Wall clock time and date at job start Mon Mar 30 2020 23:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86795 * 120.00285 * 2 1 4 4 H 1.48504 * 109.47090 * 90.00124 * 3 2 1 5 5 H 1.48503 * 109.46880 * 210.00011 * 3 2 1 6 6 H 1.48497 * 109.46982 * 329.99807 * 3 2 1 7 7 C 1.40048 * 119.99600 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00165 * 179.97438 * 7 2 1 9 9 C 1.46378 * 120.00198 * 359.97438 * 7 2 1 10 10 O 1.21691 * 119.99541 * 354.84525 * 9 7 2 11 11 N 1.34769 * 120.00269 * 174.84620 * 9 7 2 12 12 C 1.46966 * 120.59273 * 5.19401 * 11 9 7 13 13 C 1.53812 * 108.39931 * 124.76285 * 12 11 9 14 14 N 1.46962 * 108.58123 * 49.63123 * 13 12 11 15 15 C 1.34778 * 120.58971 * 124.66726 * 14 13 12 16 16 O 1.21614 * 119.99754 * 185.44859 * 15 14 13 17 17 C 1.47097 * 120.00149 * 5.45667 * 15 14 13 18 18 C 1.32997 * 120.00084 * 172.63432 * 17 15 14 19 19 C 1.50697 * 119.99898 * 352.72552 * 18 17 15 20 20 C 1.53008 * 117.49844 * 180.29534 * 19 18 17 21 21 C 1.53004 * 117.49882 * 111.63970 * 19 18 17 22 22 C 1.46958 * 118.81679 * 304.65339 * 14 13 12 23 23 C 1.46967 * 120.59526 * 185.47270 * 11 9 7 24 24 H 0.97002 * 119.99420 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.61024 * 244.53985 * 12 11 9 26 26 H 1.08999 * 109.61154 * 5.05206 * 12 11 9 27 27 H 1.09006 * 109.73932 * 289.84806 * 13 12 11 28 28 H 1.09000 * 109.53530 * 169.30501 * 13 12 11 29 29 H 1.08003 * 120.00336 * 352.62219 * 17 15 14 30 30 H 1.08000 * 120.00041 * 172.73358 * 18 17 15 31 31 H 1.08999 * 115.54925 * 325.96494 * 19 18 17 32 32 H 1.08998 * 117.49469 * 0.02562 * 20 19 18 33 33 H 1.08999 * 117.49578 * 145.01826 * 20 19 18 34 34 H 1.09002 * 117.49735 * 214.97826 * 21 19 18 35 35 H 1.08999 * 117.49781 * 359.97074 * 21 19 18 36 36 H 1.09004 * 109.61129 * 295.48171 * 22 14 13 37 37 H 1.08996 * 109.61479 * 174.96850 * 22 14 13 38 38 H 1.09000 * 109.61119 * 354.94989 * 23 11 9 39 39 H 1.09006 * 109.60710 * 115.45790 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4884 2.0463 1.4001 5 1 3.5384 1.4400 -0.7001 6 1 1.4383 2.6526 -0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2130 -0.0010 9 6 1.2750 -2.4806 -0.0005 10 8 0.0618 -2.4826 0.0946 11 7 1.9446 -3.6454 -0.1059 12 6 3.4141 -3.6658 -0.1072 13 6 3.8875 -4.6096 1.0113 14 7 3.1613 -5.8814 0.8896 15 6 3.8310 -7.0462 0.7841 16 8 3.2237 -8.0808 0.5845 17 6 5.2964 -7.0662 0.9105 18 6 5.9444 -8.2268 0.9533 19 6 5.1723 -9.5182 1.0379 20 6 5.9755 -10.8194 1.0911 21 6 5.2089 -10.4442 -0.1796 22 6 1.6918 -5.8604 0.8852 23 6 1.2184 -4.9173 -0.2277 24 1 -0.4849 0.8401 0.0004 25 1 3.7741 -4.0268 -1.0707 26 1 3.7942 -2.6606 0.0749 27 1 3.6802 -4.1616 1.9833 28 1 4.9579 -4.7882 0.9089 29 1 5.8461 -6.1384 0.9683 30 1 7.0240 -8.2438 0.9277 31 1 4.2454 -9.4752 1.6099 32 1 7.0624 -10.7413 1.0653 33 1 5.5768 -11.6325 1.6978 34 1 4.3061 -11.0106 -0.4084 35 1 5.7910 -10.1191 -1.0418 36 1 1.3282 -5.5015 1.8481 37 1 1.3121 -6.8651 0.6994 38 1 0.1481 -4.7387 -0.1252 39 1 1.4257 -5.3652 -1.1996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492956684.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:37 Heat of formation + Delta-G solvation = -29.993916 kcal Electronic energy + Delta-G solvation = -21559.343156 eV Core-core repulsion = 18274.998269 eV Total energy + Delta-G solvation = -3284.344886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.29534 -39.78660 -38.29171 -37.31334 -34.83266 -34.43648 -33.58903 -32.20624 -29.13087 -27.93615 -25.48377 -24.36239 -23.39897 -23.14140 -22.03776 -20.90829 -19.55933 -18.54403 -18.01682 -17.43486 -17.00540 -16.53894 -16.22687 -15.90077 -15.87821 -15.63921 -15.37758 -14.54152 -14.47350 -14.31145 -13.86871 -13.58796 -13.37858 -13.12231 -12.82288 -12.72379 -12.60037 -12.39837 -12.33651 -12.29223 -11.98413 -11.94777 -11.88746 -11.18328 -10.92572 -10.54099 -10.09664 -9.88298 -9.78388 -8.97762 -8.28613 -6.83663 0.42463 1.43086 1.44232 1.59598 1.97387 2.26132 2.27445 2.47221 2.82401 3.11010 3.57649 3.61081 3.73688 3.96559 4.01777 4.09260 4.17231 4.20443 4.28974 4.43868 4.48397 4.50191 4.63602 4.70292 4.78126 4.80780 4.84428 5.02522 5.08002 5.22584 5.28669 5.34961 5.39504 5.48585 5.61275 5.72495 6.12112 6.32027 6.50521 6.88576 7.21030 7.39999 8.45525 8.67494 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039695 B = 0.003620 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.208327 B = 7731.925645 C = 8265.384447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.027 3.973 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.242 1.242 6 H -0.279 1.279 7 C -0.565 4.565 8 H 0.102 0.898 9 C 0.540 3.460 10 O -0.633 6.633 11 N -0.646 5.646 12 C 0.103 3.897 13 C 0.097 3.903 14 N -0.607 5.607 15 C 0.535 3.465 16 O -0.575 6.575 17 C -0.230 4.230 18 C -0.020 4.020 19 C -0.147 4.147 20 C -0.164 4.164 21 C -0.166 4.166 22 C 0.113 3.887 23 C 0.111 3.889 24 H 0.273 0.727 25 H 0.062 0.938 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.135 0.865 29 H 0.164 0.836 30 H 0.166 0.834 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.172 -12.889 2.300 22.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.188 4.188 3 Si 0.817 3.183 4 H -0.186 1.186 5 H -0.165 1.165 6 H -0.204 1.204 7 C -0.601 4.601 8 H 0.120 0.880 9 C 0.347 3.653 10 O -0.520 6.520 11 N -0.383 5.383 12 C -0.021 4.021 13 C -0.026 4.026 14 N -0.340 5.340 15 C 0.329 3.671 16 O -0.457 6.457 17 C -0.250 4.250 18 C -0.040 4.040 19 C -0.165 4.165 20 C -0.201 4.201 21 C -0.203 4.203 22 C -0.011 4.011 23 C -0.014 4.014 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.124 0.876 27 H 0.088 0.912 28 H 0.152 0.848 29 H 0.181 0.819 30 H 0.183 0.817 31 H 0.114 0.886 32 H 0.135 0.865 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.023 -13.333 2.242 21.739 hybrid contribution -0.780 0.795 -0.100 1.118 sum 16.242 -12.539 2.142 20.631 Atomic orbital electron populations 1.70208 1.09746 1.28916 1.36619 1.27046 0.95460 1.05139 0.91167 0.85016 0.78956 0.74933 0.79412 1.18631 1.16508 1.20425 1.21509 0.95027 0.89308 1.54231 0.88038 1.18767 0.86600 0.84116 0.75863 1.90549 1.16836 1.87263 1.57384 1.48055 1.06700 1.05139 1.78386 1.22169 0.80111 1.01594 0.98225 1.22494 0.98410 0.82560 0.99106 1.48075 1.06300 1.07443 1.72151 1.19322 0.89754 0.82168 0.75900 1.90721 1.71144 1.32790 1.51040 1.22806 0.91337 1.01067 1.09805 1.23452 1.00576 0.91353 0.88589 1.21432 1.00712 0.90181 1.04174 1.23186 0.99589 0.97300 0.99994 1.22832 1.02564 1.02439 0.92490 1.21718 0.80833 1.00234 0.98310 1.21486 0.97498 0.84978 0.97439 0.91698 0.91992 0.87637 0.91241 0.84774 0.81898 0.81713 0.88551 0.86497 0.88410 0.89913 0.88176 0.92287 0.88813 0.91712 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -50.04 11.84 21.84 0.26 -49.78 16 2 C 0.03 1.45 5.50 85.30 0.47 1.92 16 3 Si 1.00 39.20 29.56 68.60 2.03 41.23 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.24 -8.57 7.11 99.48 0.71 -7.87 16 6 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 7 C -0.56 -30.47 8.86 24.83 0.22 -30.25 16 8 H 0.10 4.70 5.67 -2.91 -0.02 4.68 16 9 C 0.54 30.85 7.61 86.36 0.66 31.51 16 10 O -0.63 -42.47 14.45 -4.32 -0.06 -42.53 16 11 N -0.65 -29.01 2.94 -822.22 -2.42 -31.43 16 12 C 0.10 3.38 6.51 86.56 0.56 3.95 16 13 C 0.10 2.49 6.50 86.56 0.56 3.05 16 14 N -0.61 -18.23 2.95 -821.45 -2.42 -20.65 16 15 C 0.54 15.36 7.53 86.57 0.65 16.01 16 16 O -0.57 -19.92 12.81 -4.07 -0.05 -19.97 16 17 C -0.23 -4.43 9.34 23.43 0.22 -4.21 16 18 C -0.02 -0.34 9.74 24.52 0.24 -0.10 16 19 C -0.15 -3.05 4.26 -11.54 -0.05 -3.10 16 20 C -0.16 -2.42 10.24 30.62 0.31 -2.10 16 21 C -0.17 -3.18 10.24 30.62 0.31 -2.87 16 22 C 0.11 3.97 6.60 86.42 0.57 4.54 16 23 C 0.11 4.58 6.60 86.41 0.57 5.15 16 24 H 0.27 15.06 8.29 -92.71 -0.77 14.29 16 25 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.11 3.46 5.34 -2.39 -0.01 3.45 16 27 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.13 2.17 5.35 -2.39 -0.01 2.16 16 29 H 0.16 2.03 5.89 -2.91 -0.02 2.02 16 30 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 31 H 0.10 2.66 6.39 -2.39 -0.02 2.64 16 32 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.09 3.23 6.99 -2.39 -0.02 3.22 16 38 H 0.06 3.05 6.99 -2.39 -0.02 3.04 16 39 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -79.73 319.50 3.70 -76.03 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 1.07 Total: 23.62 kcal Atomic # 6 Polarization: 18.20 SS G_CDS: 5.30 Total: 23.50 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -4.58 Total: -101.87 kcal Atomic # 8 Polarization: -62.39 SS G_CDS: -0.11 Total: -62.50 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -79.73 3.70 -76.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492956684.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.032 kcal (2) G-P(sol) polarization free energy of solvation -79.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds