Wall clock time and date at job start Tue Mar 31 2020 00:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00237 * 2 1 4 4 H 1.48501 * 109.46909 * 270.00011 * 3 2 1 5 5 H 1.48505 * 109.47218 * 29.99707 * 3 2 1 6 6 H 1.48495 * 109.47005 * 149.99725 * 3 2 1 7 7 C 1.37878 * 119.99477 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99790 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00375 * 0.02562 * 7 2 1 10 10 O 1.42891 * 110.28691 * 60.67671 * 9 7 2 11 11 C 1.54259 * 110.32157 * 298.54694 * 9 7 2 12 12 C 1.54387 * 105.06271 * 241.10373 * 11 9 7 13 13 N 1.48559 * 104.58955 * 336.15098 * 12 11 9 14 14 C 1.46904 * 111.00066 * 159.04379 * 13 12 11 15 15 C 1.50698 * 109.47407 * 69.86567 * 14 13 12 16 16 N 1.30261 * 125.61367 * 90.02692 * 15 14 13 17 17 C 1.34481 * 108.69489 * 179.97438 * 16 15 14 18 18 C 1.34327 * 107.67332 * 0.02562 * 17 16 15 19 19 C 1.50699 * 126.44507 * 180.02562 * 18 17 16 20 20 C 1.52994 * 117.49952 * 188.61909 * 19 18 17 21 21 C 1.52996 * 117.49914 * 119.99270 * 19 18 17 22 22 O 1.33964 * 125.62500 * 269.72221 * 15 14 13 23 23 C 1.48560 * 104.22567 * 39.48140 * 13 12 11 24 24 H 0.97001 * 119.99820 * 0.02562 * 1 2 3 25 25 H 0.96701 * 113.99998 * 299.32512 * 10 9 7 26 26 H 1.09000 * 110.32330 * 122.20959 * 11 9 7 27 27 H 1.09003 * 110.41347 * 0.04301 * 11 9 7 28 28 H 1.08999 * 110.41133 * 94.92454 * 12 11 9 29 29 H 1.08999 * 110.41276 * 217.37423 * 12 11 9 30 30 H 1.08996 * 109.47493 * 189.87547 * 14 13 12 31 31 H 1.09004 * 109.46624 * 309.87385 * 14 13 12 32 32 H 1.08002 * 126.16094 * 179.97438 * 17 16 15 33 33 H 1.09003 * 115.54775 * 334.32693 * 19 18 17 34 34 H 1.09002 * 117.49994 * 359.97438 * 20 19 18 35 35 H 1.08999 * 117.50000 * 145.02143 * 20 19 18 36 36 H 1.08995 * 117.50208 * 214.97780 * 21 19 18 37 37 H 1.09002 * 117.50046 * 0.02562 * 21 19 18 38 38 H 1.09004 * 110.40940 * 201.73469 * 23 13 12 39 39 H 1.08996 * 110.50752 * 79.34858 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.4352 -2.6003 -1.1683 11 6 0.3838 -2.6172 1.2709 12 6 0.9168 -3.8659 2.0059 13 7 1.5545 -4.6829 0.9415 14 6 2.5207 -5.6306 1.5129 15 6 1.7837 -6.6995 2.2778 16 7 1.3553 -7.8265 1.7845 17 6 0.7478 -8.5218 2.7623 18 6 0.8118 -7.7873 3.8852 19 6 0.2618 -8.1671 5.2358 20 6 0.2680 -7.0956 6.3278 21 6 1.2508 -8.2660 6.3990 22 8 1.4662 -6.6501 3.5783 23 6 2.2348 -3.6864 0.0747 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2317 -1.9041 -1.2440 26 1 -0.6638 -2.7541 1.0029 27 1 0.5016 -1.7315 1.8953 28 1 1.6526 -3.5796 2.7574 29 1 0.0958 -4.4154 2.4663 30 1 3.0972 -6.0901 0.7101 31 1 3.1942 -5.1008 2.1866 32 1 0.2901 -9.4949 2.6624 33 1 -0.5723 -8.8688 5.2234 34 1 0.6702 -6.1160 6.0695 35 1 -0.5623 -7.0919 7.0341 36 1 1.0672 -9.0323 7.1520 37 1 2.2993 -8.0560 6.1874 38 1 2.4062 -4.1009 -0.9188 39 1 3.1775 -3.3716 0.5222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592151932.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:35 Heat of formation + Delta-G solvation = -14.094818 kcal Electronic energy + Delta-G solvation = -21722.458896 eV Core-core repulsion = 18438.803447 eV Total energy + Delta-G solvation = -3283.655450 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.37160 -40.13962 -38.15716 -36.79271 -35.74828 -34.16925 -32.90367 -30.59969 -29.77531 -27.74913 -25.91703 -24.03119 -23.49140 -23.19008 -21.97957 -21.46580 -21.30978 -19.06479 -18.07872 -17.89295 -17.14884 -16.92654 -16.77764 -16.04266 -15.86855 -15.49319 -15.26752 -14.71020 -14.29175 -14.24233 -14.14270 -13.33610 -13.25513 -13.11850 -12.91827 -12.73165 -12.50593 -12.44716 -12.43032 -12.28801 -12.18594 -11.96281 -11.80740 -11.78221 -11.26327 -11.10145 -10.60494 -10.14286 -9.63822 -9.43145 -8.20966 -6.37725 0.33672 1.41942 1.44179 1.51916 1.53604 1.66277 2.39028 2.87683 2.95559 3.04716 3.15515 3.48753 3.79758 3.90911 3.94733 3.98837 4.00957 4.14487 4.19536 4.37074 4.40228 4.46836 4.64593 4.71238 4.73086 4.77876 4.82780 5.01107 5.08528 5.14163 5.14963 5.17647 5.28429 5.40758 5.56457 5.62049 5.80288 5.95144 6.21137 6.69611 6.74151 7.34206 7.46991 8.84630 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028290 B = 0.003964 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.522973 B = 7061.788944 C = 7496.205308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.028 3.972 3 Si 0.961 3.039 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.560 4.560 8 H 0.060 0.940 9 C 0.236 3.764 10 O -0.596 6.596 11 C -0.109 4.109 12 C 0.046 3.954 13 N -0.515 5.515 14 C 0.139 3.861 15 C 0.192 3.808 16 N -0.494 5.494 17 C -0.052 4.052 18 C -0.022 4.022 19 C -0.089 4.089 20 C -0.174 4.174 21 C -0.151 4.151 22 O -0.211 6.211 23 C 0.061 3.939 24 H 0.269 0.731 25 H 0.373 0.627 26 H 0.035 0.965 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.127 0.873 31 H 0.080 0.920 32 H 0.210 0.790 33 H 0.166 0.834 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.135 0.865 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.090 -14.291 12.974 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.172 4.172 3 Si 0.786 3.214 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.598 4.598 8 H 0.079 0.921 9 C 0.196 3.804 10 O -0.404 6.404 11 C -0.148 4.148 12 C -0.082 4.082 13 N -0.241 5.241 14 C 0.011 3.989 15 C -0.015 4.015 16 N -0.224 5.224 17 C -0.190 4.190 18 C -0.075 4.075 19 C -0.107 4.107 20 C -0.211 4.211 21 C -0.188 4.188 22 O -0.098 6.098 23 C -0.066 4.066 24 H 0.078 0.922 25 H 0.222 0.778 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.098 0.902 32 H 0.227 0.773 33 H 0.183 0.817 34 H 0.097 0.903 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.045 -15.172 11.980 19.439 hybrid contribution 0.230 2.212 0.887 2.394 sum 2.276 -12.960 12.867 18.404 Atomic orbital electron populations 1.69806 1.06994 1.28180 1.50257 1.25714 0.95764 1.02372 0.93369 0.85518 0.78748 0.78936 0.78169 1.20345 1.20760 1.19212 1.21972 0.93693 0.91846 1.52337 0.92131 1.19498 0.87198 0.91590 0.82100 1.86134 1.52061 1.55292 1.46909 1.22634 0.98270 0.95166 0.98708 1.23028 0.98224 0.93811 0.93156 1.65377 1.27348 1.14843 1.16496 1.20654 0.91508 0.89643 0.97127 1.26103 1.00380 0.96182 0.78794 1.70430 1.13834 1.05126 1.33029 1.23492 1.04612 1.03125 0.87805 1.23096 0.99983 0.85263 0.99129 1.20708 1.03331 1.05040 0.81594 1.23107 1.03464 0.94005 1.00503 1.23177 0.95717 1.01380 0.98501 1.84352 1.57608 1.39041 1.28765 1.22955 0.95691 0.90899 0.97020 0.92192 0.77777 0.94615 0.92825 0.93182 0.91960 0.85486 0.90242 0.77342 0.81687 0.90258 0.85488 0.84741 0.89685 0.90588 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.22 10.81 21.45 0.23 -48.98 16 2 C 0.03 1.49 5.02 84.66 0.43 1.91 16 3 Si 0.96 41.70 29.54 68.60 2.03 43.73 16 4 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.56 -29.73 8.08 25.60 0.21 -29.52 16 8 H 0.06 3.14 7.58 -2.91 -0.02 3.11 16 9 C 0.24 11.89 1.05 -10.65 -0.01 11.88 16 10 O -0.60 -32.51 12.94 -148.98 -1.93 -34.44 16 11 C -0.11 -5.22 5.55 31.49 0.17 -5.05 16 12 C 0.05 1.83 5.98 86.45 0.52 2.35 16 13 N -0.52 -20.25 5.36 -886.03 -4.75 -25.00 16 14 C 0.14 4.41 5.44 85.56 0.47 4.88 16 15 C 0.19 6.33 7.34 88.34 0.65 6.98 16 16 N -0.49 -16.61 11.30 -303.83 -3.43 -20.04 16 17 C -0.05 -1.39 11.80 83.39 0.98 -0.41 16 18 C -0.02 -0.55 6.84 24.79 0.17 -0.38 16 19 C -0.09 -1.47 6.26 -11.54 -0.07 -1.54 16 20 C -0.17 -2.74 10.18 30.59 0.31 -2.42 16 21 C -0.15 -2.01 10.23 30.59 0.31 -1.69 16 22 O -0.21 -6.51 10.55 -3.67 -0.04 -6.55 16 23 C 0.06 2.61 5.76 86.45 0.50 3.11 16 24 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 25 H 0.37 20.75 7.32 -74.06 -0.54 20.20 16 26 H 0.03 1.80 7.98 -2.39 -0.02 1.78 16 27 H 0.05 2.73 7.24 -2.39 -0.02 2.71 16 28 H 0.05 1.87 7.82 -2.39 -0.02 1.85 16 29 H 0.06 2.47 8.12 -2.39 -0.02 2.45 16 30 H 0.13 3.63 8.13 -2.39 -0.02 3.61 16 31 H 0.08 2.22 7.88 -2.38 -0.02 2.20 16 32 H 0.21 3.97 8.06 -2.91 -0.02 3.95 16 33 H 0.17 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 1.62 8.00 -2.39 -0.02 1.60 16 35 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 3.25 8.08 -2.39 -0.02 3.23 16 39 H 0.06 2.51 7.56 -2.39 -0.02 2.49 16 Total: -1.00 -63.92 326.01 -2.74 -66.66 By element: Atomic # 1 Polarization: 34.03 SS G_CDS: 0.52 Total: 34.55 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: 4.63 Total: -9.92 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -7.95 Total: -94.03 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -1.97 Total: -40.99 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -63.92 -2.74 -66.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151932.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.566 kcal (2) G-P(sol) polarization free energy of solvation -63.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds