Wall clock time and date at job start Tue Mar 31 2020 00:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.50705 * 110.43163 * 123.84256 * 3 2 1 5 5 O 1.21277 * 119.99809 * 120.70435 * 4 3 2 6 6 N 1.34771 * 119.99739 * 300.70004 * 4 3 2 7 7 C 1.47018 * 125.65387 * 0.02562 * 6 4 3 8 8 C 1.54325 * 107.27774 * 181.02304 * 7 6 4 9 9 C 1.55164 * 102.93564 * 22.19343 * 8 7 6 10 10 O 1.42904 * 111.00398 * 82.57859 * 9 8 7 11 11 C 1.50700 * 111.00230 * 206.38509 * 9 8 7 12 12 H 1.07997 * 120.00023 * 118.54871 * 11 9 8 13 13 C 1.37883 * 119.99886 * 298.55131 * 11 9 8 14 14 N 1.31512 * 120.00228 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99600 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47366 * 59.99923 * 15 13 11 17 17 H 1.48501 * 109.46943 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47352 * 299.99425 * 15 13 11 19 19 C 1.47432 * 125.64715 * 179.71829 * 6 4 3 20 20 C 1.54891 * 110.48560 * 1.30333 * 3 2 1 21 21 C 1.55238 * 102.58397 * 279.18469 * 20 3 2 22 22 C 1.54266 * 104.23333 * 322.08526 * 21 20 3 23 23 C 1.53867 * 106.59916 * 23.61216 * 22 21 20 24 24 H 1.08999 * 109.88303 * 300.44396 * 7 6 4 25 25 H 1.09002 * 109.88284 * 61.45089 * 7 6 4 26 26 H 1.09001 * 110.72324 * 140.55643 * 8 7 6 27 27 H 1.09000 * 110.72203 * 263.83551 * 8 7 6 28 28 H 0.96699 * 114.00167 * 61.44639 * 10 9 8 29 29 H 0.96998 * 119.99904 * 179.97438 * 14 13 11 30 30 H 1.08996 * 110.36665 * 274.75116 * 19 6 4 31 31 H 1.09007 * 110.36359 * 37.06727 * 19 6 4 32 32 H 1.08992 * 110.75649 * 37.57743 * 20 3 2 33 33 H 1.09005 * 110.75413 * 160.94916 * 20 3 2 34 34 H 1.09005 * 110.46917 * 203.39555 * 21 20 3 35 35 H 1.08994 * 110.58209 * 80.83426 * 21 20 3 36 36 H 1.08999 * 110.03060 * 264.32313 * 22 21 20 37 37 H 1.09000 * 110.07079 * 142.92068 * 22 21 20 38 38 H 1.09001 * 110.03344 * 240.71511 * 23 22 21 39 39 H 1.08996 * 110.07527 * 119.30580 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1337 0.7874 -1.1730 5 8 3.8475 1.7500 -0.9865 6 7 2.8107 0.4212 -2.4291 7 6 1.9584 -0.7188 -2.7970 8 6 1.8920 -0.7630 -4.3382 9 6 3.1674 0.0118 -4.7631 10 8 4.3161 -0.8378 -4.7349 11 6 2.9929 0.6342 -6.1245 12 1 3.0463 1.7067 -6.2387 13 6 2.7649 -0.1658 -7.2241 14 7 2.7002 -1.4720 -7.0850 15 14 2.5493 0.6056 -8.9116 16 1 3.7740 1.3657 -9.2687 17 1 2.3187 -0.4618 -9.9180 18 1 1.3841 1.5261 -8.8900 19 6 3.2484 1.1013 -3.6618 20 6 3.1507 -1.4497 -0.0330 21 6 3.0427 -1.8851 1.4531 22 6 3.4241 -0.6192 2.2480 23 6 3.1476 0.5798 1.3241 24 1 2.3927 -1.6439 -2.4180 25 1 0.9587 -0.5827 -2.3844 26 1 1.9283 -1.7918 -4.6965 27 1 0.9960 -0.2588 -4.7002 28 1 4.2636 -1.5904 -5.3399 29 1 2.5395 -2.0347 -7.8586 30 1 2.5805 1.9304 -3.8952 31 1 4.2732 1.4570 -3.5553 32 1 2.5295 -2.0802 -0.6690 33 1 4.1884 -1.4663 -0.3662 34 1 3.7422 -2.6938 1.6652 35 1 2.0238 -2.1915 1.6896 36 1 4.4806 -0.6496 2.5142 37 1 2.8144 -0.5450 3.1485 38 1 4.0700 1.1313 1.1419 39 1 2.4035 1.2361 1.7753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592836029.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:34 Heat of formation + Delta-G solvation = -62.554168 kcal Electronic energy + Delta-G solvation = -22508.620749 eV Core-core repulsion = 19222.863944 eV Total energy + Delta-G solvation = -3285.756805 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.53450 -38.18097 -37.05454 -35.81443 -34.40734 -32.27139 -30.66067 -29.39922 -29.01690 -28.14839 -25.20162 -23.03621 -22.08619 -20.76332 -20.04865 -19.55485 -17.92337 -17.12636 -16.35007 -15.53076 -15.29887 -15.08718 -14.97404 -14.38723 -14.19439 -13.79567 -13.33190 -13.24383 -13.02277 -12.82023 -12.52797 -12.18663 -11.94981 -11.73142 -11.62178 -11.40843 -11.39596 -11.37771 -11.19434 -11.11607 -10.84908 -10.66301 -10.60946 -10.53109 -10.07917 -9.56656 -9.41901 -8.72576 -8.29193 -8.14361 -6.32964 -4.41114 2.44918 2.64668 2.83593 3.19719 3.24674 3.27260 3.38786 3.81123 4.23460 4.28362 4.34865 4.63137 4.90951 4.97638 5.20099 5.22739 5.28019 5.43712 5.44298 5.56878 5.63476 5.74025 5.77118 5.84686 5.92688 5.96790 6.06009 6.15219 6.21155 6.33624 6.53487 6.79519 6.85322 7.23087 7.27317 7.42896 7.68582 7.90759 7.97361 8.36336 8.61331 9.24994 9.33893 10.74508 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032634 B = 0.004700 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.785336 B = 5956.357545 C = 6016.544601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.225 3.775 3 C 0.014 3.986 4 C 0.540 3.460 5 O -0.536 6.536 6 N -0.597 5.597 7 C 0.090 3.910 8 C -0.135 4.135 9 C 0.250 3.750 10 O -0.581 6.581 11 C -0.537 4.537 12 H 0.065 0.935 13 C 0.075 3.925 14 N -0.895 5.895 15 Si 0.903 3.097 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.119 3.881 20 C -0.108 4.108 21 C -0.125 4.125 22 C -0.124 4.124 23 C -0.102 4.102 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.381 0.619 29 H 0.269 0.731 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.657 -2.761 13.231 13.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.093 4.093 3 C 0.007 3.993 4 C 0.325 3.675 5 O -0.414 6.414 6 N -0.328 5.328 7 C -0.033 4.033 8 C -0.174 4.174 9 C 0.210 3.790 10 O -0.390 6.390 11 C -0.576 4.576 12 H 0.083 0.917 13 C -0.128 4.128 14 N -0.534 5.534 15 Si 0.730 3.270 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.002 4.002 20 C -0.147 4.147 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.141 4.141 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.231 0.769 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.122 0.878 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.513 -1.954 13.735 13.883 hybrid contribution -0.171 -0.122 -1.474 1.489 sum -0.683 -2.075 12.261 12.454 Atomic orbital electron populations 1.81204 1.12055 1.07949 1.08119 1.28307 0.94023 0.93639 0.93366 1.19222 0.82920 0.99729 0.97429 1.19252 0.81371 0.84451 0.82430 1.90682 1.38495 1.27832 1.84407 1.48580 1.48510 1.30309 1.05390 1.22429 0.92681 0.88453 0.99733 1.23195 1.01533 1.03608 0.89054 1.19616 0.82123 0.85999 0.91298 1.86127 1.43012 1.42891 1.66959 1.21392 1.50375 0.94051 0.91739 0.91716 1.24973 0.93473 0.94874 0.99524 1.69695 1.49032 1.03306 1.31360 0.86474 0.78924 0.78904 0.82688 1.19945 1.21106 1.20054 1.22507 1.00074 0.95777 0.81836 1.22775 1.02941 0.90803 0.98140 1.22476 1.02030 0.97993 0.93779 1.22179 1.02155 0.93689 0.98166 1.22177 1.03212 0.98212 0.90481 0.91632 0.93131 0.89292 0.91324 0.76898 0.92121 0.90771 0.90660 0.89621 0.88525 0.90412 0.91425 0.90761 0.91389 0.87835 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.89 18.46 42.15 0.78 -6.11 16 2 C 0.22 3.35 11.39 -20.76 -0.24 3.11 16 3 C 0.01 0.19 0.50 -156.78 -0.08 0.11 16 4 C 0.54 9.53 6.59 -10.99 -0.07 9.46 16 5 O -0.54 -10.72 15.69 5.56 0.09 -10.64 16 6 N -0.60 -11.32 3.32 -170.38 -0.57 -11.89 16 7 C 0.09 1.61 5.59 -3.07 -0.02 1.59 16 8 C -0.14 -2.84 5.38 -24.89 -0.13 -2.98 16 9 C 0.25 5.79 0.87 -89.50 -0.08 5.72 16 10 O -0.58 -13.98 13.17 -35.23 -0.46 -14.44 16 11 C -0.54 -13.62 8.27 -34.44 -0.28 -13.90 16 12 H 0.06 1.64 7.79 -52.49 -0.41 1.23 16 13 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 14 N -0.90 -22.38 10.76 55.43 0.60 -21.79 16 15 Si 0.90 19.84 29.54 -169.99 -5.02 14.82 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 C 0.12 2.56 6.10 -2.41 -0.01 2.54 16 20 C -0.11 -1.21 4.96 -24.55 -0.12 -1.33 16 21 C -0.13 -1.09 6.60 -24.88 -0.16 -1.26 16 22 C -0.12 -1.06 6.80 -25.62 -0.17 -1.23 16 23 C -0.10 -1.15 5.70 -25.62 -0.15 -1.30 16 24 H 0.07 1.06 5.90 -51.93 -0.31 0.75 16 25 H 0.05 0.88 6.68 -51.93 -0.35 0.53 16 26 H 0.09 1.94 7.55 -51.93 -0.39 1.55 16 27 H 0.07 1.50 8.03 -51.93 -0.42 1.08 16 28 H 0.38 9.17 7.56 45.56 0.34 9.51 16 29 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 30 H 0.07 1.57 8.04 -51.93 -0.42 1.15 16 31 H 0.07 1.68 8.03 -51.93 -0.42 1.26 16 32 H 0.09 0.96 6.12 -51.93 -0.32 0.65 16 33 H 0.10 1.09 8.05 -51.93 -0.42 0.68 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 1.26 6.88 -51.93 -0.36 0.90 16 39 H 0.07 0.80 7.83 -51.93 -0.41 0.39 16 LS Contribution 315.64 15.07 4.76 4.76 Total: -1.00 -27.63 315.64 -6.14 -33.76 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -4.69 Total: 9.22 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.62 Total: 2.30 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.81 Total: -39.78 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.38 Total: -25.08 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.63 -6.14 -33.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592836029.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.791 kcal (2) G-P(sol) polarization free energy of solvation -27.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds