Wall clock time and date at job start Tue Mar 31 2020 00:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35897 * 117.00481 * 180.02562 * 11 10 9 13 13 C 1.38821 * 120.01275 * 359.72205 * 12 11 10 14 14 C 1.38173 * 120.08789 * 179.72138 * 13 12 11 15 15 C 1.38157 * 120.13180 * 0.55631 * 14 13 12 16 16 C 1.38929 * 120.03217 * 359.71781 * 15 14 13 17 17 N 1.39664 * 120.04617 * 180.02562 * 16 15 14 18 18 C 1.46504 * 119.99630 * 359.97438 * 17 16 15 19 19 C 1.53009 * 109.46866 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.47072 * 180.02562 * 19 18 17 21 21 N 1.34776 * 120.00112 * 179.97438 * 20 19 18 22 22 O 1.21287 * 120.00110 * 359.97438 * 20 19 18 23 23 C 1.38564 * 120.02346 * 180.02562 * 12 11 10 24 24 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 27 27 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 29 29 H 1.08000 * 119.95252 * 0.02562 * 13 12 11 30 30 H 1.08007 * 119.93164 * 180.27734 * 14 13 12 31 31 H 1.07999 * 119.98069 * 179.74516 * 15 14 13 32 32 H 0.97000 * 120.00446 * 179.97438 * 17 16 15 33 33 H 1.08998 * 109.47492 * 299.99129 * 18 17 16 34 34 H 1.08996 * 109.47630 * 60.00022 * 18 17 16 35 35 H 1.08994 * 109.47186 * 300.00005 * 19 18 17 36 36 H 1.08995 * 109.47269 * 60.00034 * 19 18 17 37 37 H 0.97001 * 119.99579 * 0.02562 * 21 20 19 38 38 H 0.96998 * 119.99904 * 179.97438 * 21 20 19 39 39 H 1.07998 * 120.06257 * 359.97421 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2706 -6.0395 0.0004 13 6 3.6570 -5.9673 -0.0044 14 6 4.4109 -7.1252 0.0019 15 6 3.7880 -8.3583 0.0013 16 6 2.4010 -8.4367 0.0004 17 7 1.7710 -9.6832 0.0004 18 6 2.5730 -10.9092 0.0009 19 6 1.6450 -12.1257 0.0014 20 6 2.4699 -13.3869 0.0025 21 7 1.8621 -14.5898 0.0037 22 8 3.6809 -13.3194 0.0023 23 6 1.6419 -7.2743 -0.0007 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8902 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 4.1468 -5.0047 -0.0081 30 1 5.4894 -7.0660 0.0026 31 1 4.3798 -9.2618 0.0021 32 1 0.8025 -9.7372 0.0002 33 1 3.2021 -10.9323 -0.8890 34 1 3.2017 -10.9319 0.8910 35 1 1.0162 -12.1026 0.8914 36 1 1.0160 -12.1033 -0.8884 37 1 0.8936 -14.6437 0.0035 38 1 2.3931 -15.4015 0.0040 39 1 0.5635 -7.3323 -0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578232690.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:23 Heat of formation + Delta-G solvation = -93.483904 kcal Electronic energy + Delta-G solvation = -19965.050576 eV Core-core repulsion = 16677.952557 eV Total energy + Delta-G solvation = -3287.098019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.05402 -40.53045 -39.02279 -36.42180 -35.40545 -34.65530 -32.65682 -32.42818 -30.61434 -29.07491 -26.99677 -25.12610 -23.89149 -22.97987 -21.74167 -21.33004 -19.41042 -18.46255 -18.06813 -17.78028 -17.12463 -16.91659 -16.77212 -16.68846 -16.48145 -16.41098 -15.39473 -15.08278 -14.51477 -14.42286 -14.31509 -14.25260 -13.97492 -13.32420 -13.18939 -12.94469 -12.76739 -12.52037 -12.38597 -12.37934 -11.94682 -11.62263 -11.53954 -11.36626 -11.11079 -10.86834 -10.63041 -10.60622 -9.21304 -8.36338 -8.25463 -6.38855 0.57097 0.68880 1.41756 1.44121 1.55334 1.63686 2.06426 2.35872 2.60046 2.96244 2.97624 3.08767 3.71062 3.99447 4.12789 4.16662 4.28166 4.30341 4.30759 4.35914 4.53406 4.58184 4.69187 4.76402 4.84108 4.89894 5.06946 5.29585 5.34564 5.49155 5.52487 5.62963 5.67523 5.76380 5.90689 6.08725 6.34895 6.47050 6.62741 6.75782 6.85419 7.30951 7.35767 8.87657 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.059698 B = 0.002292 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.912662 B =12211.568879 C =12649.430470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.977 3.023 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.070 0.930 9 C 0.028 3.972 10 C 0.086 3.914 11 O -0.340 6.340 12 C 0.152 3.848 13 C -0.280 4.280 14 C -0.034 4.034 15 C -0.241 4.241 16 C 0.252 3.748 17 N -0.737 5.737 18 C 0.141 3.859 19 C -0.144 4.144 20 C 0.518 3.482 21 N -0.837 5.837 22 O -0.596 6.596 23 C -0.247 4.247 24 H 0.267 0.733 25 H -0.001 1.001 26 H -0.001 1.001 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.122 0.878 30 H 0.146 0.854 31 H 0.136 0.864 32 H 0.410 0.590 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.420 0.580 38 H 0.407 0.593 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.611 -29.044 0.005 29.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.088 0.912 9 C -0.009 4.009 10 C 0.011 3.989 11 O -0.254 6.254 12 C 0.105 3.895 13 C -0.301 4.301 14 C -0.052 4.052 15 C -0.264 4.264 16 C 0.147 3.853 17 N -0.368 5.368 18 C 0.016 3.984 19 C -0.184 4.184 20 C 0.304 3.696 21 N -0.401 5.401 22 O -0.477 6.477 23 C -0.270 4.270 24 H 0.075 0.925 25 H 0.017 0.983 26 H 0.018 0.982 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.140 0.860 30 H 0.164 0.836 31 H 0.153 0.847 32 H 0.246 0.754 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.251 0.749 38 H 0.238 0.762 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.101 -28.865 0.010 29.031 hybrid contribution -0.370 0.755 -0.010 0.841 sum 2.732 -28.110 0.000 28.243 Atomic orbital electron populations 1.70124 1.07999 1.28192 1.50649 1.26048 0.95862 1.03676 0.94185 0.85275 0.78552 0.77520 0.78648 1.19551 1.20586 1.18401 1.21401 0.93825 0.91056 1.52083 0.91195 1.18971 0.94550 0.91350 0.96035 1.22847 0.95354 0.80195 1.00477 1.86051 1.37561 1.13797 1.87981 1.19148 0.90728 0.86323 0.93254 1.21225 0.92535 1.00474 1.15817 1.20937 1.00395 0.90752 0.93146 1.20751 0.92584 0.98570 1.14452 1.17371 0.91638 0.85083 0.91214 1.44497 1.08772 1.01357 1.82136 1.20960 0.93491 0.82252 1.01669 1.21730 0.98911 0.89995 1.07779 1.20745 0.87846 0.86782 0.74273 1.43739 1.12701 1.07415 1.76237 1.90781 1.16808 1.88201 1.51879 1.19775 1.00134 0.88764 1.18318 0.92450 0.98271 0.98247 0.92305 0.92296 0.85971 0.83590 0.84655 0.75361 0.92609 0.92614 0.85509 0.85500 0.74856 0.76204 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 2 C 0.00 0.04 5.46 84.65 0.46 0.51 16 3 Si 0.98 44.07 29.54 68.60 2.03 46.10 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.55 -31.40 9.11 25.60 0.23 -31.17 16 8 H 0.07 3.77 7.74 -2.91 -0.02 3.74 16 9 C 0.03 1.58 5.34 29.85 0.16 1.73 16 10 C 0.09 3.92 4.68 71.98 0.34 4.25 16 11 O -0.34 -15.08 10.13 -92.39 -0.94 -16.02 16 12 C 0.15 5.68 6.68 22.49 0.15 5.83 16 13 C -0.28 -9.38 9.04 22.39 0.20 -9.17 16 14 C -0.03 -0.92 10.03 22.23 0.22 -0.70 16 15 C -0.24 -6.21 9.31 22.42 0.21 -6.00 16 16 C 0.25 6.51 6.65 38.20 0.25 6.77 16 17 N -0.74 -12.91 5.73 -339.46 -1.95 -14.86 16 18 C 0.14 2.14 4.20 86.38 0.36 2.50 16 19 C -0.14 -1.01 5.81 29.85 0.17 -0.84 16 20 C 0.52 6.14 8.10 87.66 0.71 6.85 16 21 N -0.84 -3.12 8.87 -173.53 -1.54 -4.66 16 22 O -0.60 -13.61 16.82 -3.05 -0.05 -13.66 16 23 C -0.25 -7.75 9.83 22.49 0.22 -7.53 16 24 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 25 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 26 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 27 H 0.06 2.55 7.67 -2.39 -0.02 2.53 16 28 H 0.06 2.55 7.65 -2.39 -0.02 2.54 16 29 H 0.12 4.08 6.29 -2.91 -0.02 4.06 16 30 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 31 H 0.14 3.00 6.73 -2.91 -0.02 2.98 16 32 H 0.41 5.29 8.48 -92.71 -0.79 4.51 16 33 H 0.06 1.02 7.91 -2.39 -0.02 1.00 16 34 H 0.06 1.01 7.90 -2.39 -0.02 1.00 16 35 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.42 -1.33 8.83 -92.71 -0.82 -2.15 16 38 H 0.41 1.34 8.93 -92.71 -0.83 0.51 16 39 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -77.68 335.07 0.19 -77.49 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -1.34 Total: 9.42 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 3.70 Total: -26.97 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -3.20 Total: -76.37 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.99 Total: -29.67 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -77.68 0.19 -77.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578232690.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.994 kcal (2) G-P(sol) polarization free energy of solvation -77.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds