Wall clock time and date at job start Mon Mar 30 2020 23:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00409 * 2 1 4 4 H 1.48502 * 109.46911 * 239.99943 * 3 2 1 5 5 H 1.48510 * 109.46779 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47294 * 119.99276 * 3 2 1 7 7 C 1.37877 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00212 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00340 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47455 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00064 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47200 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.47002 * 65.00134 * 12 11 10 14 14 N 1.28110 * 119.18520 * 270.02238 * 13 12 11 15 15 C 1.31138 * 122.93114 * 179.71776 * 14 13 12 16 16 C 1.39829 * 119.82524 * 359.48771 * 15 14 13 17 17 C 1.36910 * 118.59206 * 1.03390 * 16 15 14 18 18 C 1.34687 * 119.18821 * 90.00039 * 13 12 11 19 19 O 1.22060 * 120.49028 * 0.48218 * 18 13 12 20 20 C 1.50329 * 122.75917 * 180.58047 * 16 15 14 21 21 C 1.52833 * 110.46345 * 342.72848 * 20 16 15 22 22 C 1.53270 * 108.51061 * 50.81281 * 21 20 16 23 23 C 1.50660 * 118.13654 * 179.58610 * 15 14 13 24 24 H 0.97003 * 119.99353 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47063 * 59.99559 * 9 7 2 26 26 H 1.09000 * 109.46901 * 299.99916 * 9 7 2 27 27 H 1.09001 * 109.47079 * 60.00321 * 11 10 9 28 28 H 1.09004 * 109.47232 * 300.00098 * 11 10 9 29 29 H 1.08995 * 109.47198 * 305.00242 * 12 11 10 30 30 H 1.09004 * 109.47345 * 184.99777 * 12 11 10 31 31 H 1.08002 * 121.00196 * 179.48648 * 17 16 15 32 32 H 1.08991 * 109.45114 * 222.31250 * 20 16 15 33 33 H 1.09004 * 109.11393 * 102.91903 * 20 16 15 34 34 H 1.09007 * 109.62749 * 291.10533 * 21 20 16 35 35 H 1.08997 * 109.62887 * 170.52760 * 21 20 16 36 36 H 1.09004 * 109.60772 * 169.88724 * 22 21 20 37 37 H 1.09005 * 109.60800 * 49.38250 * 22 21 20 38 38 H 1.09000 * 109.30932 * 282.27717 * 23 15 14 39 39 H 1.09001 * 109.30576 * 41.88000 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1796 -3.5854 0.0005 11 6 1.5650 -4.8755 0.0011 12 6 2.6479 -5.9563 0.0017 13 7 3.4058 -5.8875 1.2536 14 7 4.4449 -5.1406 1.3145 15 6 5.1736 -5.0200 2.3981 16 6 4.8183 -5.7181 3.5564 17 6 3.7190 -6.5334 3.5188 18 6 2.9927 -6.6107 2.3121 19 8 2.0044 -7.3221 2.2284 20 6 5.5982 -5.6185 4.8377 21 6 6.9879 -5.0399 4.5737 22 6 6.8316 -3.7512 3.7588 23 6 6.3795 -4.1183 2.3467 24 1 -0.4849 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 0.9446 -4.9827 -0.8887 28 1 0.9451 -4.9822 0.8914 29 1 3.3215 -5.7961 -0.8401 30 1 2.1819 -6.9376 -0.0874 31 1 3.4144 -7.0969 4.3883 32 1 5.6984 -6.6098 5.2796 33 1 5.0635 -4.9699 5.5316 34 1 7.5832 -5.7591 4.0110 35 1 7.4777 -4.8168 5.5215 36 1 7.7875 -3.2293 3.7128 37 1 6.0844 -3.1105 4.2272 38 1 7.1910 -4.6309 1.8302 39 1 6.1255 -3.2075 1.8044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590127231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:01 Heat of formation + Delta-G solvation = -60.111743 kcal Electronic energy + Delta-G solvation = -21829.975000 eV Core-core repulsion = 18544.324107 eV Total energy + Delta-G solvation = -3285.650893 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.15290 -39.57293 -38.79627 -37.98226 -35.16909 -34.52321 -33.74903 -31.17631 -30.01368 -29.14234 -26.66866 -25.03470 -24.59909 -23.74408 -23.43456 -21.04253 -19.40104 -18.77193 -18.50680 -17.54821 -17.47854 -17.05072 -16.53207 -16.35118 -15.74519 -15.45364 -15.16366 -14.83812 -14.75496 -14.24211 -14.14949 -13.99236 -13.76939 -13.63053 -13.30919 -13.08765 -12.84132 -12.67570 -12.54665 -12.44278 -12.06137 -11.72679 -11.67449 -11.39354 -11.36236 -10.96450 -10.75856 -10.65225 -10.35863 -9.42438 -8.35641 -6.49150 -0.44912 0.58604 1.24162 1.37744 1.43227 1.51741 2.29894 2.34623 2.93947 2.98138 3.16286 3.53329 3.56295 3.70427 3.89729 3.92118 4.09947 4.22717 4.30157 4.37908 4.41660 4.52567 4.56265 4.58042 4.65559 4.75266 4.81323 4.89718 5.02959 5.06479 5.09491 5.13669 5.30010 5.31668 5.44970 5.49590 5.53193 5.88750 6.41212 6.54332 6.72007 7.22466 7.23458 8.76803 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.005424 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.311796 B = 5160.814099 C = 6489.204184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.210 3.790 10 O -0.393 6.393 11 C 0.042 3.958 12 C 0.121 3.879 13 N -0.336 5.336 14 N -0.231 5.231 15 C 0.057 3.943 16 C -0.004 4.004 17 C -0.229 4.229 18 C 0.458 3.542 19 O -0.587 6.587 20 C -0.087 4.087 21 C -0.115 4.115 22 C -0.118 4.118 23 C -0.053 4.053 24 H 0.271 0.729 25 H -0.010 1.010 26 H -0.027 1.027 27 H 0.080 0.920 28 H 0.024 0.976 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.179 0.821 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.103 0.897 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.854 -10.883 9.221 22.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.135 3.865 10 O -0.313 6.313 11 C -0.036 4.036 12 C 0.001 3.999 13 N -0.155 5.155 14 N -0.055 5.055 15 C -0.112 4.112 16 C -0.011 4.011 17 C -0.258 4.258 18 C 0.261 3.739 19 O -0.472 6.472 20 C -0.124 4.124 21 C -0.152 4.152 22 C -0.156 4.156 23 C -0.092 4.092 24 H 0.080 0.920 25 H 0.008 0.992 26 H -0.009 1.009 27 H 0.098 0.902 28 H 0.042 0.958 29 H 0.140 0.860 30 H 0.148 0.852 31 H 0.196 0.804 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.122 0.878 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.200 -10.892 8.224 21.183 hybrid contribution -1.156 0.301 0.398 1.259 sum 15.044 -10.591 8.621 20.318 Atomic orbital electron populations 1.70084 1.07944 1.28810 1.50329 1.26023 0.95958 1.03563 0.93733 0.85201 0.78095 0.76348 0.79596 1.18638 1.20011 1.18810 1.21283 0.94076 0.90407 1.52519 0.91794 1.19834 0.88638 0.84884 0.93122 1.87892 1.34738 1.13501 1.95167 1.22804 0.95375 0.84790 1.00621 1.22157 0.93809 0.99803 0.84106 1.46649 1.20754 1.33813 1.14249 1.71036 0.96880 1.08114 1.29444 1.22379 0.98996 1.01256 0.88542 1.21144 0.93136 0.89625 0.97151 1.22789 0.98372 1.06278 0.98354 1.18608 0.86997 0.82071 0.86273 1.90899 1.28719 1.43415 1.84117 1.20787 0.95947 1.04550 0.91100 1.21620 0.95068 0.96658 1.01860 1.21627 1.02733 0.98410 0.92834 1.20340 0.91605 0.96996 1.00290 0.92000 0.99201 1.00912 0.90214 0.95814 0.86004 0.85150 0.80364 0.87221 0.88220 0.90458 0.88257 0.88221 0.92212 0.87844 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 2 C 0.01 0.33 5.46 84.65 0.46 0.79 16 3 Si 0.99 44.46 29.54 68.60 2.03 46.48 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.55 -33.10 9.43 25.60 0.24 -32.86 16 8 H 0.06 3.82 7.81 -2.91 -0.02 3.79 16 9 C 0.21 12.33 5.69 71.24 0.41 12.74 16 10 O -0.39 -20.11 10.17 -148.98 -1.51 -21.63 16 11 C 0.04 1.73 6.28 71.98 0.45 2.18 16 12 C 0.12 4.08 5.96 86.38 0.51 4.59 16 13 N -0.34 -12.16 3.16 -472.49 -1.49 -13.65 16 14 N -0.23 -8.03 10.65 -47.30 -0.50 -8.53 16 15 C 0.06 1.58 6.71 43.03 0.29 1.87 16 16 C 0.00 -0.10 5.73 -19.91 -0.11 -0.22 16 17 C -0.23 -6.38 9.73 22.65 0.22 -6.16 16 18 C 0.46 16.69 7.48 84.95 0.63 17.33 16 19 O -0.59 -24.47 16.66 -5.51 -0.09 -24.56 16 20 C -0.09 -1.15 5.70 29.68 0.17 -0.98 16 21 C -0.11 -1.14 5.97 30.63 0.18 -0.95 16 22 C -0.12 -1.64 5.95 30.60 0.18 -1.46 16 23 C -0.05 -1.09 5.94 29.75 0.18 -0.92 16 24 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 25 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 26 H -0.03 -1.69 8.14 -2.39 -0.02 -1.71 16 27 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 28 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.12 3.65 8.14 -2.39 -0.02 3.63 16 30 H 0.13 3.85 7.37 -2.38 -0.02 3.83 16 31 H 0.18 3.99 8.06 -2.91 -0.02 3.97 16 32 H 0.11 0.99 8.13 -2.39 -0.02 0.97 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 0.69 8.10 -2.38 -0.02 0.67 16 35 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.06 0.99 8.09 -2.38 -0.02 0.97 16 38 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -78.50 328.09 3.56 -74.95 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.03 Total: 7.88 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 3.82 Total: -4.04 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -1.71 Total: -79.08 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -1.61 Total: -46.19 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -78.50 3.56 -74.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590127231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.834 kcal (2) G-P(sol) polarization free energy of solvation -78.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds