Wall clock time and date at job start Mon Mar 30 2020 23:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00409 * 2 1 4 4 H 1.48502 * 109.46911 * 239.99943 * 3 2 1 5 5 H 1.48510 * 109.46779 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47294 * 119.99276 * 3 2 1 7 7 C 1.37877 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00212 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00340 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47455 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00064 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47200 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.47002 * 65.00134 * 12 11 10 14 14 N 1.28110 * 119.18520 * 270.02238 * 13 12 11 15 15 C 1.31138 * 122.93114 * 179.71776 * 14 13 12 16 16 C 1.39829 * 119.82524 * 359.48771 * 15 14 13 17 17 C 1.36910 * 118.59206 * 1.03390 * 16 15 14 18 18 C 1.34687 * 119.18821 * 90.00039 * 13 12 11 19 19 O 1.22060 * 120.49028 * 0.48218 * 18 13 12 20 20 C 1.50329 * 122.75917 * 180.58047 * 16 15 14 21 21 C 1.52833 * 110.46345 * 342.72848 * 20 16 15 22 22 C 1.53270 * 108.51061 * 50.81281 * 21 20 16 23 23 C 1.50660 * 118.13654 * 179.58610 * 15 14 13 24 24 H 0.97003 * 119.99353 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47063 * 59.99559 * 9 7 2 26 26 H 1.09000 * 109.46901 * 299.99916 * 9 7 2 27 27 H 1.09001 * 109.47079 * 60.00321 * 11 10 9 28 28 H 1.09004 * 109.47232 * 300.00098 * 11 10 9 29 29 H 1.08995 * 109.47198 * 305.00242 * 12 11 10 30 30 H 1.09004 * 109.47345 * 184.99777 * 12 11 10 31 31 H 1.08002 * 121.00196 * 179.48648 * 17 16 15 32 32 H 1.08991 * 109.45114 * 222.31250 * 20 16 15 33 33 H 1.09004 * 109.11393 * 102.91903 * 20 16 15 34 34 H 1.09007 * 109.62749 * 291.10533 * 21 20 16 35 35 H 1.08997 * 109.62887 * 170.52760 * 21 20 16 36 36 H 1.09004 * 109.60772 * 169.88724 * 22 21 20 37 37 H 1.09005 * 109.60800 * 49.38250 * 22 21 20 38 38 H 1.09000 * 109.30932 * 282.27717 * 23 15 14 39 39 H 1.09001 * 109.30576 * 41.88000 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1796 -3.5854 0.0005 11 6 1.5650 -4.8755 0.0011 12 6 2.6479 -5.9563 0.0017 13 7 3.4058 -5.8875 1.2536 14 7 4.4449 -5.1406 1.3145 15 6 5.1736 -5.0200 2.3981 16 6 4.8183 -5.7181 3.5564 17 6 3.7190 -6.5334 3.5188 18 6 2.9927 -6.6107 2.3121 19 8 2.0044 -7.3221 2.2284 20 6 5.5982 -5.6185 4.8377 21 6 6.9879 -5.0399 4.5737 22 6 6.8316 -3.7512 3.7588 23 6 6.3795 -4.1183 2.3467 24 1 -0.4849 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 0.9446 -4.9827 -0.8887 28 1 0.9451 -4.9822 0.8914 29 1 3.3215 -5.7961 -0.8401 30 1 2.1819 -6.9376 -0.0874 31 1 3.4144 -7.0969 4.3883 32 1 5.6984 -6.6098 5.2796 33 1 5.0635 -4.9699 5.5316 34 1 7.5832 -5.7591 4.0110 35 1 7.4777 -4.8168 5.5215 36 1 7.7875 -3.2293 3.7128 37 1 6.0844 -3.1105 4.2272 38 1 7.1910 -4.6309 1.8302 39 1 6.1255 -3.2075 1.8044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590127231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:03 Heat of formation + Delta-G solvation = -36.751197 kcal Electronic energy + Delta-G solvation = -21828.962011 eV Core-core repulsion = 18544.324107 eV Total energy + Delta-G solvation = -3284.637904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.94006 -38.47334 -37.16130 -36.56344 -33.69409 -32.86088 -32.47541 -29.81246 -28.94661 -27.09352 -25.47212 -23.89107 -22.80802 -22.42357 -22.07418 -20.18848 -18.21891 -17.25485 -16.61486 -16.19723 -15.82889 -15.57463 -15.01116 -14.77230 -14.43910 -14.21322 -14.07734 -13.64373 -13.40727 -13.13307 -13.04825 -12.77137 -12.38893 -12.26866 -11.76344 -11.46836 -11.41860 -11.05936 -10.99436 -10.86332 -10.83201 -10.69739 -10.53328 -10.12712 -9.72453 -9.44473 -9.14457 -8.86951 -8.21687 -8.12971 -6.11992 -4.13931 0.68350 1.79330 2.46826 3.30493 3.33266 3.36820 3.54824 4.18304 4.32803 4.38526 4.52800 4.59781 4.71678 4.77343 5.05174 5.22017 5.24260 5.30066 5.35674 5.37071 5.41021 5.45498 5.63718 5.66699 5.74922 5.81240 5.87215 5.92041 6.00249 6.06709 6.13035 6.16303 6.28538 6.37624 7.05873 7.39288 7.77059 7.83961 8.12291 8.45180 8.52058 8.98200 9.50570 10.99603 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.005424 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.311796 B = 5160.814099 C = 6489.204184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.196 3.804 10 O -0.386 6.386 11 C 0.046 3.954 12 C 0.115 3.885 13 N -0.324 5.324 14 N -0.188 5.188 15 C 0.052 3.948 16 C -0.016 4.016 17 C -0.216 4.216 18 C 0.475 3.525 19 O -0.548 6.548 20 C -0.087 4.087 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.050 4.050 24 H 0.265 0.735 25 H 0.006 0.994 26 H 0.002 0.998 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.157 0.843 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.050 -11.578 7.833 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.085 0.915 9 C 0.122 3.878 10 O -0.306 6.306 11 C -0.032 4.032 12 C -0.004 4.004 13 N -0.143 5.143 14 N -0.012 5.012 15 C -0.117 4.117 16 C -0.022 4.022 17 C -0.246 4.246 18 C 0.275 3.725 19 O -0.429 6.429 20 C -0.124 4.124 21 C -0.158 4.158 22 C -0.158 4.158 23 C -0.089 4.089 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.020 0.980 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.174 0.826 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 13.375 -11.573 6.842 18.964 hybrid contribution -0.326 0.545 0.793 1.016 sum 13.050 -11.028 7.636 18.714 Atomic orbital electron populations 1.69962 1.06128 1.27276 1.50423 1.24955 0.94969 0.99426 0.95148 0.86392 0.79318 0.81903 0.78841 1.19938 1.21146 1.20029 1.20980 0.93995 0.89194 1.50942 0.91547 1.20206 0.88749 0.83575 0.95314 1.87928 1.35044 1.12393 1.95218 1.22564 0.93924 0.86043 1.00692 1.22168 0.94366 1.00507 0.83393 1.46656 1.20264 1.33316 1.14101 1.70998 0.96030 1.06642 1.27557 1.21558 0.99178 1.02254 0.88709 1.20702 0.93798 0.91733 0.95998 1.22558 0.97935 1.05113 0.98979 1.18022 0.86941 0.82290 0.85200 1.90941 1.26997 1.41552 1.83375 1.20592 0.95675 1.02664 0.93488 1.21595 0.95846 0.97619 1.00719 1.21590 1.02095 0.97437 0.94721 1.20134 0.92313 0.98353 0.98143 0.92587 0.97623 0.97997 0.92107 0.93835 0.87536 0.87017 0.82577 0.89763 0.89234 0.91307 0.90926 0.90518 0.91026 0.90011 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -15.22 9.43 -34.44 -0.32 -15.55 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.20 5.49 5.69 36.01 0.20 5.70 16 10 O -0.39 -9.48 10.17 -35.23 -0.36 -9.84 16 11 C 0.05 0.91 6.28 37.16 0.23 1.15 16 12 C 0.12 1.89 5.96 -4.04 -0.02 1.86 16 13 N -0.32 -5.69 3.16 -63.36 -0.20 -5.89 16 14 N -0.19 -3.21 10.65 33.70 0.36 -2.85 16 15 C 0.05 0.73 6.71 -82.31 -0.55 0.18 16 16 C -0.02 -0.20 5.73 -104.69 -0.60 -0.80 16 17 C -0.22 -3.07 9.73 -39.00 -0.38 -3.45 16 18 C 0.48 8.43 7.48 -15.23 -0.11 8.32 16 19 O -0.55 -11.00 16.66 4.86 0.08 -10.91 16 20 C -0.09 -0.73 5.70 -28.15 -0.16 -0.89 16 21 C -0.12 -0.85 5.97 -26.68 -0.16 -1.01 16 22 C -0.12 -1.02 5.95 -26.72 -0.16 -1.18 16 23 C -0.05 -0.56 5.94 -28.03 -0.17 -0.72 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.11 1.60 7.37 -51.93 -0.38 1.22 16 31 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.08 0.57 8.13 -51.93 -0.42 0.14 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 328.09 15.07 4.94 4.94 Total: -1.00 -34.97 328.09 -7.60 -42.57 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -5.84 Total: -3.53 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -2.30 Total: -4.87 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.89 Total: -35.21 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.28 Total: -20.76 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.97 -7.60 -42.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590127231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.815 kcal (2) G-P(sol) polarization free energy of solvation -34.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds