Wall clock time and date at job start Tue Mar 31 2020 00:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.50705 * 110.43163 * 123.84256 * 3 2 1 5 5 O 1.21277 * 119.99809 * 120.70435 * 4 3 2 6 6 N 1.34771 * 119.99739 * 300.70004 * 4 3 2 7 7 C 1.47018 * 125.65387 * 0.02562 * 6 4 3 8 8 C 1.54325 * 107.27774 * 181.02304 * 7 6 4 9 9 C 1.55164 * 102.93564 * 22.19343 * 8 7 6 10 10 O 1.42904 * 111.00398 * 82.57859 * 9 8 7 11 11 C 1.50700 * 111.00230 * 206.38509 * 9 8 7 12 12 H 1.07997 * 120.00023 * 118.54871 * 11 9 8 13 13 C 1.37883 * 119.99886 * 298.55131 * 11 9 8 14 14 N 1.31512 * 120.00228 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99600 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47366 * 59.99923 * 15 13 11 17 17 H 1.48501 * 109.46943 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47352 * 299.99425 * 15 13 11 19 19 C 1.47432 * 125.64715 * 179.71829 * 6 4 3 20 20 C 1.54891 * 110.48560 * 1.30333 * 3 2 1 21 21 C 1.55238 * 102.58397 * 279.18469 * 20 3 2 22 22 C 1.54266 * 104.23333 * 322.08526 * 21 20 3 23 23 C 1.53867 * 106.59916 * 23.61216 * 22 21 20 24 24 H 1.08999 * 109.88303 * 300.44396 * 7 6 4 25 25 H 1.09002 * 109.88284 * 61.45089 * 7 6 4 26 26 H 1.09001 * 110.72324 * 140.55643 * 8 7 6 27 27 H 1.09000 * 110.72203 * 263.83551 * 8 7 6 28 28 H 0.96699 * 114.00167 * 61.44639 * 10 9 8 29 29 H 0.96998 * 119.99904 * 179.97438 * 14 13 11 30 30 H 1.08996 * 110.36665 * 274.75116 * 19 6 4 31 31 H 1.09007 * 110.36359 * 37.06727 * 19 6 4 32 32 H 1.08992 * 110.75649 * 37.57743 * 20 3 2 33 33 H 1.09005 * 110.75413 * 160.94916 * 20 3 2 34 34 H 1.09005 * 110.46917 * 203.39555 * 21 20 3 35 35 H 1.08994 * 110.58209 * 80.83426 * 21 20 3 36 36 H 1.08999 * 110.03060 * 264.32313 * 22 21 20 37 37 H 1.09000 * 110.07079 * 142.92068 * 22 21 20 38 38 H 1.09001 * 110.03344 * 240.71511 * 23 22 21 39 39 H 1.08996 * 110.07527 * 119.30580 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1337 0.7874 -1.1730 5 8 3.8475 1.7500 -0.9865 6 7 2.8107 0.4212 -2.4291 7 6 1.9584 -0.7188 -2.7970 8 6 1.8920 -0.7630 -4.3382 9 6 3.1674 0.0118 -4.7631 10 8 4.3161 -0.8378 -4.7349 11 6 2.9929 0.6342 -6.1245 12 1 3.0463 1.7067 -6.2387 13 6 2.7649 -0.1658 -7.2241 14 7 2.7002 -1.4720 -7.0850 15 14 2.5493 0.6056 -8.9116 16 1 3.7740 1.3657 -9.2687 17 1 2.3187 -0.4618 -9.9180 18 1 1.3841 1.5261 -8.8900 19 6 3.2484 1.1013 -3.6618 20 6 3.1507 -1.4497 -0.0330 21 6 3.0427 -1.8851 1.4531 22 6 3.4241 -0.6192 2.2480 23 6 3.1476 0.5798 1.3241 24 1 2.3927 -1.6439 -2.4180 25 1 0.9587 -0.5827 -2.3844 26 1 1.9283 -1.7918 -4.6965 27 1 0.9960 -0.2588 -4.7002 28 1 4.2636 -1.5904 -5.3399 29 1 2.5395 -2.0347 -7.8586 30 1 2.5805 1.9304 -3.8952 31 1 4.2732 1.4570 -3.5553 32 1 2.5295 -2.0802 -0.6690 33 1 4.1884 -1.4663 -0.3662 34 1 3.7422 -2.6938 1.6652 35 1 2.0238 -2.1915 1.6896 36 1 4.4806 -0.6496 2.5142 37 1 2.8144 -0.5450 3.1485 38 1 4.0700 1.1313 1.1419 39 1 2.4035 1.2361 1.7753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592836029.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:34 Heat of formation + Delta-G solvation = -80.437287 kcal Electronic energy + Delta-G solvation = -22509.396220 eV Core-core repulsion = 19222.863944 eV Total energy + Delta-G solvation = -3286.532275 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.85140 -39.61813 -38.49421 -36.95543 -36.13298 -34.20696 -32.05229 -30.76848 -30.05546 -29.58368 -26.98118 -24.45972 -23.24182 -21.97119 -21.28114 -21.09221 -19.39495 -18.89995 -17.48425 -17.03425 -16.88113 -16.57499 -16.28263 -15.89897 -15.48028 -15.20976 -14.80061 -14.46624 -14.37784 -14.09895 -13.78647 -13.75380 -13.61502 -13.22722 -13.19065 -12.93455 -12.70640 -12.53576 -12.31098 -12.28349 -12.20381 -12.15086 -12.03623 -11.80063 -11.32103 -11.26647 -10.94699 -10.63265 -10.16630 -9.70832 -8.24264 -6.38687 1.14359 1.43604 1.45207 1.46503 1.49983 1.53212 1.97509 2.40044 2.63633 3.00570 3.23775 3.39583 3.55123 3.75961 3.92201 4.14533 4.21835 4.27291 4.33579 4.38085 4.48877 4.55091 4.58036 4.71420 4.80137 4.85903 5.01967 5.09469 5.09967 5.16074 5.24605 5.30783 5.41686 5.47159 5.48981 5.75984 6.06883 6.23791 6.43654 6.64508 6.90251 7.31608 7.40653 8.81431 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032634 B = 0.004700 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.785336 B = 5956.357545 C = 6016.544601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.239 3.761 3 C 0.018 3.982 4 C 0.537 3.463 5 O -0.562 6.562 6 N -0.602 5.602 7 C 0.101 3.899 8 C -0.127 4.127 9 C 0.240 3.760 10 O -0.587 6.587 11 C -0.564 4.564 12 H 0.055 0.945 13 C 0.040 3.960 14 N -0.904 5.904 15 Si 0.956 3.044 16 H -0.277 1.277 17 H -0.279 1.279 18 H -0.274 1.274 19 C 0.124 3.876 20 C -0.110 4.110 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.102 4.102 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.379 0.621 29 H 0.271 0.729 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.580 -3.757 14.554 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.079 4.079 3 C 0.012 3.988 4 C 0.324 3.676 5 O -0.441 6.441 6 N -0.333 5.333 7 C -0.021 4.021 8 C -0.165 4.165 9 C 0.200 3.800 10 O -0.395 6.395 11 C -0.603 4.603 12 H 0.073 0.927 13 C -0.162 4.162 14 N -0.543 5.543 15 Si 0.782 3.218 16 H -0.202 1.202 17 H -0.204 1.204 18 H -0.200 1.200 19 C 0.002 3.998 20 C -0.148 4.148 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.141 4.141 24 H 0.107 0.893 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.228 0.772 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.598 -2.961 15.079 15.379 hybrid contribution -0.110 0.233 -1.906 1.923 sum -0.708 -2.727 13.173 13.471 Atomic orbital electron populations 1.81225 1.12848 1.08973 1.08936 1.28450 0.94087 0.92750 0.92573 1.19344 0.82095 1.00953 0.96455 1.19950 0.80674 0.84229 0.82737 1.90668 1.39628 1.29023 1.84825 1.48618 1.48877 1.30524 1.05297 1.22348 0.93227 0.89072 0.97457 1.22979 0.99821 1.02437 0.91294 1.19705 0.82666 0.86525 0.91118 1.86114 1.43703 1.42887 1.66803 1.21644 1.51366 0.93899 0.93357 0.92683 1.25550 0.93159 0.95374 1.02092 1.69752 1.48718 1.03775 1.32058 0.85640 0.78540 0.78223 0.79380 1.20202 1.20438 1.19963 1.22260 0.99233 0.95471 0.82863 1.22879 1.02693 0.88869 1.00385 1.22479 1.02934 0.98657 0.91443 1.22191 1.03538 0.91955 0.97860 1.22251 1.02582 0.99514 0.89720 0.89337 0.92249 0.90086 0.92622 0.77183 0.91925 0.91095 0.92159 0.89570 0.88505 0.88154 0.91153 0.89232 0.89833 0.88849 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -14.02 18.46 20.01 0.37 -13.65 16 2 C 0.24 6.73 11.39 89.44 1.02 7.75 16 3 C 0.02 0.47 0.50 -53.65 -0.03 0.44 16 4 C 0.54 18.62 6.59 87.66 0.58 19.20 16 5 O -0.56 -22.46 15.69 -3.02 -0.05 -22.51 16 6 N -0.60 -22.65 3.32 -811.35 -2.69 -25.34 16 7 C 0.10 3.52 5.59 86.73 0.49 4.01 16 8 C -0.13 -5.33 5.38 31.79 0.17 -5.16 16 9 C 0.24 11.26 0.87 -10.07 -0.01 11.25 16 10 O -0.59 -28.43 13.17 -148.98 -1.96 -30.39 16 11 C -0.56 -29.04 8.27 25.60 0.21 -28.83 16 12 H 0.05 2.85 7.79 -2.91 -0.02 2.83 16 13 C 0.04 2.01 5.29 84.66 0.45 2.46 16 14 N -0.90 -45.08 10.76 21.45 0.23 -44.85 16 15 Si 0.96 40.59 29.54 68.60 2.03 42.61 16 16 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 17 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 C 0.12 5.42 6.10 86.93 0.53 5.95 16 20 C -0.11 -2.19 4.96 32.01 0.16 -2.03 16 21 C -0.12 -1.63 6.60 31.79 0.21 -1.42 16 22 C -0.12 -1.61 6.80 31.32 0.21 -1.39 16 23 C -0.10 -2.09 5.70 31.32 0.18 -1.91 16 24 H 0.09 2.69 5.90 -2.39 -0.01 2.68 16 25 H 0.06 1.98 6.68 -2.39 -0.02 1.97 16 26 H 0.08 3.52 7.55 -2.39 -0.02 3.50 16 27 H 0.05 2.45 8.03 -2.39 -0.02 2.43 16 28 H 0.38 18.37 7.56 -74.06 -0.56 17.81 16 29 H 0.27 12.96 8.31 -92.71 -0.77 12.18 16 30 H 0.07 3.09 8.04 -2.39 -0.02 3.07 16 31 H 0.06 2.77 8.03 -2.38 -0.02 2.75 16 32 H 0.09 1.71 6.12 -2.39 -0.01 1.70 16 33 H 0.10 1.97 8.05 -2.38 -0.02 1.95 16 34 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.09 2.15 6.88 -2.39 -0.02 2.13 16 39 H 0.08 1.52 7.83 -2.39 -0.02 1.50 16 Total: -1.00 -58.80 315.64 2.60 -56.19 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.52 Total: 27.62 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 4.17 Total: 10.32 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -2.09 Total: -83.84 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -2.01 Total: -52.90 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.61 kcal Total: -58.80 2.60 -56.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592836029.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.243 kcal (2) G-P(sol) polarization free energy of solvation -58.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds