Wall clock time and date at job start Tue Mar 31 2020 00:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00056 * 2 1 4 4 H 1.48501 * 109.47146 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47136 * 300.00109 * 3 2 1 6 6 H 1.48504 * 109.46954 * 60.00195 * 3 2 1 7 7 C 1.37879 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00154 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99776 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.62524 * 56.89895 * 9 7 2 11 11 C 1.55134 * 110.70694 * 293.60425 * 9 7 2 12 12 C 1.54907 * 101.65436 * 205.96386 * 11 9 7 13 13 N 1.47848 * 104.79301 * 37.06882 * 12 11 9 14 14 C 1.46906 * 110.99672 * 213.63719 * 13 12 11 15 15 C 1.52999 * 109.47403 * 290.84085 * 14 13 12 16 16 N 1.46496 * 109.47109 * 180.02562 * 15 14 13 17 17 C 1.35761 * 119.62542 * 270.02473 * 16 15 14 18 18 C 1.35352 * 120.70413 * 179.97438 * 17 16 15 19 19 C 1.40204 * 119.94437 * 359.97215 * 18 17 16 20 20 C 1.36401 * 119.26411 * 0.02668 * 19 18 17 21 21 C 1.34656 * 119.62268 * 90.00388 * 16 15 14 22 22 O 1.22056 * 119.98893 * 0.02562 * 21 16 15 23 23 C 1.47436 * 108.56837 * 335.90485 * 13 12 11 24 24 H 0.96999 * 119.99713 * 359.97438 * 1 2 3 25 25 H 0.96691 * 114.00301 * 303.10282 * 10 9 7 26 26 H 1.09001 * 110.99488 * 324.05733 * 11 9 7 27 27 H 1.09001 * 110.99558 * 87.83400 * 11 9 7 28 28 H 1.09002 * 110.37415 * 278.24505 * 12 11 9 29 29 H 1.08999 * 110.37903 * 155.89810 * 12 11 9 30 30 H 1.09000 * 109.46958 * 170.84490 * 14 13 12 31 31 H 1.08996 * 109.46957 * 50.84882 * 14 13 12 32 32 H 1.09000 * 109.46733 * 60.00267 * 15 14 13 33 33 H 1.08995 * 109.47031 * 300.00632 * 15 14 13 34 34 H 1.07998 * 119.64894 * 359.95492 * 17 16 15 35 35 H 1.07999 * 120.02703 * 179.97438 * 18 17 16 36 36 H 1.08003 * 120.36448 * 180.02562 * 19 18 17 37 37 H 1.08001 * 120.34103 * 180.26982 * 20 19 18 38 38 H 1.09002 * 109.88979 * 120.39563 * 23 13 12 39 39 H 1.09001 * 109.88824 * 241.58440 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3663 -2.5696 -1.1206 11 6 0.4740 -2.6840 1.3294 12 6 0.3736 -4.2270 1.4214 13 7 1.6623 -4.7214 0.8914 14 6 1.4855 -5.9955 0.1817 15 6 1.1369 -7.0952 1.1867 16 7 0.9612 -8.3657 0.4789 17 6 -0.2669 -8.7111 0.0147 18 6 -0.4538 -9.8795 -0.6426 19 6 0.6282 -10.7465 -0.8502 20 6 1.8613 -10.3977 -0.3831 21 6 2.0199 -9.1775 0.2957 22 8 3.1178 -8.8531 0.7190 23 6 2.2283 -3.6935 -0.0011 24 1 -0.4850 0.8401 0.0004 25 1 -0.2685 -1.8418 -1.1668 26 1 1.0370 -2.2785 2.1702 27 1 -0.5154 -2.2306 1.2699 28 1 -0.4525 -4.5906 0.8102 29 1 0.2453 -4.5380 2.4582 30 1 2.4097 -6.2549 -0.3347 31 1 0.6787 -5.8978 -0.5446 32 1 0.2127 -6.8357 1.7030 33 1 1.9437 -7.1927 1.9129 34 1 -1.1037 -8.0468 0.1718 35 1 -1.4357 -10.1435 -1.0069 36 1 0.4868 -11.6803 -1.3742 37 1 2.7078 -11.0505 -0.5372 38 1 3.2025 -3.3755 0.3703 39 1 2.3260 -4.0922 -1.0109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150926.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:57 Heat of formation + Delta-G solvation = -42.555833 kcal Electronic energy + Delta-G solvation = -21741.887865 eV Core-core repulsion = 18456.998253 eV Total energy + Delta-G solvation = -3284.889612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.37009 -38.51728 -36.91233 -35.52888 -34.21170 -32.11187 -30.82209 -29.90334 -28.35869 -27.60641 -24.78496 -23.92803 -23.32142 -21.94853 -20.12413 -19.52723 -17.59580 -17.35402 -17.12609 -16.40372 -15.92103 -15.13293 -14.95279 -14.75122 -14.53876 -14.19490 -13.87901 -13.85774 -12.84898 -12.77640 -12.53779 -12.17692 -12.02221 -11.98050 -11.84350 -11.38538 -11.31812 -11.04222 -10.84201 -10.63128 -10.47292 -10.39886 -10.16609 -9.93932 -9.91775 -9.31072 -8.65691 -8.15336 -8.06714 -7.77114 -6.25376 -4.31960 0.72422 1.78186 2.57735 3.19994 3.28806 3.33878 3.58268 4.27976 4.40669 4.55550 4.63471 4.77660 5.00443 5.06618 5.09923 5.14928 5.23051 5.50691 5.61145 5.77560 5.86659 5.92001 6.01002 6.04512 6.11261 6.13087 6.20933 6.36479 6.42788 6.46178 6.89872 6.98683 7.03896 7.34486 7.42533 7.56644 7.65136 7.78778 8.01648 8.09869 8.69969 9.35843 9.47197 10.82096 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040188 B = 0.003617 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.566786 B = 7740.294937 C = 7982.409704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.901 3.099 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.531 4.531 8 H 0.064 0.936 9 C 0.236 3.764 10 O -0.593 6.593 11 C -0.130 4.130 12 C 0.037 3.963 13 N -0.526 5.526 14 C 0.043 3.957 15 C 0.094 3.906 16 N -0.492 5.492 17 C 0.141 3.859 18 C -0.243 4.243 19 C -0.017 4.017 20 C -0.248 4.248 21 C 0.510 3.490 22 O -0.548 6.548 23 C 0.060 3.940 24 H 0.267 0.733 25 H 0.384 0.616 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.161 0.839 35 H 0.143 0.857 36 H 0.132 0.868 37 H 0.146 0.854 38 H 0.083 0.917 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 -16.646 0.233 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.569 4.569 8 H 0.082 0.918 9 C 0.196 3.804 10 O -0.403 6.403 11 C -0.169 4.169 12 C -0.091 4.091 13 N -0.250 5.250 14 C -0.086 4.086 15 C -0.028 4.028 16 N -0.202 5.202 17 C 0.013 3.987 18 C -0.266 4.266 19 C -0.039 4.039 20 C -0.270 4.270 21 C 0.311 3.689 22 O -0.430 6.430 23 C -0.067 4.067 24 H 0.077 0.923 25 H 0.236 0.764 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.127 0.873 34 H 0.178 0.822 35 H 0.161 0.839 36 H 0.150 0.850 37 H 0.163 0.837 38 H 0.101 0.899 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.481 -16.910 0.827 17.284 hybrid contribution -0.655 1.539 -0.626 1.786 sum -4.136 -15.370 0.201 15.918 Atomic orbital electron populations 1.69592 1.05994 1.27398 1.51105 1.25011 0.95006 0.99545 0.93684 0.86384 0.80206 0.82864 0.77644 1.19590 1.20869 1.20846 1.21657 0.93720 0.90587 1.50962 0.91807 1.19717 0.86216 0.91800 0.82709 1.86067 1.51590 1.53330 1.49335 1.23161 1.01930 0.91054 1.00769 1.23158 0.89577 0.98091 0.98253 1.63582 1.24433 1.02334 1.34679 1.22472 1.01185 0.90376 0.94582 1.22049 1.04500 0.80439 0.95782 1.45639 1.08586 1.19587 1.46365 1.22048 0.87926 0.96527 0.92196 1.20625 1.00843 0.96097 1.09022 1.21415 0.92073 0.97998 0.92440 1.22130 0.99492 0.98362 1.07023 1.17196 0.83887 0.85421 0.82361 1.90984 1.23615 1.75785 1.52592 1.22847 0.98805 0.91108 0.93963 0.92330 0.76431 0.91636 0.90811 0.94498 0.91905 0.90684 0.94368 0.89201 0.87347 0.82190 0.83909 0.85024 0.83671 0.89922 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.69 10.69 55.43 0.59 -23.10 16 2 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 3 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.16 8.21 -34.44 -0.28 -14.44 16 8 H 0.06 1.70 7.53 -52.49 -0.40 1.31 16 9 C 0.24 5.79 0.85 -89.95 -0.08 5.71 16 10 O -0.59 -15.22 13.09 -35.23 -0.46 -15.68 16 11 C -0.13 -2.92 5.67 -24.60 -0.14 -3.06 16 12 C 0.04 0.68 5.78 -2.30 -0.01 0.67 16 13 N -0.53 -10.03 5.16 -231.25 -1.19 -11.23 16 14 C 0.04 0.72 4.89 -3.82 -0.02 0.70 16 15 C 0.09 1.28 5.38 -4.04 -0.02 1.26 16 16 N -0.49 -6.22 2.58 -119.78 -0.31 -6.53 16 17 C 0.14 1.31 10.28 -16.84 -0.17 1.14 16 18 C -0.24 -1.92 10.01 -39.87 -0.40 -2.32 16 19 C -0.02 -0.15 10.10 -39.51 -0.40 -0.55 16 20 C -0.25 -2.85 9.99 -39.38 -0.39 -3.24 16 21 C 0.51 7.55 7.41 -15.45 -0.11 7.44 16 22 O -0.55 -10.34 16.64 4.87 0.08 -10.26 16 23 C 0.06 1.32 6.22 -2.84 -0.02 1.30 16 24 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 25 H 0.38 10.06 6.98 45.56 0.32 10.38 16 26 H 0.06 1.52 8.04 -51.93 -0.42 1.10 16 27 H 0.07 1.74 7.76 -51.93 -0.40 1.33 16 28 H 0.04 0.66 7.62 -51.93 -0.40 0.27 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.35 8.03 -51.93 -0.42 0.93 16 31 H 0.04 0.64 7.85 -51.93 -0.41 0.23 16 32 H 0.09 1.03 7.36 -51.93 -0.38 0.64 16 33 H 0.11 1.66 7.38 -51.93 -0.38 1.28 16 34 H 0.16 1.06 8.04 -52.49 -0.42 0.64 16 35 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 36 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 37 H 0.15 1.50 8.06 -52.49 -0.42 1.07 16 38 H 0.08 1.84 7.63 -51.93 -0.40 1.44 16 39 H 0.05 1.05 7.47 -51.93 -0.39 0.66 16 LS Contribution 321.41 15.07 4.84 4.84 Total: -1.00 -30.52 321.41 -8.53 -39.05 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -4.92 Total: 11.02 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -2.14 Total: -3.68 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: -0.91 Total: -40.86 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.38 Total: -25.94 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.52 -8.53 -39.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150926.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.505 kcal (2) G-P(sol) polarization free energy of solvation -30.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds