Wall clock time and date at job start Tue Mar 31 2020 00:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99440 * 2 1 4 4 H 1.48501 * 109.47192 * 239.99885 * 3 2 1 5 5 H 1.48500 * 109.47369 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47004 * 120.00096 * 3 2 1 7 7 C 1.37869 * 120.00697 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00601 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99916 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.78097 * 61.79418 * 9 7 2 11 11 C 1.54598 * 110.72231 * 298.55075 * 9 7 2 12 12 C 1.54000 * 105.22213 * 219.73162 * 11 9 7 13 13 N 1.47897 * 107.05672 * 358.72428 * 12 11 9 14 14 C 1.46906 * 110.99555 * 145.84575 * 13 12 11 15 15 C 1.50699 * 109.47317 * 69.87469 * 14 13 12 16 16 C 1.35446 * 126.77988 * 89.70427 * 15 14 13 17 17 C 1.41377 * 103.98865 * 179.90993 * 16 15 14 18 18 C 1.50697 * 126.80555 * 180.16660 * 17 16 15 19 19 C 1.53007 * 117.49934 * 344.00297 * 18 17 16 20 20 C 1.52999 * 117.49927 * 275.34505 * 18 17 16 21 21 N 1.30179 * 106.39379 * 0.36110 * 17 16 15 22 22 O 1.20918 * 111.60311 * 359.76758 * 21 17 16 23 23 C 1.48533 * 105.82381 * 25.32929 * 13 12 11 24 24 H 0.96995 * 120.00378 * 359.97438 * 1 2 3 25 25 H 0.96701 * 114.00035 * 298.20430 * 10 9 7 26 26 H 1.09002 * 110.31193 * 100.76520 * 11 9 7 27 27 H 1.09000 * 110.30788 * 338.69464 * 11 9 7 28 28 H 1.09000 * 109.91521 * 118.07714 * 12 11 9 29 29 H 1.08997 * 109.91264 * 239.37252 * 12 11 9 30 30 H 1.09004 * 109.46885 * 189.86932 * 14 13 12 31 31 H 1.08991 * 109.47070 * 309.87158 * 14 13 12 32 32 H 1.08005 * 128.00501 * 0.02562 * 16 15 14 33 33 H 1.09000 * 115.54955 * 129.67599 * 18 17 16 34 34 H 1.08999 * 117.49405 * 0.02562 * 19 18 17 35 35 H 1.09000 * 117.49663 * 145.01547 * 19 18 17 36 36 H 1.09008 * 117.49980 * 214.97643 * 20 18 17 37 37 H 1.09000 * 117.50157 * 359.97438 * 20 18 17 38 38 H 1.09003 * 110.66452 * 79.22844 * 23 13 12 39 39 H 1.08998 * 110.66933 * 202.35443 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0047 -1.1939 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2513 -2.4992 -0.0005 10 8 0.4505 -2.6223 -1.1776 11 6 0.3798 -2.6277 1.2699 12 6 0.5075 -4.1008 1.7005 13 7 1.3763 -4.7692 0.7077 14 6 2.1984 -5.8081 1.3424 15 6 1.3195 -6.9589 1.7598 16 6 0.9964 -8.0438 1.0160 17 6 0.1623 -8.8051 1.8666 18 6 -0.4869 -10.1271 1.5474 19 6 -0.5502 -10.5464 0.0773 20 6 -1.8220 -10.0966 0.8008 21 7 0.0628 -8.1359 2.9787 22 8 0.6984 -7.1081 2.9382 23 6 2.2265 -3.6983 0.1273 24 1 -0.4850 0.8400 0.0004 25 1 -0.2295 -1.9402 -1.2639 26 1 -0.6590 -2.3889 1.0419 27 1 0.7551 -1.9704 2.0542 28 1 0.9604 -4.1604 2.6901 29 1 -0.4756 -4.5713 1.7101 30 1 2.9478 -6.1616 0.6341 31 1 2.6947 -5.3932 2.2196 32 1 1.3059 -8.2748 0.0074 33 1 -0.3429 -10.9128 2.2891 34 1 -0.1220 -9.8661 -0.6589 35 1 -0.4482 -11.6079 -0.1482 36 1 -2.5562 -10.8625 1.0510 37 1 -2.2310 -9.1203 0.5408 38 1 3.0490 -3.4536 0.7994 39 1 2.6033 -3.9943 -0.8517 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595559425.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:40 Heat of formation + Delta-G solvation = 44.247997 kcal Electronic energy + Delta-G solvation = -21658.529166 eV Core-core repulsion = 18377.403650 eV Total energy + Delta-G solvation = -3281.125515 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.77620 -38.44384 -37.67096 -35.10373 -33.21875 -32.24681 -32.13144 -29.50885 -28.05498 -25.90949 -24.64067 -23.97621 -22.84200 -22.07015 -20.41370 -19.73237 -19.44223 -17.46802 -17.22712 -16.79281 -15.92332 -15.43625 -14.91342 -14.70402 -14.44848 -14.24029 -13.76731 -13.63714 -12.88567 -12.61388 -12.26364 -12.11874 -11.75826 -11.64576 -11.52355 -11.30818 -11.25530 -11.09410 -10.99315 -10.69090 -10.55195 -10.48948 -10.38589 -9.81113 -9.71981 -9.32691 -9.14371 -8.60761 -8.13245 -7.87932 -6.22281 -4.31168 1.58477 2.27327 3.21357 3.22838 3.28263 3.30616 3.52149 4.03970 4.27812 4.50647 4.63302 4.63681 4.81203 4.98258 5.05946 5.13662 5.36282 5.39334 5.41640 5.57245 5.64652 5.73642 5.78927 5.88800 5.90894 5.93182 5.97164 6.12110 6.14262 6.40769 6.52893 6.83342 7.00634 7.30812 7.45857 7.48805 7.53567 7.79475 8.14577 8.39195 8.71095 9.37870 9.52696 10.84746 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037536 B = 0.003645 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.767508 B = 7680.747198 C = 7837.139783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.258 3.742 10 O -0.580 6.580 11 C -0.128 4.128 12 C 0.035 3.965 13 N -0.509 5.509 14 C 0.120 3.880 15 C -0.005 4.005 16 C -0.217 4.217 17 C 0.043 3.957 18 C -0.085 4.085 19 C -0.163 4.163 20 C -0.164 4.164 21 N -0.366 5.366 22 O 0.097 5.903 23 C 0.053 3.947 24 H 0.267 0.733 25 H 0.378 0.622 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.169 0.831 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.050 0.950 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.975 -15.723 2.026 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.578 4.578 8 H 0.079 0.921 9 C 0.218 3.782 10 O -0.388 6.388 11 C -0.167 4.167 12 C -0.093 4.093 13 N -0.234 5.234 14 C -0.009 4.009 15 C -0.069 4.069 16 C -0.240 4.240 17 C -0.115 4.115 18 C -0.103 4.103 19 C -0.201 4.201 20 C -0.202 4.202 21 N -0.070 5.070 22 O 0.032 5.968 23 C -0.073 4.073 24 H 0.077 0.923 25 H 0.227 0.773 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.075 0.925 32 H 0.187 0.813 33 H 0.137 0.863 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.068 0.932 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.261 -16.579 2.710 16.801 hybrid contribution 0.810 1.721 0.105 1.905 sum 1.071 -14.857 2.815 15.160 Atomic orbital electron populations 1.69726 1.05932 1.27580 1.49998 1.24996 0.94975 0.99408 0.93702 0.86538 0.79585 0.82426 0.78751 1.20044 1.21161 1.20173 1.21540 0.93519 0.90693 1.52075 0.92091 1.19336 0.86618 0.90207 0.82062 1.86136 1.51392 1.56269 1.44993 1.22945 1.02070 0.91240 1.00483 1.22981 0.96804 0.96855 0.92661 1.64861 1.18508 1.11159 1.28880 1.20746 0.92194 0.89227 0.98716 1.24451 0.98286 0.98457 0.85664 1.22252 1.03894 0.95483 1.02344 1.22591 1.00091 0.97887 0.90970 1.20055 1.01007 0.92862 0.96421 1.23038 1.01412 1.02243 0.93363 1.23033 0.90629 1.03581 1.02955 1.73784 1.14143 0.96272 1.22820 1.84821 1.46612 1.31700 1.33711 1.23257 0.94910 0.90625 0.98557 0.92262 0.77313 0.91449 0.91879 0.94726 0.92021 0.87749 0.92520 0.81336 0.86254 0.88024 0.87970 0.88067 0.88318 0.93182 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.61 11.02 55.43 0.61 -23.00 16 2 C 0.07 1.87 5.28 -17.82 -0.09 1.78 16 3 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -14.09 8.15 -34.44 -0.28 -14.37 16 8 H 0.06 1.56 7.78 -52.49 -0.41 1.16 16 9 C 0.26 6.26 0.96 -89.82 -0.09 6.17 16 10 O -0.58 -15.02 13.09 -35.23 -0.46 -15.48 16 11 C -0.13 -2.95 5.26 -25.37 -0.13 -3.08 16 12 C 0.03 0.68 6.17 -2.75 -0.02 0.66 16 13 N -0.51 -9.51 5.26 -231.79 -1.22 -10.73 16 14 C 0.12 1.77 5.33 -4.97 -0.03 1.75 16 15 C 0.00 -0.07 6.49 -35.31 -0.23 -0.30 16 16 C -0.22 -2.98 10.40 -39.38 -0.41 -3.39 16 17 C 0.04 0.61 6.95 -82.10 -0.57 0.04 16 18 C -0.08 -0.92 6.33 -91.77 -0.58 -1.50 16 19 C -0.16 -1.41 10.05 -26.69 -0.27 -1.68 16 20 C -0.16 -1.58 10.24 -26.69 -0.27 -1.85 16 21 N -0.37 -5.95 12.07 33.42 0.40 -5.55 16 22 O 0.10 1.59 11.20 17.17 0.19 1.79 16 23 C 0.05 1.09 5.69 -1.81 -0.01 1.08 16 24 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 25 H 0.38 9.90 7.48 45.56 0.34 10.24 16 26 H 0.07 1.64 7.99 -51.93 -0.41 1.23 16 27 H 0.06 1.50 7.84 -51.93 -0.41 1.09 16 28 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.10 1.30 8.11 -51.93 -0.42 0.88 16 31 H 0.06 0.79 7.81 -51.93 -0.41 0.38 16 32 H 0.17 1.94 7.62 -52.48 -0.40 1.54 16 33 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.10 0.90 7.33 -51.93 -0.38 0.52 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.97 7.92 -51.93 -0.41 0.55 16 39 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 LS Contribution 325.39 15.07 4.90 4.90 Total: -1.00 -28.30 325.39 -8.54 -36.84 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -4.97 Total: 10.64 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -2.98 Total: -14.69 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: -0.20 Total: -39.27 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.27 Total: -13.69 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.30 -8.54 -36.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595559425.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.090 kcal (2) G-P(sol) polarization free energy of solvation -28.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds