Wall clock time and date at job start Tue Mar 31 2020 00:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00066 * 2 1 4 4 H 1.48497 * 109.47109 * 267.31587 * 3 2 1 5 5 H 1.48499 * 109.47361 * 27.32372 * 3 2 1 6 6 H 1.48504 * 109.46738 * 147.32416 * 3 2 1 7 7 C 1.37883 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99776 * 353.52442 * 7 2 1 9 9 C 1.50694 * 119.99994 * 173.52083 * 7 2 1 10 10 O 1.42908 * 110.91601 * 328.72916 * 9 7 2 11 11 C 1.55164 * 111.00482 * 204.83105 * 9 7 2 12 12 C 1.54323 * 102.93816 * 206.42287 * 11 9 7 13 13 N 1.47015 * 107.27421 * 22.18992 * 12 11 9 14 14 C 1.34781 * 125.64726 * 181.01895 * 13 12 11 15 15 O 1.21283 * 119.99590 * 180.02562 * 14 13 12 16 16 C 1.50692 * 119.99957 * 0.02884 * 14 13 12 17 17 C 1.53002 * 109.47229 * 179.97438 * 16 14 13 18 18 N 1.46496 * 109.47672 * 179.97438 * 17 16 14 19 19 C 1.36339 * 125.63709 * 89.99436 * 18 17 16 20 20 C 1.34851 * 108.21905 * 180.21016 * 19 18 17 21 21 C 1.40892 * 107.41565 * 359.64799 * 20 19 18 22 22 C 1.34849 * 107.41661 * 0.35252 * 21 20 19 23 23 C 1.47426 * 108.70514 * 1.28781 * 13 12 11 24 24 H 0.97006 * 119.99534 * 359.97438 * 1 2 3 25 25 H 0.96697 * 113.99574 * 292.30614 * 10 9 7 26 26 H 1.08997 * 110.71861 * 88.05611 * 11 9 7 27 27 H 1.08998 * 110.71272 * 324.78408 * 11 9 7 28 28 H 1.09001 * 109.87981 * 262.76746 * 12 11 9 29 29 H 1.09007 * 110.00649 * 141.68148 * 12 11 9 30 30 H 1.08998 * 109.47535 * 59.99509 * 16 14 13 31 31 H 1.09006 * 109.47149 * 299.99454 * 16 14 13 32 32 H 1.08998 * 109.47184 * 59.99390 * 17 16 14 33 33 H 1.09008 * 109.47149 * 300.00079 * 17 16 14 34 34 H 1.08004 * 125.89028 * 359.94630 * 19 18 17 35 35 H 1.08006 * 126.29136 * 179.77401 * 20 19 18 36 36 H 1.08003 * 126.28680 * 180.13641 * 21 20 19 37 37 H 1.07999 * 125.88967 * 179.74919 * 22 21 20 38 38 H 1.08997 * 110.37109 * 94.48006 * 23 13 12 39 39 H 1.09002 * 110.36710 * 216.80451 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5534 2.0136 -1.3985 5 1 1.4195 2.6684 0.6426 6 1 3.5173 1.4570 0.7559 7 6 2.0045 -1.1941 0.0005 8 1 1.4696 -2.1264 0.1064 9 6 3.5042 -1.1984 -0.1467 10 8 3.9411 -0.1001 -0.9500 11 6 4.0019 -2.5471 -0.7307 12 6 5.4429 -2.6481 -0.1876 13 7 5.5217 -1.7895 1.0032 14 6 6.6217 -1.5897 1.7560 15 8 6.5710 -0.8570 2.7212 16 6 7.9145 -2.2765 1.3984 17 6 8.9971 -1.8819 2.4050 18 7 10.2537 -2.5501 2.0578 19 6 11.2159 -2.0521 1.2301 20 6 12.2152 -2.9544 1.1545 21 6 11.8605 -4.0460 1.9716 22 6 10.6545 -3.7726 2.5093 23 6 4.1968 -1.1884 1.2413 24 1 -0.4850 0.8401 0.0004 25 1 3.6762 -0.1617 -1.8779 26 1 4.0014 -2.5191 -1.8203 27 1 3.3930 -3.3737 -0.3648 28 1 6.1486 -2.3010 -0.9423 29 1 5.6678 -3.6796 0.0835 30 1 8.2219 -1.9740 0.3974 31 1 7.7710 -3.3568 1.4235 32 1 8.6899 -2.1841 3.4062 33 1 9.1405 -0.8016 2.3796 34 1 11.1816 -1.1010 0.7195 35 1 13.1219 -2.8572 0.5756 36 1 12.4454 -4.9392 2.1343 37 1 10.1011 -4.4120 3.1811 38 1 3.6309 -1.7878 1.9545 39 1 4.3037 -0.1662 1.6042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:02 Heat of formation + Delta-G solvation = -29.238046 kcal Electronic energy + Delta-G solvation = -21579.756988 eV Core-core repulsion = 18295.444878 eV Total energy + Delta-G solvation = -3284.312109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.23314 -39.78083 -37.79910 -34.87281 -34.09173 -32.44609 -30.73134 -29.61584 -28.86898 -28.46888 -25.54964 -23.84721 -22.56984 -20.55699 -20.07955 -19.91584 -18.99569 -17.75085 -17.60031 -16.47194 -15.95706 -15.59246 -15.07679 -14.86956 -14.38277 -14.26614 -13.98892 -13.62526 -13.19058 -13.00949 -12.59407 -12.46709 -12.42019 -12.20508 -12.10372 -12.06268 -11.88299 -11.63391 -11.39410 -10.97242 -10.66020 -10.38527 -10.28974 -9.74042 -9.31094 -8.73907 -8.67302 -8.59498 -8.26487 -8.24277 -6.26945 -4.40372 2.16807 2.74599 2.79433 2.96353 3.38626 3.42010 3.51618 3.68273 4.44407 4.56301 4.57052 4.67472 4.93329 5.01475 5.03951 5.12386 5.13933 5.19232 5.24999 5.43733 5.52111 5.58863 5.60510 5.65520 5.92605 6.01658 6.17830 6.22059 6.41589 6.46326 6.52523 6.61447 6.89121 6.89624 7.14626 7.27435 7.37528 7.84765 8.04654 8.34851 8.53828 8.73562 9.34546 10.81541 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037349 B = 0.003725 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.510622 B = 7514.718768 C = 7691.667293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.076 3.924 3 Si 0.948 3.052 4 H -0.292 1.292 5 H -0.324 1.324 6 H -0.269 1.269 7 C -0.554 4.554 8 H 0.082 0.918 9 C 0.219 3.781 10 O -0.559 6.559 11 C -0.149 4.149 12 C 0.102 3.898 13 N -0.609 5.609 14 C 0.526 3.474 15 O -0.552 6.552 16 C -0.151 4.151 17 C 0.121 3.879 18 N -0.446 5.446 19 C -0.015 4.015 20 C -0.206 4.206 21 C -0.206 4.206 22 C -0.016 4.016 23 C 0.112 3.888 24 H 0.268 0.732 25 H 0.371 0.629 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.159 0.841 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.159 0.841 38 H 0.081 0.919 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.048 -7.100 -0.317 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.130 4.130 3 Si 0.783 3.217 4 H -0.219 1.219 5 H -0.255 1.255 6 H -0.195 1.195 7 C -0.591 4.591 8 H 0.100 0.900 9 C 0.179 3.821 10 O -0.366 6.366 11 C -0.187 4.187 12 C -0.021 4.021 13 N -0.341 5.341 14 C 0.313 3.687 15 O -0.432 6.432 16 C -0.192 4.192 17 C -0.001 4.001 18 N -0.122 5.122 19 C -0.145 4.145 20 C -0.230 4.230 21 C -0.230 4.230 22 C -0.146 4.146 23 C -0.009 4.009 24 H 0.077 0.923 25 H 0.219 0.781 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.177 0.823 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.176 0.824 38 H 0.099 0.901 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 17.831 -6.264 0.897 18.920 hybrid contribution 0.052 0.509 -0.677 0.849 sum 17.883 -5.755 0.220 18.787 Atomic orbital electron populations 1.69960 1.06850 1.27974 1.47127 1.25157 0.94918 1.00596 0.92360 0.85699 0.78012 0.80034 0.77971 1.21938 1.25526 1.19525 1.21138 0.88220 0.95444 1.54332 0.89950 1.20263 0.93516 0.81730 0.86597 1.86151 1.79950 1.46713 1.23821 1.23287 0.93218 1.01522 1.00698 1.22058 0.99509 0.93379 0.87131 1.48708 1.10867 1.46648 1.27927 1.19887 0.84117 0.81980 0.82684 1.90704 1.85005 1.39072 1.28394 1.21963 0.93185 1.02538 1.01490 1.21585 0.80644 0.98729 0.99169 1.44258 1.15671 1.15631 1.36616 1.21880 0.90921 1.01194 1.00514 1.20887 1.00446 0.95924 1.05782 1.20884 0.97402 1.00783 1.03957 1.21866 0.98382 0.88778 1.05545 1.23028 0.79900 0.98976 0.99001 0.92277 0.78097 0.90585 0.90061 0.92032 0.92248 0.88471 0.88502 0.88394 0.88390 0.82347 0.84950 0.84952 0.82350 0.90128 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.74 13.96 55.43 0.77 -24.96 16 2 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.95 23.41 24.92 -169.99 -4.24 19.17 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.32 -8.25 7.11 56.52 0.40 -7.85 16 6 H -0.27 -6.81 5.42 56.52 0.31 -6.50 16 7 C -0.55 -14.15 8.88 -34.44 -0.31 -14.46 16 8 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 9 C 0.22 4.61 0.70 -89.50 -0.06 4.55 16 10 O -0.56 -11.65 8.53 -35.23 -0.30 -11.95 16 11 C -0.15 -2.45 6.12 -24.89 -0.15 -2.60 16 12 C 0.10 1.46 6.48 -3.07 -0.02 1.44 16 13 N -0.61 -10.63 3.32 -170.39 -0.57 -11.20 16 14 C 0.53 8.70 7.85 -10.99 -0.09 8.62 16 15 O -0.55 -11.06 16.24 5.55 0.09 -10.97 16 16 C -0.15 -1.76 5.22 -27.89 -0.15 -1.91 16 17 C 0.12 1.34 5.38 -4.04 -0.02 1.32 16 18 N -0.45 -4.92 2.75 -117.13 -0.32 -5.24 16 19 C -0.02 -0.16 11.43 -16.75 -0.19 -0.35 16 20 C -0.21 -2.21 10.86 -39.78 -0.43 -2.65 16 21 C -0.21 -2.20 10.86 -39.78 -0.43 -2.63 16 22 C -0.02 -0.17 11.43 -16.75 -0.19 -0.36 16 23 C 0.11 2.36 5.89 -2.41 -0.01 2.35 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 25 H 0.37 6.57 8.99 45.56 0.41 6.98 16 26 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 27 H 0.08 1.34 7.98 -51.93 -0.41 0.93 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.10 1.09 8.10 -51.93 -0.42 0.67 16 33 H 0.10 1.12 8.10 -51.92 -0.42 0.70 16 34 H 0.16 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 37 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.08 1.71 8.03 -51.93 -0.42 1.29 16 39 H 0.08 1.85 6.50 -51.93 -0.34 1.51 16 LS Contribution 322.84 15.07 4.87 4.87 Total: -1.00 -32.11 322.84 -6.90 -39.01 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.05 Total: 6.00 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -2.15 Total: -4.72 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: -0.11 Total: -41.40 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.21 Total: -22.92 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -4.24 Total: 19.17 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.11 -6.90 -39.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.772 kcal (2) G-P(sol) polarization free energy of solvation -32.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds