Wall clock time and date at job start Tue Mar 31 2020 00:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00000 * 2 1 4 4 H 1.48506 * 109.47110 * 239.99927 * 3 2 1 5 5 H 1.48499 * 109.46997 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47385 * 120.00242 * 3 2 1 7 7 C 1.37878 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00167 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00237 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47471 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00405 * 179.97438 * 10 9 7 12 12 O 1.21589 * 119.99458 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00209 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00094 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47425 * 180.02562 * 14 13 11 16 16 O 1.42903 * 109.46972 * 65.00259 * 15 14 13 17 17 C 1.42893 * 113.99793 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 89.99993 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 16 24 24 H 0.96998 * 119.99958 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47041 * 59.99930 * 9 7 2 26 26 H 1.09013 * 109.46941 * 300.00158 * 9 7 2 27 27 H 0.97005 * 119.99694 * 0.02562 * 10 9 7 28 28 H 0.97005 * 119.99889 * 0.02562 * 13 11 10 29 29 H 1.09006 * 109.46616 * 60.00435 * 14 13 11 30 30 H 1.08996 * 109.47372 * 300.01006 * 14 13 11 31 31 H 1.09005 * 109.47112 * 305.00329 * 15 14 13 32 32 H 1.08993 * 109.47202 * 185.00432 * 15 14 13 33 33 H 1.09005 * 109.47744 * 60.00256 * 17 16 15 34 34 H 1.09000 * 109.47353 * 299.99456 * 17 16 15 35 35 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 36 36 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 37 37 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 39 39 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8834 0.0000 12 8 0.5585 -5.1055 0.0000 13 7 2.6297 -5.9078 -0.0005 14 6 2.1414 -7.2890 0.0006 15 6 3.3314 -8.2507 0.0004 16 8 4.0605 -8.1065 1.2209 17 6 5.1988 -8.9643 1.3226 18 6 5.8890 -8.7288 2.6415 19 6 5.5243 -9.4646 3.7535 20 6 6.1578 -9.2490 4.9631 21 6 7.1563 -8.2980 5.0605 22 6 7.5173 -7.5585 3.9498 23 6 6.8871 -7.7774 2.7391 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8898 27 1 3.1568 -3.4354 -0.0002 28 1 3.5834 -5.7305 -0.0009 29 1 1.5349 -7.4606 -0.8888 30 1 1.5367 -7.4599 0.8912 31 1 3.9839 -8.0210 -0.8420 32 1 2.9705 -9.2753 -0.0884 33 1 5.8901 -8.7491 0.5077 34 1 4.8770 -10.0039 1.2611 35 1 4.7445 -10.2080 3.6772 36 1 5.8726 -9.8235 5.8319 37 1 7.6515 -8.1299 6.0055 38 1 8.2944 -6.8125 4.0269 39 1 7.1725 -7.2031 1.8701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426453408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:40 Heat of formation + Delta-G solvation = -83.615189 kcal Electronic energy + Delta-G solvation = -20245.568562 eV Core-core repulsion = 16958.898482 eV Total energy + Delta-G solvation = -3286.670079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.87502 -40.24518 -38.71927 -36.28159 -35.61506 -34.32422 -32.89320 -31.78074 -30.56296 -28.74868 -26.75892 -24.84085 -23.47686 -23.30063 -22.21153 -21.87629 -19.83380 -18.08517 -17.94018 -17.69707 -17.40627 -16.85943 -16.42457 -16.36886 -16.23780 -15.57013 -15.30560 -14.85016 -14.65434 -14.46668 -14.25727 -14.00926 -13.77537 -13.47628 -13.27670 -12.96382 -12.87160 -12.66359 -12.29177 -12.21951 -11.90053 -11.82195 -11.48860 -11.25383 -10.78272 -10.58301 -10.25410 -9.81517 -9.75237 -9.55597 -8.27077 -6.43813 0.34859 0.50687 1.43923 1.48872 1.56843 1.93627 2.26825 2.41150 2.57887 3.07528 3.13397 3.59047 3.82774 3.94054 4.09220 4.16410 4.24522 4.29829 4.38290 4.46522 4.52825 4.65904 4.70720 4.78369 4.88594 5.09486 5.10373 5.16223 5.28222 5.49858 5.55319 5.56539 5.61894 5.67223 5.69507 5.86497 6.10424 6.24095 6.28711 6.67756 7.25432 7.33294 7.74416 8.85272 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016887 B = 0.003096 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.647907 B = 9041.229965 C =10249.345084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.286 3.714 10 N -0.724 5.724 11 C 0.689 3.311 12 O -0.651 6.651 13 N -0.728 5.728 14 C 0.138 3.862 15 C 0.060 3.940 16 O -0.403 6.403 17 C 0.102 3.898 18 C -0.109 4.109 19 C -0.114 4.114 20 C -0.135 4.135 21 C -0.125 4.125 22 C -0.136 4.136 23 C -0.114 4.114 24 H 0.269 0.731 25 H -0.013 1.013 26 H -0.017 1.017 27 H 0.404 0.596 28 H 0.410 0.590 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.639 -21.111 4.621 28.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.594 4.594 8 H 0.101 0.899 9 C 0.162 3.838 10 N -0.378 5.378 11 C 0.389 3.611 12 O -0.535 6.535 13 N -0.386 5.386 14 C 0.014 3.986 15 C -0.016 4.016 16 O -0.323 6.323 17 C 0.026 3.974 18 C -0.109 4.109 19 C -0.132 4.132 20 C -0.153 4.153 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.132 4.132 24 H 0.078 0.922 25 H 0.004 0.996 26 H 0.001 0.999 27 H 0.239 0.761 28 H 0.246 0.754 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 17.345 -21.088 4.756 27.716 hybrid contribution 0.566 0.876 -0.070 1.045 sum 17.911 -20.212 4.686 27.410 Atomic orbital electron populations 1.70142 1.08301 1.28655 1.49892 1.26089 0.95804 1.03919 0.93822 0.85172 0.77874 0.76435 0.79495 1.18550 1.21009 1.18719 1.21578 0.94300 0.90504 1.53046 0.89870 1.18397 0.88112 0.83380 0.93875 1.45301 1.10837 1.03902 1.77764 1.16354 0.85144 0.81684 0.77943 1.90828 1.16744 1.85024 1.60865 1.44875 1.08969 1.04667 1.80087 1.21306 0.96330 0.78876 1.02081 1.22794 0.92448 0.99232 0.87118 1.88021 1.41793 1.63220 1.39311 1.21428 0.87205 0.94429 0.94321 1.19875 0.97341 0.98004 0.95670 1.21336 0.99355 0.99881 0.92637 1.21470 0.96735 0.98926 0.98138 1.21537 0.97503 0.95819 0.99427 1.21479 1.00731 1.00174 0.92959 1.21342 0.96122 0.96892 0.98798 0.92209 0.99553 0.99910 0.76112 0.75448 0.90038 0.93126 0.90395 0.88915 0.90831 0.90816 0.84983 0.84200 0.84156 0.84352 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.99 43.01 29.54 68.60 2.03 45.03 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 7 C -0.56 -31.20 9.28 25.60 0.24 -30.96 16 8 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 9 C 0.29 16.45 5.43 85.63 0.46 16.92 16 10 N -0.72 -32.99 5.55 -482.30 -2.68 -35.67 16 11 C 0.69 30.48 8.57 179.05 1.53 32.01 16 12 O -0.65 -35.24 16.34 -4.00 -0.07 -35.31 16 13 N -0.73 -22.70 5.51 -478.54 -2.64 -25.33 16 14 C 0.14 3.55 6.06 86.38 0.52 4.08 16 15 C 0.06 0.99 6.07 71.98 0.44 1.43 16 16 O -0.40 -8.28 10.27 -148.98 -1.53 -9.81 16 17 C 0.10 1.54 6.06 71.24 0.43 1.97 16 18 C -0.11 -1.99 5.51 -19.86 -0.11 -2.10 16 19 C -0.11 -2.00 9.70 22.27 0.22 -1.78 16 20 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 21 C -0.12 -1.97 10.05 22.27 0.22 -1.74 16 22 C -0.14 -2.25 10.05 22.27 0.22 -2.03 16 23 C -0.11 -2.03 9.70 22.27 0.22 -1.81 16 24 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 25 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 26 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 27 H 0.40 15.28 8.34 -92.70 -0.77 14.51 16 28 H 0.41 10.27 8.49 -92.70 -0.79 9.49 16 29 H 0.08 2.06 8.14 -2.38 -0.02 2.05 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 0.86 8.08 -2.38 -0.02 0.84 16 34 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 35 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -78.47 341.84 -0.02 -78.49 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: -0.50 Total: 25.02 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 5.08 Total: 14.66 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -5.03 Total: -118.08 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -1.60 Total: -45.12 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -78.47 -0.02 -78.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426453408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.126 kcal (2) G-P(sol) polarization free energy of solvation -78.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds