Wall clock time and date at job start Tue Mar 31 2020 00:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 119.99594 * 2 1 4 4 H 1.48500 * 109.47309 * 270.00057 * 3 2 1 5 5 H 1.48496 * 109.47518 * 30.00183 * 3 2 1 6 6 H 1.48503 * 109.47255 * 150.00153 * 3 2 1 7 7 C 1.38941 * 120.00397 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00221 * 359.97438 * 7 2 1 9 9 N 1.37102 * 120.00393 * 179.97438 * 7 2 1 10 10 C 1.34776 * 120.00095 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00209 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99767 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46943 * 180.02562 * 12 10 9 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 10 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.47408 * 60.00073 * 15 14 13 17 17 O 1.42906 * 109.47257 * 300.00098 * 15 14 13 18 18 C 1.53004 * 109.47360 * 180.02562 * 15 14 13 19 19 C 1.50699 * 109.47415 * 184.99824 * 18 15 14 20 20 C 1.38229 * 119.99975 * 269.72742 * 19 18 15 21 21 C 1.38240 * 119.99845 * 179.76936 * 20 19 18 22 22 C 1.38229 * 119.99844 * 0.50138 * 21 20 19 23 23 C 1.38231 * 120.00108 * 359.74987 * 22 21 20 24 24 C 1.38229 * 119.99848 * 89.99817 * 19 18 15 25 25 H 0.97001 * 120.00755 * 359.97438 * 1 2 3 26 26 H 0.96997 * 119.99192 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.46763 * 60.00720 * 12 10 9 28 28 H 1.08995 * 109.47483 * 300.00377 * 12 10 9 29 29 H 1.00901 * 111.00067 * 303.95401 * 13 12 10 30 30 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 31 31 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 32 32 H 0.96709 * 113.99630 * 299.99873 * 17 15 14 33 33 H 1.09001 * 109.46559 * 305.00226 * 18 15 14 34 34 H 1.08997 * 109.47028 * 64.99590 * 18 15 14 35 35 H 1.08008 * 120.00227 * 359.97438 * 20 19 18 36 36 H 1.08004 * 119.99815 * 180.23376 * 21 20 19 37 37 H 1.08006 * 119.99992 * 179.73192 * 22 21 20 38 38 H 1.08005 * 120.00281 * 179.97438 * 23 22 21 39 39 H 1.08003 * 120.00600 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4954 2.0465 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4474 -3.4209 -0.0011 12 6 5.5608 -2.3703 -0.0022 13 7 6.0505 -3.7553 -0.0026 14 6 7.5190 -3.7944 -0.0031 15 6 7.9904 -5.2499 -0.0042 16 1 7.6132 -5.7534 -0.8943 17 8 7.4966 -5.9114 1.1624 18 6 9.5199 -5.2908 -0.0041 19 6 9.9843 -6.7189 -0.1289 20 6 10.1999 -7.4773 1.0065 21 6 10.6213 -8.7889 0.8919 22 6 10.8372 -9.3388 -0.3578 23 6 10.6266 -8.5787 -1.4931 24 6 10.2002 -7.2688 -1.3786 25 1 -0.4851 0.8400 0.0004 26 1 3.8648 -0.3631 -0.0007 27 1 5.9247 -1.8561 0.8873 28 1 5.9234 -1.8568 -0.8926 29 1 5.6756 -4.2716 0.7790 30 1 7.8955 -3.2902 -0.8932 31 1 7.8962 -3.2906 0.8868 32 1 7.7929 -5.5161 1.9938 33 1 9.8988 -4.7105 -0.8454 34 1 9.8945 -4.8669 0.9276 35 1 10.0358 -7.0462 1.9832 36 1 10.7861 -9.3826 1.7789 37 1 11.1707 -10.3621 -0.4473 38 1 10.7957 -9.0082 -2.4695 39 1 10.0364 -6.6748 -2.2656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567707131.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:07 Heat of formation + Delta-G solvation = -91.062879 kcal Electronic energy + Delta-G solvation = -20367.407516 eV Core-core repulsion = 17080.414480 eV Total energy + Delta-G solvation = -3286.993035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.46560 -40.19683 -38.66579 -36.26255 -35.59628 -33.78399 -33.73412 -31.70531 -30.77082 -28.57489 -26.53481 -24.71001 -23.41102 -22.67474 -21.88029 -21.28984 -20.28259 -18.20082 -17.56493 -17.30696 -17.11647 -16.71711 -16.35990 -15.94192 -15.88371 -15.58642 -15.12769 -14.96625 -14.63451 -14.46142 -14.20583 -14.02480 -13.67875 -13.34497 -13.19595 -13.02096 -12.78493 -12.55992 -12.41533 -12.04952 -11.97744 -11.77853 -11.76174 -11.51999 -11.04053 -10.42988 -10.25625 -9.75319 -9.50039 -9.29038 -8.41546 -6.03019 0.50667 0.56911 1.30032 1.36292 1.45145 1.95108 2.23286 2.68758 2.94571 3.14411 3.36538 3.63383 3.82406 4.02220 4.11979 4.17509 4.22718 4.25223 4.33743 4.42039 4.44420 4.52706 4.55878 4.70169 4.77546 4.81426 4.92937 5.16608 5.23946 5.27432 5.52299 5.62885 5.68074 5.77703 5.90285 6.06421 6.19753 6.40028 6.59577 6.87600 6.92685 7.39074 7.96444 8.76268 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048345 B = 0.002556 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.029118 B =10952.801450 C =11118.387962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.230 1.230 7 C -0.331 4.331 8 H 0.053 0.947 9 N -0.590 5.590 10 C 0.446 3.554 11 O -0.617 6.617 12 C 0.063 3.937 13 N -0.689 5.689 14 C 0.031 3.969 15 C 0.121 3.879 16 H 0.081 0.919 17 O -0.572 6.572 18 C -0.102 4.102 19 C -0.087 4.087 20 C -0.119 4.119 21 C -0.134 4.134 22 C -0.138 4.138 23 C -0.133 4.133 24 C -0.135 4.135 25 H 0.279 0.721 26 H 0.391 0.609 27 H 0.078 0.922 28 H 0.116 0.884 29 H 0.346 0.654 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.382 0.618 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.123 -7.371 1.258 30.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.216 4.216 3 Si 0.788 3.212 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.153 1.153 7 C -0.460 4.460 8 H 0.071 0.929 9 N -0.232 5.232 10 C 0.234 3.766 11 O -0.501 6.501 12 C -0.070 4.070 13 N -0.323 5.323 14 C -0.097 4.097 15 C 0.062 3.938 16 H 0.099 0.901 17 O -0.379 6.379 18 C -0.140 4.140 19 C -0.087 4.087 20 C -0.136 4.136 21 C -0.152 4.152 22 C -0.156 4.156 23 C -0.151 4.151 24 C -0.153 4.153 25 H 0.089 0.911 26 H 0.226 0.774 27 H 0.096 0.904 28 H 0.134 0.866 29 H 0.165 0.835 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.231 0.769 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 28.192 -8.416 0.132 29.422 hybrid contribution -0.087 1.275 1.151 1.720 sum 28.105 -7.141 1.284 29.026 Atomic orbital electron populations 1.69809 1.08211 1.29310 1.50232 1.26171 0.96527 1.02880 0.96003 0.85319 0.79474 0.76430 0.79980 1.18109 1.19992 1.15272 1.19006 0.81588 0.94901 1.50489 0.92930 1.42026 1.05777 1.07612 1.67810 1.21085 0.91212 0.83254 0.81080 1.90556 1.71499 1.32960 1.55106 1.21648 0.89293 0.91944 1.04067 1.59975 1.08425 1.11780 1.52101 1.22774 0.86597 0.97485 1.02878 1.21839 0.91885 0.91311 0.88766 0.90112 1.86670 1.75841 1.58835 1.16556 1.21254 0.94661 0.92893 1.05169 1.19950 0.98683 0.96675 0.93394 1.21260 0.99083 0.94572 0.98730 1.21445 0.99681 0.95757 0.98288 1.21433 1.00719 1.00700 0.92776 1.21420 0.99700 0.94508 0.99474 1.21338 1.00221 0.96155 0.97584 0.91110 0.77370 0.90390 0.86649 0.83471 0.88738 0.92721 0.76898 0.88468 0.88792 0.85097 0.84757 0.84683 0.84749 0.85188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.93 13.96 21.66 0.30 -56.63 16 2 C -0.02 -0.97 5.50 84.92 0.47 -0.51 16 3 Si 0.97 38.72 27.74 68.60 1.90 40.62 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 7 C -0.33 -19.68 10.16 84.04 0.85 -18.82 16 8 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 9 N -0.59 -28.14 5.09 -306.99 -1.56 -29.71 16 10 C 0.45 20.52 7.82 87.66 0.69 21.21 16 11 O -0.62 -35.46 15.78 -3.07 -0.05 -35.51 16 12 C 0.06 1.90 6.17 85.56 0.53 2.42 16 13 N -0.69 -20.50 6.13 -517.93 -3.17 -23.67 16 14 C 0.03 0.59 5.39 86.30 0.47 1.05 16 15 C 0.12 2.28 3.23 30.59 0.10 2.38 16 16 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 17 O -0.57 -12.28 12.18 -148.98 -1.81 -14.09 16 18 C -0.10 -1.34 5.03 29.85 0.15 -1.19 16 19 C -0.09 -1.50 4.96 -19.87 -0.10 -1.60 16 20 C -0.12 -2.02 9.41 22.27 0.21 -1.81 16 21 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 22 C -0.14 -2.25 10.05 22.27 0.22 -2.03 16 23 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 24 C -0.14 -2.38 9.70 22.27 0.22 -2.16 16 25 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 26 H 0.39 15.18 5.76 -92.71 -0.53 14.65 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.35 11.58 7.82 -89.69 -0.70 10.88 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.38 5.12 9.05 -74.05 -0.67 4.45 16 33 H 0.10 1.02 8.09 -2.39 -0.02 1.00 16 34 H 0.09 0.90 8.08 -2.39 -0.02 0.88 16 35 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.13 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 39 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -81.44 334.61 -1.04 -82.48 By element: Atomic # 1 Polarization: 42.46 SS G_CDS: -0.89 Total: 41.58 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 4.25 Total: -5.07 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -4.43 Total: -110.01 kcal Atomic # 8 Polarization: -47.74 SS G_CDS: -1.86 Total: -49.60 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 1.90 Total: 40.62 kcal Total: -81.44 -1.04 -82.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567707131.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.583 kcal (2) G-P(sol) polarization free energy of solvation -81.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds