Wall clock time and date at job start Tue Mar 31 2020 00:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00066 * 2 1 4 4 H 1.48497 * 109.47109 * 267.31587 * 3 2 1 5 5 H 1.48499 * 109.47361 * 27.32372 * 3 2 1 6 6 H 1.48504 * 109.46738 * 147.32416 * 3 2 1 7 7 C 1.37883 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99776 * 353.52442 * 7 2 1 9 9 C 1.50694 * 119.99994 * 173.52083 * 7 2 1 10 10 O 1.42908 * 110.91601 * 328.72916 * 9 7 2 11 11 C 1.55164 * 111.00482 * 204.83105 * 9 7 2 12 12 C 1.54323 * 102.93816 * 206.42287 * 11 9 7 13 13 N 1.47015 * 107.27421 * 22.18992 * 12 11 9 14 14 C 1.34781 * 125.64726 * 181.01895 * 13 12 11 15 15 O 1.21283 * 119.99590 * 180.02562 * 14 13 12 16 16 C 1.50692 * 119.99957 * 0.02884 * 14 13 12 17 17 C 1.53002 * 109.47229 * 179.97438 * 16 14 13 18 18 N 1.46496 * 109.47672 * 179.97438 * 17 16 14 19 19 C 1.36339 * 125.63709 * 89.99436 * 18 17 16 20 20 C 1.34851 * 108.21905 * 180.21016 * 19 18 17 21 21 C 1.40892 * 107.41565 * 359.64799 * 20 19 18 22 22 C 1.34849 * 107.41661 * 0.35252 * 21 20 19 23 23 C 1.47426 * 108.70514 * 1.28781 * 13 12 11 24 24 H 0.97006 * 119.99534 * 359.97438 * 1 2 3 25 25 H 0.96697 * 113.99574 * 292.30614 * 10 9 7 26 26 H 1.08997 * 110.71861 * 88.05611 * 11 9 7 27 27 H 1.08998 * 110.71272 * 324.78408 * 11 9 7 28 28 H 1.09001 * 109.87981 * 262.76746 * 12 11 9 29 29 H 1.09007 * 110.00649 * 141.68148 * 12 11 9 30 30 H 1.08998 * 109.47535 * 59.99509 * 16 14 13 31 31 H 1.09006 * 109.47149 * 299.99454 * 16 14 13 32 32 H 1.08998 * 109.47184 * 59.99390 * 17 16 14 33 33 H 1.09008 * 109.47149 * 300.00079 * 17 16 14 34 34 H 1.08004 * 125.89028 * 359.94630 * 19 18 17 35 35 H 1.08006 * 126.29136 * 179.77401 * 20 19 18 36 36 H 1.08003 * 126.28680 * 180.13641 * 21 20 19 37 37 H 1.07999 * 125.88967 * 179.74919 * 22 21 20 38 38 H 1.08997 * 110.37109 * 94.48006 * 23 13 12 39 39 H 1.09002 * 110.36710 * 216.80451 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5534 2.0136 -1.3985 5 1 1.4195 2.6684 0.6426 6 1 3.5173 1.4570 0.7559 7 6 2.0045 -1.1941 0.0005 8 1 1.4696 -2.1264 0.1064 9 6 3.5042 -1.1984 -0.1467 10 8 3.9411 -0.1001 -0.9500 11 6 4.0019 -2.5471 -0.7307 12 6 5.4429 -2.6481 -0.1876 13 7 5.5217 -1.7895 1.0032 14 6 6.6217 -1.5897 1.7560 15 8 6.5710 -0.8570 2.7212 16 6 7.9145 -2.2765 1.3984 17 6 8.9971 -1.8819 2.4050 18 7 10.2537 -2.5501 2.0578 19 6 11.2159 -2.0521 1.2301 20 6 12.2152 -2.9544 1.1545 21 6 11.8605 -4.0460 1.9716 22 6 10.6545 -3.7726 2.5093 23 6 4.1968 -1.1884 1.2413 24 1 -0.4850 0.8401 0.0004 25 1 3.6762 -0.1617 -1.8779 26 1 4.0014 -2.5191 -1.8203 27 1 3.3930 -3.3737 -0.3648 28 1 6.1486 -2.3010 -0.9423 29 1 5.6678 -3.6796 0.0835 30 1 8.2219 -1.9740 0.3974 31 1 7.7710 -3.3568 1.4235 32 1 8.6899 -2.1841 3.4062 33 1 9.1405 -0.8016 2.3796 34 1 11.1816 -1.1010 0.7195 35 1 13.1219 -2.8572 0.5756 36 1 12.4454 -4.9392 2.1343 37 1 10.1011 -4.4120 3.1811 38 1 3.6309 -1.7878 1.9545 39 1 4.3037 -0.1662 1.6042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:01 Heat of formation + Delta-G solvation = -51.472673 kcal Electronic energy + Delta-G solvation = -21580.721153 eV Core-core repulsion = 18295.444878 eV Total energy + Delta-G solvation = -3285.276275 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.03375 -41.13440 -39.29260 -36.40720 -35.01683 -34.49558 -32.11964 -30.69978 -29.94071 -29.62162 -27.19257 -25.09891 -23.80848 -21.61600 -21.32478 -20.80669 -20.27960 -19.47587 -18.73989 -17.61984 -17.30857 -17.04867 -16.64504 -16.35885 -15.72429 -15.39524 -15.16070 -14.81420 -14.47309 -14.17776 -14.09262 -13.87892 -13.68548 -13.53553 -13.19744 -13.11112 -13.05848 -12.87676 -12.59214 -12.41062 -12.27853 -12.15023 -11.97162 -11.29698 -11.08190 -10.69552 -10.35498 -9.64620 -9.52473 -9.03497 -8.39480 -6.51654 1.36854 1.41292 1.48007 1.53190 1.68407 1.79145 2.19013 2.26583 2.38888 2.93486 3.36585 3.57049 3.71512 3.75659 3.83258 4.22387 4.23072 4.28292 4.34482 4.42214 4.45375 4.49037 4.66917 4.75471 4.81066 4.82670 4.84404 4.93859 5.14213 5.22649 5.30131 5.43699 5.46595 5.51953 6.03988 6.13511 6.37531 6.50063 6.53594 6.57983 6.96976 7.05240 7.28616 8.73194 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037349 B = 0.003725 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.510622 B = 7514.718768 C = 7691.667293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.029 3.971 3 Si 1.002 2.998 4 H -0.274 1.274 5 H -0.339 1.339 6 H -0.281 1.281 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.214 3.786 10 O -0.564 6.564 11 C -0.140 4.140 12 C 0.105 3.895 13 N -0.613 5.613 14 C 0.522 3.478 15 O -0.595 6.595 16 C -0.132 4.132 17 C 0.126 3.874 18 N -0.450 5.450 19 C -0.027 4.027 20 C -0.219 4.219 21 C -0.219 4.219 22 C -0.025 4.025 23 C 0.116 3.884 24 H 0.267 0.733 25 H 0.386 0.614 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.174 0.826 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.177 0.823 38 H 0.069 0.931 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.665 -8.376 -1.626 22.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.171 4.171 3 Si 0.837 3.163 4 H -0.201 1.201 5 H -0.272 1.272 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.073 0.927 9 C 0.173 3.827 10 O -0.374 6.374 11 C -0.178 4.178 12 C -0.017 4.017 13 N -0.345 5.345 14 C 0.311 3.689 15 O -0.477 6.477 16 C -0.172 4.172 17 C 0.004 3.996 18 N -0.126 5.126 19 C -0.157 4.157 20 C -0.243 4.243 21 C -0.244 4.244 22 C -0.154 4.154 23 C -0.007 4.007 24 H 0.076 0.924 25 H 0.236 0.764 26 H 0.119 0.881 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.191 0.809 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.194 0.806 38 H 0.087 0.913 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 20.482 -7.572 -0.458 21.842 hybrid contribution -0.730 0.833 -0.233 1.131 sum 19.752 -6.739 -0.691 20.882 Atomic orbital electron populations 1.70062 1.08234 1.28440 1.50192 1.25789 0.95249 1.03264 0.92839 0.84805 0.76004 0.77073 0.78374 1.20060 1.27166 1.20757 1.21456 0.90961 0.93837 1.51940 0.92727 1.20130 0.90722 0.84533 0.87318 1.86085 1.79485 1.46821 1.24978 1.23182 0.94505 0.97945 1.02172 1.22262 0.98306 0.94785 0.86338 1.48757 1.09647 1.46944 1.29192 1.20748 0.85111 0.81325 0.81677 1.90688 1.85744 1.40973 1.30275 1.21871 0.90040 1.03098 1.02193 1.21456 0.80752 0.98411 0.98989 1.44271 1.15547 1.15852 1.36900 1.22237 0.90921 1.01905 1.00629 1.21192 1.01034 0.96068 1.06033 1.21194 0.97770 1.01391 1.04019 1.22261 0.98666 0.88818 1.05701 1.22594 0.82376 0.97169 0.98591 0.92395 0.76415 0.88096 0.90378 0.89374 0.88795 0.86747 0.86227 0.88634 0.89058 0.80868 0.83739 0.83659 0.80557 0.91309 0.93923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.65 13.96 21.45 0.30 -55.35 16 2 C 0.03 1.62 5.46 84.66 0.46 2.08 16 3 Si 1.00 49.03 24.92 68.60 1.71 50.74 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.34 -17.26 7.11 99.48 0.71 -16.55 16 6 H -0.28 -14.17 5.42 99.48 0.54 -13.63 16 7 C -0.54 -28.03 8.88 25.60 0.23 -27.81 16 8 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 9 C 0.21 8.72 0.70 -10.07 -0.01 8.71 16 10 O -0.56 -22.35 8.53 -148.98 -1.27 -23.62 16 11 C -0.14 -4.16 6.12 31.79 0.19 -3.97 16 12 C 0.10 2.52 6.48 86.73 0.56 3.08 16 13 N -0.61 -19.99 3.32 -811.36 -2.70 -22.68 16 14 C 0.52 16.18 7.85 87.65 0.69 16.87 16 15 O -0.59 -23.59 16.24 -3.04 -0.05 -23.64 16 16 C -0.13 -2.60 5.22 29.85 0.16 -2.45 16 17 C 0.13 2.51 5.38 86.38 0.46 2.97 16 18 N -0.45 -8.72 2.75 -524.48 -1.44 -10.16 16 19 C -0.03 -0.52 11.43 83.21 0.95 0.43 16 20 C -0.22 -4.20 10.86 22.14 0.24 -3.96 16 21 C -0.22 -4.16 10.86 22.14 0.24 -3.92 16 22 C -0.03 -0.46 11.43 83.21 0.95 0.49 16 23 C 0.12 4.85 5.89 86.93 0.51 5.37 16 24 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 25 H 0.39 12.57 8.99 -74.06 -0.67 11.91 16 26 H 0.10 2.52 8.12 -2.39 -0.02 2.50 16 27 H 0.08 2.38 7.98 -2.39 -0.02 2.37 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.10 1.95 8.10 -2.39 -0.02 1.93 16 33 H 0.09 1.95 8.10 -2.38 -0.02 1.93 16 34 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 38 H 0.07 2.97 8.03 -2.39 -0.02 2.95 16 39 H 0.04 2.07 6.50 -2.39 -0.02 2.05 16 Total: -1.00 -71.37 322.84 2.40 -68.96 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.21 Total: 17.86 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 5.64 Total: -2.10 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -3.84 Total: -88.20 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -1.32 Total: -47.26 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 1.71 Total: 50.74 kcal Total: -71.37 2.40 -68.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.488 kcal (2) G-P(sol) polarization free energy of solvation -71.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds