Wall clock time and date at job start Tue Mar 31 2020 00:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35897 * 117.00481 * 180.02562 * 11 10 9 13 13 C 1.38821 * 120.01275 * 359.72205 * 12 11 10 14 14 C 1.38173 * 120.08789 * 179.72138 * 13 12 11 15 15 C 1.38157 * 120.13180 * 0.55631 * 14 13 12 16 16 C 1.38929 * 120.03217 * 359.71781 * 15 14 13 17 17 N 1.39664 * 120.04617 * 180.02562 * 16 15 14 18 18 C 1.46504 * 119.99630 * 359.97438 * 17 16 15 19 19 C 1.53009 * 109.46866 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.47072 * 180.02562 * 19 18 17 21 21 N 1.34776 * 120.00112 * 179.97438 * 20 19 18 22 22 O 1.21287 * 120.00110 * 359.97438 * 20 19 18 23 23 C 1.38564 * 120.02346 * 180.02562 * 12 11 10 24 24 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 27 27 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 29 29 H 1.08000 * 119.95252 * 0.02562 * 13 12 11 30 30 H 1.08007 * 119.93164 * 180.27734 * 14 13 12 31 31 H 1.07999 * 119.98069 * 179.74516 * 15 14 13 32 32 H 0.97000 * 120.00446 * 179.97438 * 17 16 15 33 33 H 1.08998 * 109.47492 * 299.99129 * 18 17 16 34 34 H 1.08996 * 109.47630 * 60.00022 * 18 17 16 35 35 H 1.08994 * 109.47186 * 300.00005 * 19 18 17 36 36 H 1.08995 * 109.47269 * 60.00034 * 19 18 17 37 37 H 0.97001 * 119.99579 * 0.02562 * 21 20 19 38 38 H 0.96998 * 119.99904 * 179.97438 * 21 20 19 39 39 H 1.07998 * 120.06257 * 359.97421 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2706 -6.0395 0.0004 13 6 3.6570 -5.9673 -0.0044 14 6 4.4109 -7.1252 0.0019 15 6 3.7880 -8.3583 0.0013 16 6 2.4010 -8.4367 0.0004 17 7 1.7710 -9.6832 0.0004 18 6 2.5730 -10.9092 0.0009 19 6 1.6450 -12.1257 0.0014 20 6 2.4699 -13.3869 0.0025 21 7 1.8621 -14.5898 0.0037 22 8 3.6809 -13.3194 0.0023 23 6 1.6419 -7.2743 -0.0007 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8902 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 4.1468 -5.0047 -0.0081 30 1 5.4894 -7.0660 0.0026 31 1 4.3798 -9.2618 0.0021 32 1 0.8025 -9.7372 0.0002 33 1 3.2021 -10.9323 -0.8890 34 1 3.2017 -10.9319 0.8910 35 1 1.0162 -12.1026 0.8914 36 1 1.0160 -12.1033 -0.8884 37 1 0.8936 -14.6437 0.0035 38 1 2.3931 -15.4015 0.0040 39 1 0.5635 -7.3323 -0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578232690.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:24 Heat of formation + Delta-G solvation = -67.290113 kcal Electronic energy + Delta-G solvation = -19963.914728 eV Core-core repulsion = 16677.952557 eV Total energy + Delta-G solvation = -3285.962171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.08303 -39.61876 -37.74586 -35.38749 -34.18553 -33.31927 -31.75674 -30.70360 -29.18506 -28.05035 -25.12774 -24.20288 -22.55014 -21.50607 -20.75595 -20.29677 -18.22306 -17.64263 -17.18306 -16.31446 -16.25332 -15.98805 -15.44420 -15.23415 -15.21679 -14.64725 -14.32949 -14.32054 -13.64237 -13.32294 -12.88229 -12.63700 -12.33821 -12.22908 -12.13280 -11.49369 -11.38405 -11.13173 -10.87699 -10.72028 -10.51297 -10.39747 -10.22828 -9.96093 -9.67783 -9.60707 -9.25758 -8.41925 -7.90435 -7.30581 -6.07262 -4.11452 1.76292 1.91911 2.13203 2.79684 3.29860 3.35575 3.38607 3.45972 4.04365 4.17133 4.24407 4.45649 4.56236 4.57556 4.96413 5.14500 5.29144 5.43290 5.50518 5.54520 5.59518 5.65506 5.83168 6.12294 6.13682 6.16077 6.23905 6.44800 6.66359 6.71429 6.76375 6.80122 6.93496 7.38582 7.55404 7.67223 7.68862 7.74256 7.87199 8.15759 8.28552 8.94258 9.52587 11.04353 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.059698 B = 0.002292 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.912662 B =12211.568879 C =12649.430470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.066 3.934 11 O -0.317 6.317 12 C 0.186 3.814 13 C -0.263 4.263 14 C -0.037 4.037 15 C -0.242 4.242 16 C 0.245 3.755 17 N -0.752 5.752 18 C 0.143 3.857 19 C -0.155 4.155 20 C 0.522 3.478 21 N -0.857 5.857 22 O -0.539 6.539 23 C -0.237 4.237 24 H 0.263 0.737 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.126 0.874 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.397 0.603 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.402 0.598 38 H 0.403 0.597 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.888 -27.538 0.007 27.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.008 4.008 11 O -0.229 6.229 12 C 0.138 3.862 13 C -0.283 4.283 14 C -0.056 4.056 15 C -0.265 4.265 16 C 0.143 3.857 17 N -0.384 5.384 18 C 0.018 3.982 19 C -0.196 4.196 20 C 0.306 3.694 21 N -0.421 5.421 22 O -0.415 6.415 23 C -0.260 4.260 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.144 0.856 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.232 0.768 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.231 0.769 38 H 0.233 0.767 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.437 -27.274 0.012 27.383 hybrid contribution -0.090 0.534 -0.010 0.542 sum 2.348 -26.740 0.002 26.843 Atomic orbital electron populations 1.69982 1.06092 1.26900 1.49865 1.24996 0.94914 0.99379 0.94977 0.86483 0.79745 0.82936 0.78192 1.20524 1.21086 1.19757 1.20986 0.93083 0.90234 1.52014 0.92336 1.19127 0.94216 0.89093 0.98812 1.23310 0.96980 0.80724 0.99772 1.86139 1.36753 1.13294 1.86751 1.18811 0.89866 0.86807 0.90713 1.21163 0.93012 0.99624 1.14519 1.20636 0.99067 0.91433 0.94458 1.20453 0.92302 0.98059 1.15645 1.17303 0.91510 0.84343 0.92530 1.44462 1.07936 1.02198 1.83774 1.20934 0.92910 0.81580 1.02808 1.21795 0.99694 0.92712 1.05360 1.20435 0.88472 0.85447 0.75006 1.43877 1.11597 1.08293 1.78314 1.90798 1.14446 1.87389 1.48876 1.19646 0.99572 0.88870 1.17931 0.92760 0.95448 0.95426 0.93081 0.93093 0.85570 0.86302 0.86464 0.76818 0.91423 0.91428 0.87996 0.87991 0.76929 0.76670 0.85769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.66 5.34 -27.89 -0.15 0.51 16 10 C 0.07 1.47 4.68 37.16 0.17 1.64 16 11 O -0.32 -6.76 10.13 -19.42 -0.20 -6.96 16 12 C 0.19 3.42 6.68 -39.25 -0.26 3.16 16 13 C -0.26 -4.42 9.04 -39.39 -0.36 -4.77 16 14 C -0.04 -0.54 10.03 -39.64 -0.40 -0.93 16 15 C -0.24 -3.34 9.31 -39.36 -0.37 -3.70 16 16 C 0.25 3.36 6.65 -83.81 -0.56 2.80 16 17 N -0.75 -7.46 5.73 -58.65 -0.34 -7.79 16 18 C 0.14 1.23 4.20 -4.04 -0.02 1.22 16 19 C -0.16 -0.78 5.81 -27.88 -0.16 -0.94 16 20 C 0.52 3.62 8.10 -10.99 -0.09 3.53 16 21 N -0.86 -2.68 8.87 31.22 0.28 -2.40 16 22 O -0.54 -6.34 16.82 5.55 0.09 -6.24 16 23 C -0.24 -3.76 9.83 -39.24 -0.39 -4.15 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 1.08 7.67 -51.93 -0.40 0.68 16 28 H 0.05 1.08 7.65 -51.93 -0.40 0.68 16 29 H 0.13 2.10 6.29 -52.49 -0.33 1.76 16 30 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 31 H 0.12 1.43 6.73 -52.49 -0.35 1.08 16 32 H 0.40 3.12 8.48 -40.82 -0.35 2.77 16 33 H 0.07 0.67 7.91 -51.93 -0.41 0.26 16 34 H 0.07 0.67 7.90 -51.93 -0.41 0.26 16 35 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.40 0.03 8.83 -40.82 -0.36 -0.33 16 38 H 0.40 1.07 8.93 -40.82 -0.36 0.71 16 39 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 335.07 15.07 5.05 5.05 Total: -1.00 -34.66 335.07 -7.83 -42.49 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.45 Total: 0.55 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -2.98 Total: -15.20 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.68 Total: -36.17 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.10 Total: -13.20 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.66 -7.83 -42.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578232690.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.804 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds