Wall clock time and date at job start Tue Mar 31 2020 00:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00237 * 2 1 4 4 H 1.48501 * 109.46909 * 270.00011 * 3 2 1 5 5 H 1.48505 * 109.47218 * 29.99707 * 3 2 1 6 6 H 1.48495 * 109.47005 * 149.99725 * 3 2 1 7 7 C 1.37878 * 119.99477 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99790 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00375 * 0.02562 * 7 2 1 10 10 O 1.42891 * 110.28691 * 60.67671 * 9 7 2 11 11 C 1.54259 * 110.32157 * 298.54694 * 9 7 2 12 12 C 1.54387 * 105.06271 * 241.10373 * 11 9 7 13 13 N 1.48559 * 104.58955 * 336.15098 * 12 11 9 14 14 C 1.46904 * 111.00066 * 159.04379 * 13 12 11 15 15 C 1.50698 * 109.47407 * 69.86567 * 14 13 12 16 16 N 1.30261 * 125.61367 * 90.02692 * 15 14 13 17 17 C 1.34481 * 108.69489 * 179.97438 * 16 15 14 18 18 C 1.34327 * 107.67332 * 0.02562 * 17 16 15 19 19 C 1.50699 * 126.44507 * 180.02562 * 18 17 16 20 20 C 1.52994 * 117.49952 * 188.61909 * 19 18 17 21 21 C 1.52996 * 117.49914 * 119.99270 * 19 18 17 22 22 O 1.33964 * 125.62500 * 269.72221 * 15 14 13 23 23 C 1.48560 * 104.22567 * 39.48140 * 13 12 11 24 24 H 0.97001 * 119.99820 * 0.02562 * 1 2 3 25 25 H 0.96701 * 113.99998 * 299.32512 * 10 9 7 26 26 H 1.09000 * 110.32330 * 122.20959 * 11 9 7 27 27 H 1.09003 * 110.41347 * 0.04301 * 11 9 7 28 28 H 1.08999 * 110.41133 * 94.92454 * 12 11 9 29 29 H 1.08999 * 110.41276 * 217.37423 * 12 11 9 30 30 H 1.08996 * 109.47493 * 189.87547 * 14 13 12 31 31 H 1.09004 * 109.46624 * 309.87385 * 14 13 12 32 32 H 1.08002 * 126.16094 * 179.97438 * 17 16 15 33 33 H 1.09003 * 115.54775 * 334.32693 * 19 18 17 34 34 H 1.09002 * 117.49994 * 359.97438 * 20 19 18 35 35 H 1.08999 * 117.50000 * 145.02143 * 20 19 18 36 36 H 1.08995 * 117.50208 * 214.97780 * 21 19 18 37 37 H 1.09002 * 117.50046 * 0.02562 * 21 19 18 38 38 H 1.09004 * 110.40940 * 201.73469 * 23 13 12 39 39 H 1.08996 * 110.50752 * 79.34858 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.4352 -2.6003 -1.1683 11 6 0.3838 -2.6172 1.2709 12 6 0.9168 -3.8659 2.0059 13 7 1.5545 -4.6829 0.9415 14 6 2.5207 -5.6306 1.5129 15 6 1.7837 -6.6995 2.2778 16 7 1.3553 -7.8265 1.7845 17 6 0.7478 -8.5218 2.7623 18 6 0.8118 -7.7873 3.8852 19 6 0.2618 -8.1671 5.2358 20 6 0.2680 -7.0956 6.3278 21 6 1.2508 -8.2660 6.3990 22 8 1.4662 -6.6501 3.5783 23 6 2.2348 -3.6864 0.0747 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2317 -1.9041 -1.2440 26 1 -0.6638 -2.7541 1.0029 27 1 0.5016 -1.7315 1.8953 28 1 1.6526 -3.5796 2.7574 29 1 0.0958 -4.4154 2.4663 30 1 3.0972 -6.0901 0.7101 31 1 3.1942 -5.1008 2.1866 32 1 0.2901 -9.4949 2.6624 33 1 -0.5723 -8.8688 5.2234 34 1 0.6702 -6.1160 6.0695 35 1 -0.5623 -7.0919 7.0341 36 1 1.0672 -9.0323 7.1520 37 1 2.2993 -8.0560 6.1874 38 1 2.4062 -4.1009 -0.9188 39 1 3.1775 -3.3716 0.5222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151932.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:35 Heat of formation + Delta-G solvation = 8.803876 kcal Electronic energy + Delta-G solvation = -21721.465934 eV Core-core repulsion = 18438.803447 eV Total energy + Delta-G solvation = -3282.662488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.22847 -38.42403 -37.41081 -34.99735 -34.54696 -32.12697 -31.42114 -29.19998 -27.98183 -26.22693 -24.17277 -23.01608 -22.66303 -22.09182 -20.61008 -20.20929 -19.45208 -17.24999 -16.84859 -16.65678 -16.00904 -15.38164 -15.05930 -14.88071 -14.24851 -14.20021 -13.58184 -13.29491 -13.09254 -12.70534 -12.38595 -12.30167 -11.86326 -11.52209 -11.31737 -11.25598 -11.22784 -11.08969 -11.02051 -10.92379 -10.57752 -10.52456 -10.38919 -10.27271 -9.87999 -9.17331 -8.61630 -8.51890 -8.12813 -7.92880 -6.21938 -4.31190 1.45256 2.61947 2.79918 3.21605 3.28934 3.31312 3.59170 4.08084 4.28423 4.33318 4.51265 4.63059 4.65192 5.01775 5.05501 5.09124 5.32140 5.41602 5.45580 5.52858 5.65395 5.69493 5.81581 5.86819 5.95202 5.95968 6.08836 6.14956 6.37544 6.39724 6.57012 6.88999 7.00301 7.27152 7.43792 7.47554 7.54775 7.78742 7.90268 8.17473 8.71755 9.37867 9.56227 10.84770 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028290 B = 0.003964 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.522973 B = 7061.788944 C = 7496.205308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.255 3.745 10 O -0.584 6.584 11 C -0.118 4.118 12 C 0.031 3.969 13 N -0.503 5.503 14 C 0.137 3.863 15 C 0.215 3.785 16 N -0.471 5.471 17 C -0.035 4.035 18 C -0.027 4.027 19 C -0.076 4.076 20 C -0.169 4.169 21 C -0.167 4.167 22 O -0.199 6.199 23 C 0.052 3.948 24 H 0.267 0.733 25 H 0.379 0.621 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.060 0.940 30 H 0.114 0.886 31 H 0.062 0.938 32 H 0.180 0.820 33 H 0.137 0.863 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 -13.219 11.357 17.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.132 4.132 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.079 0.921 9 C 0.214 3.786 10 O -0.393 6.393 11 C -0.157 4.157 12 C -0.097 4.097 13 N -0.229 5.229 14 C 0.007 3.993 15 C 0.008 3.992 16 N -0.200 5.200 17 C -0.174 4.174 18 C -0.081 4.081 19 C -0.095 4.095 20 C -0.206 4.206 21 C -0.204 4.204 22 O -0.086 6.086 23 C -0.074 4.074 24 H 0.077 0.923 25 H 0.229 0.771 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.132 0.868 31 H 0.080 0.920 32 H 0.198 0.802 33 H 0.155 0.845 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.499 -14.087 10.352 17.545 hybrid contribution 0.441 1.945 1.346 2.407 sum 1.940 -12.141 11.698 16.971 Atomic orbital electron populations 1.69711 1.05920 1.27470 1.50175 1.25001 0.94980 0.99415 0.93824 0.86481 0.79781 0.82749 0.78314 1.20414 1.21104 1.19849 1.21703 0.93522 0.90755 1.51749 0.92094 1.19185 0.86634 0.90369 0.82392 1.86139 1.51959 1.55506 1.45692 1.22853 0.99487 0.94311 0.99025 1.23221 0.97886 0.95323 0.93235 1.65481 1.26011 1.15030 1.16367 1.20623 0.92057 0.90299 0.96291 1.26181 0.98948 0.95837 0.78243 1.70475 1.13366 1.04554 1.31608 1.22972 1.04245 1.01913 0.88225 1.22282 1.01765 0.86475 0.97536 1.20352 1.01860 1.03991 0.83265 1.23048 1.02285 0.94912 1.00309 1.23088 0.96750 1.01367 0.99152 1.84357 1.57252 1.37925 1.29108 1.23118 0.96064 0.91745 0.96515 0.92283 0.77064 0.92632 0.90878 0.94477 0.92126 0.86821 0.92043 0.80249 0.84543 0.87995 0.87756 0.87723 0.88487 0.90300 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.76 10.81 55.43 0.60 -23.16 16 2 C 0.07 1.84 5.02 -17.82 -0.09 1.75 16 3 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -14.23 8.08 -34.44 -0.28 -14.51 16 8 H 0.06 1.58 7.58 -52.48 -0.40 1.19 16 9 C 0.25 6.33 1.05 -90.39 -0.10 6.24 16 10 O -0.58 -15.58 12.94 -35.23 -0.46 -16.03 16 11 C -0.12 -2.77 5.55 -25.35 -0.14 -2.92 16 12 C 0.03 0.63 5.98 -2.18 -0.01 0.61 16 13 N -0.50 -10.03 5.36 -231.41 -1.24 -11.27 16 14 C 0.14 2.24 5.44 -4.97 -0.03 2.21 16 15 C 0.22 3.63 7.34 -12.95 -0.09 3.53 16 16 N -0.47 -8.11 11.30 -11.10 -0.13 -8.24 16 17 C -0.03 -0.49 11.80 -17.77 -0.21 -0.70 16 18 C -0.03 -0.37 6.84 -35.69 -0.24 -0.61 16 19 C -0.08 -0.73 6.26 -91.78 -0.57 -1.31 16 20 C -0.17 -1.51 10.18 -26.73 -0.27 -1.79 16 21 C -0.17 -1.35 10.23 -26.73 -0.27 -1.62 16 22 O -0.20 -3.17 10.55 5.38 0.06 -3.11 16 23 C 0.05 1.12 5.76 -2.18 -0.01 1.11 16 24 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 25 H 0.38 10.19 7.32 45.56 0.33 10.53 16 26 H 0.05 1.36 7.98 -51.93 -0.41 0.95 16 27 H 0.07 1.82 7.24 -51.93 -0.38 1.44 16 28 H 0.04 0.71 7.82 -51.93 -0.41 0.30 16 29 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 30 H 0.11 1.69 8.13 -51.93 -0.42 1.27 16 31 H 0.06 0.91 7.88 -51.93 -0.41 0.50 16 32 H 0.18 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.14 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 1.09 8.00 -51.93 -0.42 0.67 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.69 8.08 -51.93 -0.42 1.27 16 39 H 0.05 1.01 7.56 -51.93 -0.39 0.62 16 LS Contribution 326.01 15.07 4.91 4.91 Total: -1.00 -29.65 326.01 -8.59 -38.24 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -4.99 Total: 11.29 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -2.33 Total: -8.00 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -0.77 Total: -42.67 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.40 Total: -19.14 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.65 -8.59 -38.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151932.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.043 kcal (2) G-P(sol) polarization free energy of solvation -29.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds