Wall clock time and date at job start Tue Mar 31 2020 00:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 119.99594 * 2 1 4 4 H 1.48500 * 109.47309 * 270.00057 * 3 2 1 5 5 H 1.48496 * 109.47518 * 30.00183 * 3 2 1 6 6 H 1.48503 * 109.47255 * 150.00153 * 3 2 1 7 7 C 1.38941 * 120.00397 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00221 * 359.97438 * 7 2 1 9 9 N 1.37102 * 120.00393 * 179.97438 * 7 2 1 10 10 C 1.34776 * 120.00095 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00209 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99767 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46943 * 180.02562 * 12 10 9 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 10 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.47408 * 60.00073 * 15 14 13 17 17 O 1.42906 * 109.47257 * 300.00098 * 15 14 13 18 18 C 1.53004 * 109.47360 * 180.02562 * 15 14 13 19 19 C 1.50699 * 109.47415 * 184.99824 * 18 15 14 20 20 C 1.38229 * 119.99975 * 269.72742 * 19 18 15 21 21 C 1.38240 * 119.99845 * 179.76936 * 20 19 18 22 22 C 1.38229 * 119.99844 * 0.50138 * 21 20 19 23 23 C 1.38231 * 120.00108 * 359.74987 * 22 21 20 24 24 C 1.38229 * 119.99848 * 89.99817 * 19 18 15 25 25 H 0.97001 * 120.00755 * 359.97438 * 1 2 3 26 26 H 0.96997 * 119.99192 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.46763 * 60.00720 * 12 10 9 28 28 H 1.08995 * 109.47483 * 300.00377 * 12 10 9 29 29 H 1.00901 * 111.00067 * 303.95401 * 13 12 10 30 30 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 31 31 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 32 32 H 0.96709 * 113.99630 * 299.99873 * 17 15 14 33 33 H 1.09001 * 109.46559 * 305.00226 * 18 15 14 34 34 H 1.08997 * 109.47028 * 64.99590 * 18 15 14 35 35 H 1.08008 * 120.00227 * 359.97438 * 20 19 18 36 36 H 1.08004 * 119.99815 * 180.23376 * 21 20 19 37 37 H 1.08006 * 119.99992 * 179.73192 * 22 21 20 38 38 H 1.08005 * 120.00281 * 179.97438 * 23 22 21 39 39 H 1.08003 * 120.00600 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4954 2.0465 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4474 -3.4209 -0.0011 12 6 5.5608 -2.3703 -0.0022 13 7 6.0505 -3.7553 -0.0026 14 6 7.5190 -3.7944 -0.0031 15 6 7.9904 -5.2499 -0.0042 16 1 7.6132 -5.7534 -0.8943 17 8 7.4966 -5.9114 1.1624 18 6 9.5199 -5.2908 -0.0041 19 6 9.9843 -6.7189 -0.1289 20 6 10.1999 -7.4773 1.0065 21 6 10.6213 -8.7889 0.8919 22 6 10.8372 -9.3388 -0.3578 23 6 10.6266 -8.5787 -1.4931 24 6 10.2002 -7.2688 -1.3786 25 1 -0.4851 0.8400 0.0004 26 1 3.8648 -0.3631 -0.0007 27 1 5.9247 -1.8561 0.8873 28 1 5.9234 -1.8568 -0.8926 29 1 5.6756 -4.2716 0.7790 30 1 7.8955 -3.2902 -0.8932 31 1 7.8962 -3.2906 0.8868 32 1 7.7929 -5.5161 1.9938 33 1 9.8988 -4.7105 -0.8454 34 1 9.8945 -4.8669 0.9276 35 1 10.0358 -7.0462 1.9832 36 1 10.7861 -9.3826 1.7789 37 1 11.1707 -10.3621 -0.4473 38 1 10.7957 -9.0082 -2.4695 39 1 10.0364 -6.6748 -2.2656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567707131.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:07 Heat of formation + Delta-G solvation = -63.040807 kcal Electronic energy + Delta-G solvation = -20366.192388 eV Core-core repulsion = 17080.414480 eV Total energy + Delta-G solvation = -3285.777907 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.70727 -38.55180 -37.73398 -34.83382 -33.81693 -33.08176 -31.64903 -31.07718 -29.82435 -27.32492 -25.08202 -23.34924 -22.77241 -21.83558 -21.20466 -19.37341 -18.36083 -17.21955 -16.56511 -16.39397 -15.69413 -15.48413 -15.25641 -15.02250 -14.67125 -14.58186 -13.79518 -13.60125 -13.57305 -13.22150 -12.98840 -12.72674 -12.61790 -12.21717 -11.98639 -11.84726 -11.68586 -11.37147 -11.17722 -11.16190 -11.00213 -10.59213 -10.23796 -9.96025 -9.56055 -9.10214 -8.85386 -8.55624 -8.18058 -8.12217 -6.29631 -3.81066 1.15817 1.22034 3.02580 3.07296 3.15243 3.55339 3.75685 3.99049 4.11124 4.33142 4.50372 4.63623 4.78014 4.81297 4.90602 4.98963 5.01159 5.13096 5.17650 5.24460 5.31517 5.42656 5.47669 5.56397 5.62781 5.80041 5.82796 5.84473 5.93607 6.01696 6.26463 6.31894 6.42667 6.81286 7.08697 7.52932 7.59699 7.65128 8.16268 8.61488 8.96658 9.43894 9.84657 10.83575 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048345 B = 0.002556 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.029118 B =10952.801450 C =11118.387962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.040 3.960 3 Si 0.881 3.119 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.592 5.592 10 C 0.450 3.550 11 O -0.562 6.562 12 C 0.048 3.952 13 N -0.664 5.664 14 C 0.028 3.972 15 C 0.115 3.885 16 H 0.109 0.891 17 O -0.550 6.550 18 C -0.114 4.114 19 C -0.073 4.073 20 C -0.105 4.105 21 C -0.121 4.121 22 C -0.127 4.127 23 C -0.120 4.120 24 C -0.118 4.118 25 H 0.273 0.727 26 H 0.370 0.630 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.358 0.642 30 H 0.079 0.921 31 H 0.028 0.972 32 H 0.367 0.633 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.604 -9.537 0.964 27.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.235 3.765 11 O -0.443 6.443 12 C -0.085 4.085 13 N -0.298 5.298 14 C -0.102 4.102 15 C 0.056 3.944 16 H 0.127 0.873 17 O -0.354 6.354 18 C -0.152 4.152 19 C -0.073 4.073 20 C -0.123 4.123 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.138 4.138 24 C -0.136 4.136 25 H 0.084 0.916 26 H 0.203 0.797 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.178 0.822 30 H 0.097 0.903 31 H 0.046 0.954 32 H 0.213 0.787 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 24.625 -10.582 -0.165 26.803 hybrid contribution 1.062 2.128 1.243 2.683 sum 25.687 -8.454 1.078 27.064 Atomic orbital electron populations 1.69620 1.05628 1.27465 1.49479 1.25040 0.95505 0.97971 0.97727 0.86659 0.79709 0.84044 0.78876 1.19611 1.20207 1.19578 1.19440 0.79251 0.96650 1.47973 0.86277 1.42208 1.07535 1.06130 1.67275 1.19712 0.88206 0.84571 0.83977 1.90580 1.69404 1.30917 1.53436 1.21720 0.95121 0.90551 1.01124 1.59983 1.05310 1.12380 1.52139 1.22686 0.89755 0.96807 1.00998 1.21978 0.90405 0.92069 0.89970 0.87341 1.86708 1.75189 1.58062 1.15441 1.21343 0.96807 0.93424 1.03590 1.19706 0.98494 0.95780 0.93308 1.20991 0.98996 0.94236 0.98076 1.21136 0.99776 0.95440 0.97503 1.21129 1.00855 0.99766 0.92769 1.21125 0.99777 0.94368 0.98547 1.21067 0.99930 0.95641 0.96999 0.91630 0.79726 0.93924 0.89571 0.82163 0.90257 0.95366 0.78676 0.89823 0.90666 0.86304 0.86261 0.86354 0.86206 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.00 13.96 55.49 0.77 -25.22 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 19.47 27.74 -169.99 -4.71 14.75 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 7 C -0.30 -8.73 10.16 -14.93 -0.15 -8.89 16 8 H 0.12 3.91 7.39 -52.48 -0.39 3.52 16 9 N -0.59 -14.30 5.09 -10.96 -0.06 -14.36 16 10 C 0.45 10.43 7.82 -10.99 -0.09 10.34 16 11 O -0.56 -15.54 15.78 5.55 0.09 -15.46 16 12 C 0.05 0.80 6.17 -4.98 -0.03 0.77 16 13 N -0.66 -10.51 6.13 -115.06 -0.70 -11.21 16 14 C 0.03 0.30 5.39 -3.82 -0.02 0.28 16 15 C 0.12 1.18 3.23 -26.73 -0.09 1.10 16 16 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 17 O -0.55 -6.21 12.18 -35.23 -0.43 -6.64 16 18 C -0.11 -0.89 5.03 -27.88 -0.14 -1.03 16 19 C -0.07 -0.68 4.96 -104.63 -0.52 -1.20 16 20 C -0.10 -0.96 9.41 -39.58 -0.37 -1.33 16 21 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 22 C -0.13 -1.09 10.05 -39.59 -0.40 -1.49 16 23 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 24 C -0.12 -1.09 9.70 -39.59 -0.38 -1.48 16 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.37 7.80 5.76 -40.82 -0.24 7.57 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.36 6.10 7.82 -39.29 -0.31 5.80 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.37 2.80 9.05 45.56 0.41 3.21 16 33 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 35 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 36 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 37 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 39 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -34.60 334.61 -7.83 -42.43 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -4.75 Total: 15.48 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -3.08 Total: -4.82 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.01 Total: -50.79 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.34 Total: -22.10 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.75 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.60 -7.83 -42.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567707131.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.609 kcal (2) G-P(sol) polarization free energy of solvation -34.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds