341.84 -9.16 -44.28 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.71 Total: 6.59 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -3.31 Total: 3.31 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.01 Total: -55.24 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.28 Total: -20.32 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.12 -9.16 -44.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426453408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.884 kcal (2) G-P(sol) polarization free energy of solvation -35.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds