Wall clock time and date at job start Mon Mar 30 2020 23:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86795 * 120.00285 * 2 1 4 4 H 1.48504 * 109.47090 * 90.00124 * 3 2 1 5 5 H 1.48503 * 109.46880 * 210.00011 * 3 2 1 6 6 H 1.48497 * 109.46982 * 329.99807 * 3 2 1 7 7 C 1.40048 * 119.99600 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00165 * 179.97438 * 7 2 1 9 9 C 1.46378 * 120.00198 * 359.97438 * 7 2 1 10 10 O 1.21691 * 119.99541 * 354.84525 * 9 7 2 11 11 N 1.34769 * 120.00269 * 174.84620 * 9 7 2 12 12 C 1.46966 * 120.59273 * 5.19401 * 11 9 7 13 13 C 1.53812 * 108.39931 * 124.76285 * 12 11 9 14 14 N 1.46962 * 108.58123 * 49.63123 * 13 12 11 15 15 C 1.34778 * 120.58971 * 124.66726 * 14 13 12 16 16 O 1.21614 * 119.99754 * 185.44859 * 15 14 13 17 17 C 1.47097 * 120.00149 * 5.45667 * 15 14 13 18 18 C 1.32997 * 120.00084 * 172.63432 * 17 15 14 19 19 C 1.50697 * 119.99898 * 352.72552 * 18 17 15 20 20 C 1.53008 * 117.49844 * 180.29534 * 19 18 17 21 21 C 1.53004 * 117.49882 * 111.63970 * 19 18 17 22 22 C 1.46958 * 118.81679 * 304.65339 * 14 13 12 23 23 C 1.46967 * 120.59526 * 185.47270 * 11 9 7 24 24 H 0.97002 * 119.99420 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.61024 * 244.53985 * 12 11 9 26 26 H 1.08999 * 109.61154 * 5.05206 * 12 11 9 27 27 H 1.09006 * 109.73932 * 289.84806 * 13 12 11 28 28 H 1.09000 * 109.53530 * 169.30501 * 13 12 11 29 29 H 1.08003 * 120.00336 * 352.62219 * 17 15 14 30 30 H 1.08000 * 120.00041 * 172.73358 * 18 17 15 31 31 H 1.08999 * 115.54925 * 325.96494 * 19 18 17 32 32 H 1.08998 * 117.49469 * 0.02562 * 20 19 18 33 33 H 1.08999 * 117.49578 * 145.01826 * 20 19 18 34 34 H 1.09002 * 117.49735 * 214.97826 * 21 19 18 35 35 H 1.08999 * 117.49781 * 359.97074 * 21 19 18 36 36 H 1.09004 * 109.61129 * 295.48171 * 22 14 13 37 37 H 1.08996 * 109.61479 * 174.96850 * 22 14 13 38 38 H 1.09000 * 109.61119 * 354.94989 * 23 11 9 39 39 H 1.09006 * 109.60710 * 115.45790 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4884 2.0463 1.4001 5 1 3.5384 1.4400 -0.7001 6 1 1.4383 2.6526 -0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2130 -0.0010 9 6 1.2750 -2.4806 -0.0005 10 8 0.0618 -2.4826 0.0946 11 7 1.9446 -3.6454 -0.1059 12 6 3.4141 -3.6658 -0.1072 13 6 3.8875 -4.6096 1.0113 14 7 3.1613 -5.8814 0.8896 15 6 3.8310 -7.0462 0.7841 16 8 3.2237 -8.0808 0.5845 17 6 5.2964 -7.0662 0.9105 18 6 5.9444 -8.2268 0.9533 19 6 5.1723 -9.5182 1.0379 20 6 5.9755 -10.8194 1.0911 21 6 5.2089 -10.4442 -0.1796 22 6 1.6918 -5.8604 0.8852 23 6 1.2184 -4.9173 -0.2277 24 1 -0.4849 0.8401 0.0004 25 1 3.7741 -4.0268 -1.0707 26 1 3.7942 -2.6606 0.0749 27 1 3.6802 -4.1616 1.9833 28 1 4.9579 -4.7882 0.9089 29 1 5.8461 -6.1384 0.9683 30 1 7.0240 -8.2438 0.9277 31 1 4.2454 -9.4752 1.6099 32 1 7.0624 -10.7413 1.0653 33 1 5.5768 -11.6325 1.6978 34 1 4.3061 -11.0106 -0.4084 35 1 5.7910 -10.1191 -1.0418 36 1 1.3282 -5.5015 1.8481 37 1 1.3121 -6.8651 0.6994 38 1 0.1481 -4.7387 -0.1252 39 1 1.4257 -5.3652 -1.1996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492956684.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:38 Heat of formation + Delta-G solvation = -7.349455 kcal Electronic energy + Delta-G solvation = -21558.361218 eV Core-core repulsion = 18274.998269 eV Total energy + Delta-G solvation = -3283.362949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.05426 -38.22914 -37.20062 -35.74773 -33.14951 -32.56853 -32.47560 -30.84322 -27.45452 -26.19544 -24.23245 -23.04622 -22.45139 -22.02020 -20.80147 -19.40197 -18.18265 -17.32921 -16.21103 -15.93703 -15.76420 -15.24346 -14.80904 -14.52578 -14.42588 -14.16528 -14.00333 -13.52051 -13.15243 -12.87212 -12.51636 -11.95065 -11.74090 -11.65755 -11.64364 -11.41672 -11.21321 -11.11905 -11.00394 -10.94525 -10.72604 -10.36936 -10.28275 -10.09990 -9.44349 -9.13907 -8.93897 -8.54027 -7.66812 -7.24838 -6.26816 -4.72721 1.30527 3.08986 3.15674 3.18577 3.21153 3.34228 3.89173 4.02514 4.40786 4.49292 4.52121 4.64625 4.85028 4.97846 5.14322 5.21107 5.32899 5.39614 5.49860 5.54776 5.58909 5.65468 5.76870 5.92482 5.96109 6.00148 6.03053 6.14462 6.19166 6.28354 6.37616 6.41228 6.53309 6.79235 7.37730 7.48909 7.64462 8.03281 8.25160 8.37183 8.94636 9.33589 10.49567 10.67982 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039695 B = 0.003620 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.208327 B = 7731.925645 C = 8265.384447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.576 6.576 11 N -0.643 5.643 12 C 0.109 3.891 13 C 0.088 3.912 14 N -0.602 5.602 15 C 0.542 3.458 16 O -0.544 6.544 17 C -0.214 4.214 18 C -0.041 4.041 19 C -0.121 4.121 20 C -0.190 4.190 21 C -0.156 4.156 22 C 0.100 3.900 23 C 0.108 3.892 24 H 0.269 0.731 25 H 0.047 0.953 26 H 0.106 0.894 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.622 -12.926 2.105 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.188 1.188 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.458 6.458 11 N -0.382 5.382 12 C -0.017 4.017 13 C -0.035 4.035 14 N -0.334 5.334 15 C 0.333 3.667 16 O -0.424 6.424 17 C -0.235 4.235 18 C -0.061 4.061 19 C -0.139 4.139 20 C -0.227 4.227 21 C -0.193 4.193 22 C -0.023 4.023 23 C -0.017 4.017 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.123 0.877 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.150 0.850 30 H 0.142 0.858 31 H 0.147 0.853 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.400 -13.318 2.046 18.312 hybrid contribution 0.649 0.996 -0.019 1.189 sum 13.049 -12.322 2.027 18.062 Atomic orbital electron populations 1.70013 1.07106 1.27431 1.34958 1.25736 0.94629 1.00357 0.92552 0.86374 0.80156 0.81395 0.78877 1.19684 1.18844 1.20438 1.20947 0.93506 0.89184 1.54504 0.90881 1.18292 0.86955 0.82138 0.76117 1.90599 1.14388 1.85938 1.54866 1.48181 1.04429 1.05950 1.79613 1.21900 0.83350 1.00394 0.96037 1.22455 0.96136 0.84121 1.00824 1.48005 1.07313 1.06393 1.71722 1.18583 0.88047 0.83105 0.77005 1.90722 1.70082 1.31837 1.49808 1.22766 0.94007 0.99115 1.07563 1.23070 0.98816 0.92677 0.91492 1.21466 1.00703 0.88140 1.03600 1.23094 0.98534 0.99084 1.01939 1.22789 1.02299 1.02413 0.91764 1.22058 0.78945 1.01243 1.00095 1.21506 0.99161 0.85106 0.95954 0.91991 0.93443 0.87652 0.90874 0.89541 0.84987 0.85755 0.85323 0.89031 0.88799 0.88627 0.89101 0.91398 0.89002 0.88652 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.45 11.84 55.55 0.66 -21.79 16 2 C 0.09 2.35 5.50 -17.36 -0.10 2.26 16 3 Si 0.91 19.34 29.56 -169.99 -5.02 14.31 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.54 -14.63 8.86 -35.63 -0.32 -14.95 16 8 H 0.07 1.75 5.67 -52.49 -0.30 1.45 16 9 C 0.56 15.42 7.61 -12.99 -0.10 15.32 16 10 O -0.58 -18.23 14.45 5.20 0.08 -18.15 16 11 N -0.64 -14.19 2.94 -173.87 -0.51 -14.70 16 12 C 0.11 1.88 6.51 -3.37 -0.02 1.86 16 13 C 0.09 1.25 6.50 -3.37 -0.02 1.23 16 14 N -0.60 -9.39 2.95 -173.62 -0.51 -9.90 16 15 C 0.54 8.18 7.53 -12.67 -0.10 8.09 16 16 O -0.54 -9.44 12.81 5.27 0.07 -9.37 16 17 C -0.21 -2.45 9.34 -37.81 -0.35 -2.80 16 18 C -0.04 -0.42 9.74 -36.13 -0.35 -0.77 16 19 C -0.12 -1.37 4.26 -91.77 -0.39 -1.76 16 20 C -0.19 -1.68 10.24 -26.69 -0.27 -1.95 16 21 C -0.16 -1.62 10.24 -26.69 -0.27 -1.89 16 22 C 0.10 1.70 6.60 -3.60 -0.02 1.68 16 23 C 0.11 2.13 6.60 -3.60 -0.02 2.11 16 24 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.11 1.85 5.34 -51.93 -0.28 1.57 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.09 0.91 5.35 -51.93 -0.28 0.63 16 29 H 0.13 1.19 5.89 -52.48 -0.31 0.88 16 30 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.13 1.77 6.39 -51.93 -0.33 1.44 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.09 1.52 6.99 -51.93 -0.36 1.16 16 38 H 0.10 2.07 6.99 -51.93 -0.36 1.71 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 319.50 15.07 4.81 4.81 Total: -1.00 -34.16 319.50 -7.93 -42.09 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.16 Total: 4.28 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -2.34 Total: 8.41 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: -0.37 Total: -46.39 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: 0.14 Total: -27.52 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.16 -7.93 -42.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492956684.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.739 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds