Wall clock time and date at job start Tue Mar 31 2020 00:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00056 * 2 1 4 4 H 1.48501 * 109.47146 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47136 * 300.00109 * 3 2 1 6 6 H 1.48504 * 109.46954 * 60.00195 * 3 2 1 7 7 C 1.37879 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00154 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99776 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.62524 * 56.89895 * 9 7 2 11 11 C 1.55134 * 110.70694 * 293.60425 * 9 7 2 12 12 C 1.54907 * 101.65436 * 205.96386 * 11 9 7 13 13 N 1.47848 * 104.79301 * 37.06882 * 12 11 9 14 14 C 1.46906 * 110.99672 * 213.63719 * 13 12 11 15 15 C 1.52999 * 109.47403 * 290.84085 * 14 13 12 16 16 N 1.46496 * 109.47109 * 180.02562 * 15 14 13 17 17 C 1.35761 * 119.62542 * 270.02473 * 16 15 14 18 18 C 1.35352 * 120.70413 * 179.97438 * 17 16 15 19 19 C 1.40204 * 119.94437 * 359.97215 * 18 17 16 20 20 C 1.36401 * 119.26411 * 0.02668 * 19 18 17 21 21 C 1.34656 * 119.62268 * 90.00388 * 16 15 14 22 22 O 1.22056 * 119.98893 * 0.02562 * 21 16 15 23 23 C 1.47436 * 108.56837 * 335.90485 * 13 12 11 24 24 H 0.96999 * 119.99713 * 359.97438 * 1 2 3 25 25 H 0.96691 * 114.00301 * 303.10282 * 10 9 7 26 26 H 1.09001 * 110.99488 * 324.05733 * 11 9 7 27 27 H 1.09001 * 110.99558 * 87.83400 * 11 9 7 28 28 H 1.09002 * 110.37415 * 278.24505 * 12 11 9 29 29 H 1.08999 * 110.37903 * 155.89810 * 12 11 9 30 30 H 1.09000 * 109.46958 * 170.84490 * 14 13 12 31 31 H 1.08996 * 109.46957 * 50.84882 * 14 13 12 32 32 H 1.09000 * 109.46733 * 60.00267 * 15 14 13 33 33 H 1.08995 * 109.47031 * 300.00632 * 15 14 13 34 34 H 1.07998 * 119.64894 * 359.95492 * 17 16 15 35 35 H 1.07999 * 120.02703 * 179.97438 * 18 17 16 36 36 H 1.08003 * 120.36448 * 180.02562 * 19 18 17 37 37 H 1.08001 * 120.34103 * 180.26982 * 20 19 18 38 38 H 1.09002 * 109.88979 * 120.39563 * 23 13 12 39 39 H 1.09001 * 109.88824 * 241.58440 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3663 -2.5696 -1.1206 11 6 0.4740 -2.6840 1.3294 12 6 0.3736 -4.2270 1.4214 13 7 1.6623 -4.7214 0.8914 14 6 1.4855 -5.9955 0.1817 15 6 1.1369 -7.0952 1.1867 16 7 0.9612 -8.3657 0.4789 17 6 -0.2669 -8.7111 0.0147 18 6 -0.4538 -9.8795 -0.6426 19 6 0.6282 -10.7465 -0.8502 20 6 1.8613 -10.3977 -0.3831 21 6 2.0199 -9.1775 0.2957 22 8 3.1178 -8.8531 0.7190 23 6 2.2283 -3.6935 -0.0011 24 1 -0.4850 0.8401 0.0004 25 1 -0.2685 -1.8418 -1.1668 26 1 1.0370 -2.2785 2.1702 27 1 -0.5154 -2.2306 1.2699 28 1 -0.4525 -4.5906 0.8102 29 1 0.2453 -4.5380 2.4582 30 1 2.4097 -6.2549 -0.3347 31 1 0.6787 -5.8978 -0.5446 32 1 0.2127 -6.8357 1.7030 33 1 1.9437 -7.1927 1.9129 34 1 -1.1037 -8.0468 0.1718 35 1 -1.4357 -10.1435 -1.0069 36 1 0.4868 -11.6803 -1.3742 37 1 2.7078 -11.0505 -0.5372 38 1 3.2025 -3.3755 0.3703 39 1 2.3260 -4.0922 -1.0109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150926.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:57 Heat of formation + Delta-G solvation = -64.898192 kcal Electronic energy + Delta-G solvation = -21742.856702 eV Core-core repulsion = 18456.998253 eV Total energy + Delta-G solvation = -3285.858449 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.31738 -40.19759 -37.95938 -37.01770 -35.48034 -34.14460 -32.28463 -30.77830 -30.03907 -29.13242 -26.46683 -25.00784 -24.44584 -23.06483 -21.70340 -21.35044 -19.18571 -18.46420 -18.25514 -17.38335 -17.10223 -16.94992 -16.53894 -16.02384 -15.88203 -15.57887 -15.24849 -15.07088 -14.36338 -14.25728 -13.82096 -13.77685 -13.27218 -13.22134 -13.14502 -12.94518 -12.76469 -12.59915 -12.54257 -12.31048 -12.13177 -12.07752 -11.85165 -11.24080 -11.02430 -10.97765 -10.65128 -10.11346 -9.35072 -8.94911 -8.25073 -6.39032 -0.05075 0.94668 1.38003 1.41805 1.52388 1.62218 2.37236 2.69758 2.99052 3.08551 3.61627 3.80227 3.85029 3.85475 4.00798 4.18318 4.22634 4.28894 4.31592 4.38749 4.49016 4.50595 4.54694 4.71021 4.80950 4.85307 5.07570 5.11072 5.22309 5.25349 5.41156 5.46077 5.54394 5.68823 5.77863 5.87308 6.09227 6.13392 6.17465 6.64550 7.01625 7.31646 7.42256 8.80698 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040188 B = 0.003617 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.566786 B = 7740.294937 C = 7982.409704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.031 3.969 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.560 4.560 8 H 0.052 0.948 9 C 0.222 3.778 10 O -0.598 6.598 11 C -0.124 4.124 12 C 0.048 3.952 13 N -0.527 5.527 14 C 0.052 3.948 15 C 0.105 3.895 16 N -0.493 5.493 17 C 0.125 3.875 18 C -0.228 4.228 19 C 0.008 3.992 20 C -0.282 4.282 21 C 0.489 3.511 22 O -0.612 6.612 23 C 0.066 3.934 24 H 0.271 0.729 25 H 0.379 0.621 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.041 0.959 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.193 0.807 35 H 0.183 0.817 36 H 0.171 0.829 37 H 0.146 0.854 38 H 0.072 0.928 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.137 -17.952 0.018 19.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.169 4.169 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.599 4.599 8 H 0.070 0.930 9 C 0.182 3.818 10 O -0.408 6.408 11 C -0.163 4.163 12 C -0.079 4.079 13 N -0.252 5.252 14 C -0.078 4.078 15 C -0.017 4.017 16 N -0.202 5.202 17 C -0.001 4.001 18 C -0.250 4.250 19 C -0.014 4.014 20 C -0.303 4.303 21 C 0.295 3.705 22 O -0.500 6.500 23 C -0.062 4.062 24 H 0.080 0.920 25 H 0.230 0.770 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.139 0.861 33 H 0.105 0.895 34 H 0.210 0.790 35 H 0.201 0.799 36 H 0.188 0.812 37 H 0.164 0.836 38 H 0.091 0.909 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.905 -18.243 0.601 19.185 hybrid contribution -0.030 1.891 -0.638 1.995 sum -5.934 -16.353 -0.036 17.396 Atomic orbital electron populations 1.69652 1.06672 1.28209 1.50707 1.25650 0.95879 1.02141 0.93213 0.85487 0.78815 0.79343 0.77824 1.19899 1.20396 1.20139 1.21906 0.93507 0.92276 1.52189 0.92997 1.19918 0.86659 0.91942 0.83320 1.86055 1.51608 1.52977 1.50163 1.22960 1.00388 0.93989 0.98965 1.23138 0.89476 0.95035 1.00283 1.63581 1.24989 1.02426 1.34191 1.22392 1.00192 0.89973 0.95224 1.21830 1.05185 0.80116 0.94562 1.45579 1.09533 1.18752 1.46375 1.22743 0.87173 0.97967 0.92219 1.21204 1.02243 0.94788 1.06780 1.21894 0.90623 0.99006 0.89883 1.22134 1.01387 0.97724 1.09076 1.17772 0.83597 0.86623 0.82539 1.90934 1.25929 1.77322 1.55790 1.22671 0.98166 0.91276 0.94071 0.91983 0.77030 0.93015 0.92165 0.93191 0.88810 0.92983 0.94038 0.86051 0.89502 0.79023 0.79933 0.81167 0.83632 0.90930 0.94332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.97 10.69 21.45 0.23 -47.74 16 2 C 0.03 1.65 5.28 84.66 0.45 2.10 16 3 Si 0.96 42.30 29.54 68.60 2.03 44.32 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 6 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.56 -30.48 8.21 25.60 0.21 -30.27 16 8 H 0.05 2.86 7.53 -2.91 -0.02 2.84 16 9 C 0.22 11.02 0.85 -10.36 -0.01 11.01 16 10 O -0.60 -30.95 13.09 -148.98 -1.95 -32.90 16 11 C -0.12 -5.54 5.67 31.98 0.18 -5.36 16 12 C 0.05 1.68 5.78 86.77 0.50 2.18 16 13 N -0.53 -19.94 5.16 -885.54 -4.57 -24.51 16 14 C 0.05 1.69 4.89 86.30 0.42 2.11 16 15 C 0.11 2.76 5.38 86.38 0.46 3.22 16 16 N -0.49 -11.87 2.58 -651.01 -1.68 -13.55 16 17 C 0.13 1.87 10.28 83.42 0.86 2.73 16 18 C -0.23 -2.52 10.01 22.08 0.22 -2.30 16 19 C 0.01 0.10 10.10 22.32 0.23 0.33 16 20 C -0.28 -6.25 9.99 22.40 0.22 -6.03 16 21 C 0.49 14.77 7.41 84.82 0.63 15.40 16 22 O -0.61 -24.62 16.64 -5.50 -0.09 -24.71 16 23 C 0.07 2.97 6.22 86.65 0.54 3.51 16 24 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 25 H 0.38 20.05 6.98 -74.06 -0.52 19.53 16 26 H 0.05 2.41 8.04 -2.39 -0.02 2.39 16 27 H 0.06 2.82 7.76 -2.39 -0.02 2.80 16 28 H 0.05 1.65 7.62 -2.39 -0.02 1.63 16 29 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.05 1.94 8.03 -2.39 -0.02 1.92 16 31 H 0.04 1.33 7.85 -2.39 -0.02 1.32 16 32 H 0.12 2.39 7.36 -2.39 -0.02 2.37 16 33 H 0.09 2.70 7.38 -2.39 -0.02 2.68 16 34 H 0.19 1.58 8.04 -2.91 -0.02 1.56 16 35 H 0.18 0.66 8.06 -2.91 -0.02 0.63 16 36 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 37 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 38 H 0.07 3.36 7.63 -2.39 -0.02 3.34 16 39 H 0.04 1.76 7.47 -2.39 -0.02 1.74 16 Total: -1.00 -69.51 321.41 -0.60 -70.11 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 0.53 Total: 30.35 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 4.91 Total: -1.37 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -6.02 Total: -85.81 kcal Atomic # 8 Polarization: -55.57 SS G_CDS: -2.04 Total: -57.61 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -69.51 -0.60 -70.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150926.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.210 kcal (2) G-P(sol) polarization free energy of solvation -69.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds