Wall clock time and date at job start Tue Mar 31 2020 00:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99440 * 2 1 4 4 H 1.48501 * 109.47192 * 239.99885 * 3 2 1 5 5 H 1.48500 * 109.47369 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47004 * 120.00096 * 3 2 1 7 7 C 1.37869 * 120.00697 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00601 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99916 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.78097 * 61.79418 * 9 7 2 11 11 C 1.54598 * 110.72231 * 298.55075 * 9 7 2 12 12 C 1.54000 * 105.22213 * 219.73162 * 11 9 7 13 13 N 1.47897 * 107.05672 * 358.72428 * 12 11 9 14 14 C 1.46906 * 110.99555 * 145.84575 * 13 12 11 15 15 C 1.50699 * 109.47317 * 69.87469 * 14 13 12 16 16 C 1.35446 * 126.77988 * 89.70427 * 15 14 13 17 17 C 1.41377 * 103.98865 * 179.90993 * 16 15 14 18 18 C 1.50697 * 126.80555 * 180.16660 * 17 16 15 19 19 C 1.53007 * 117.49934 * 344.00297 * 18 17 16 20 20 C 1.52999 * 117.49927 * 275.34505 * 18 17 16 21 21 N 1.30179 * 106.39379 * 0.36110 * 17 16 15 22 22 O 1.20918 * 111.60311 * 359.76758 * 21 17 16 23 23 C 1.48533 * 105.82381 * 25.32929 * 13 12 11 24 24 H 0.96995 * 120.00378 * 359.97438 * 1 2 3 25 25 H 0.96701 * 114.00035 * 298.20430 * 10 9 7 26 26 H 1.09002 * 110.31193 * 100.76520 * 11 9 7 27 27 H 1.09000 * 110.30788 * 338.69464 * 11 9 7 28 28 H 1.09000 * 109.91521 * 118.07714 * 12 11 9 29 29 H 1.08997 * 109.91264 * 239.37252 * 12 11 9 30 30 H 1.09004 * 109.46885 * 189.86932 * 14 13 12 31 31 H 1.08991 * 109.47070 * 309.87158 * 14 13 12 32 32 H 1.08005 * 128.00501 * 0.02562 * 16 15 14 33 33 H 1.09000 * 115.54955 * 129.67599 * 18 17 16 34 34 H 1.08999 * 117.49405 * 0.02562 * 19 18 17 35 35 H 1.09000 * 117.49663 * 145.01547 * 19 18 17 36 36 H 1.09008 * 117.49980 * 214.97643 * 20 18 17 37 37 H 1.09000 * 117.50157 * 359.97438 * 20 18 17 38 38 H 1.09003 * 110.66452 * 79.22844 * 23 13 12 39 39 H 1.08998 * 110.66933 * 202.35443 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0047 -1.1939 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2513 -2.4992 -0.0005 10 8 0.4505 -2.6223 -1.1776 11 6 0.3798 -2.6277 1.2699 12 6 0.5075 -4.1008 1.7005 13 7 1.3763 -4.7692 0.7077 14 6 2.1984 -5.8081 1.3424 15 6 1.3195 -6.9589 1.7598 16 6 0.9964 -8.0438 1.0160 17 6 0.1623 -8.8051 1.8666 18 6 -0.4869 -10.1271 1.5474 19 6 -0.5502 -10.5464 0.0773 20 6 -1.8220 -10.0966 0.8008 21 7 0.0628 -8.1359 2.9787 22 8 0.6984 -7.1081 2.9382 23 6 2.2265 -3.6983 0.1273 24 1 -0.4850 0.8400 0.0004 25 1 -0.2295 -1.9402 -1.2639 26 1 -0.6590 -2.3889 1.0419 27 1 0.7551 -1.9704 2.0542 28 1 0.9604 -4.1604 2.6901 29 1 -0.4756 -4.5713 1.7101 30 1 2.9478 -6.1616 0.6341 31 1 2.6947 -5.3932 2.2196 32 1 1.3059 -8.2748 0.0074 33 1 -0.3429 -10.9128 2.2891 34 1 -0.1220 -9.8661 -0.6589 35 1 -0.4482 -11.6079 -0.1482 36 1 -2.5562 -10.8625 1.0510 37 1 -2.2310 -9.1203 0.5408 38 1 3.0490 -3.4536 0.7994 39 1 2.6033 -3.9943 -0.8517 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595559425.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:39 Heat of formation + Delta-G solvation = 25.298650 kcal Electronic energy + Delta-G solvation = -21659.350871 eV Core-core repulsion = 18377.403650 eV Total energy + Delta-G solvation = -3281.947221 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.90211 -40.09440 -38.47020 -36.82234 -34.33399 -34.14614 -33.56609 -31.05664 -29.80593 -27.46595 -25.81925 -25.45547 -23.75440 -22.95589 -21.95370 -21.42745 -20.61460 -19.01805 -18.61121 -18.11460 -17.14209 -16.87710 -16.70816 -15.99640 -15.81086 -15.47250 -15.19867 -14.93344 -14.43813 -14.20493 -13.89815 -13.26234 -13.13726 -13.02531 -12.96598 -12.74046 -12.55834 -12.41188 -12.37007 -12.29476 -12.19621 -12.03519 -11.65201 -11.33600 -11.08405 -10.68545 -10.59768 -10.41122 -10.07369 -9.36756 -8.19361 -6.35394 0.43823 1.22254 1.43867 1.45017 1.52272 2.10292 2.40261 2.73240 3.05137 3.13356 3.20128 3.50868 3.86490 3.94557 3.95292 4.05479 4.10597 4.17157 4.22077 4.36230 4.42567 4.47439 4.62983 4.70961 4.73552 4.78842 4.85340 4.95583 5.08676 5.10313 5.12727 5.21204 5.23161 5.46572 5.57691 5.72061 5.86691 6.06612 6.22681 6.71404 7.27077 7.36665 7.48214 8.85923 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037536 B = 0.003645 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.767508 B = 7680.747198 C = 7837.139783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.029 3.971 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.561 4.561 8 H 0.061 0.939 9 C 0.238 3.762 10 O -0.589 6.589 11 C -0.120 4.120 12 C 0.047 3.953 13 N -0.516 5.516 14 C 0.123 3.877 15 C -0.017 4.017 16 C -0.213 4.213 17 C 0.044 3.956 18 C -0.105 4.105 19 C -0.143 4.143 20 C -0.167 4.167 21 N -0.394 5.394 22 O 0.077 5.923 23 C 0.063 3.937 24 H 0.267 0.733 25 H 0.371 0.629 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.133 0.867 31 H 0.068 0.932 32 H 0.192 0.808 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.053 -17.205 1.622 17.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.172 4.172 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.599 4.599 8 H 0.079 0.921 9 C 0.198 3.802 10 O -0.396 6.396 11 C -0.159 4.159 12 C -0.081 4.081 13 N -0.241 5.241 14 C -0.006 4.006 15 C -0.081 4.081 16 C -0.235 4.235 17 C -0.115 4.115 18 C -0.124 4.124 19 C -0.180 4.180 20 C -0.205 4.205 21 N -0.102 5.102 22 O 0.014 5.986 23 C -0.064 4.064 24 H 0.077 0.923 25 H 0.219 0.781 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.151 0.849 31 H 0.086 0.914 32 H 0.209 0.791 33 H 0.148 0.852 34 H 0.119 0.881 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.359 -18.060 2.311 18.258 hybrid contribution 0.439 2.130 0.213 2.185 sum 1.798 -15.931 2.525 16.229 Atomic orbital electron populations 1.69830 1.06973 1.28132 1.50295 1.25708 0.95746 1.02350 0.93396 0.85601 0.78394 0.78758 0.78785 1.19805 1.21039 1.19596 1.21865 0.93757 0.91944 1.52347 0.92089 1.19639 0.87279 0.91494 0.81749 1.86129 1.51406 1.55993 1.46084 1.22741 1.00191 0.93268 0.99693 1.22792 0.97203 0.94529 0.93607 1.64761 1.19014 1.11095 1.29248 1.20863 0.92019 0.87977 0.99731 1.24578 0.98741 0.99024 0.85739 1.22609 1.03037 0.94815 1.03026 1.23170 0.99381 0.98689 0.90251 1.20257 1.02041 0.91767 0.98331 1.23168 0.99611 1.03743 0.91520 1.23093 0.91036 1.03400 1.02982 1.73779 1.15213 0.96859 1.24308 1.84784 1.47229 1.32090 1.34501 1.23097 0.94338 0.89636 0.99285 0.92329 0.78113 0.93873 0.93453 0.93249 0.92610 0.84915 0.91364 0.79093 0.85166 0.88149 0.85311 0.86037 0.90208 0.91931 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.98 11.02 21.45 0.24 -48.74 16 2 C 0.03 1.49 5.28 84.65 0.45 1.94 16 3 Si 0.96 41.49 29.54 68.60 2.03 43.52 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.56 -29.30 8.15 25.60 0.21 -29.09 16 8 H 0.06 3.10 7.78 -2.91 -0.02 3.08 16 9 C 0.24 11.60 0.96 -10.28 -0.01 11.59 16 10 O -0.59 -30.90 13.09 -148.98 -1.95 -32.85 16 11 C -0.12 -5.59 5.26 31.48 0.17 -5.43 16 12 C 0.05 1.82 6.17 86.45 0.53 2.35 16 13 N -0.52 -18.53 5.26 -887.24 -4.66 -23.20 16 14 C 0.12 3.32 5.33 85.56 0.46 3.78 16 15 C -0.02 -0.49 6.49 25.04 0.16 -0.32 16 16 C -0.21 -5.43 10.40 22.40 0.23 -5.19 16 17 C 0.04 1.17 6.95 43.58 0.30 1.48 16 18 C -0.11 -2.08 6.33 -11.54 -0.07 -2.15 16 19 C -0.14 -2.05 10.05 30.62 0.31 -1.74 16 20 C -0.17 -2.90 10.24 30.62 0.31 -2.59 16 21 N -0.39 -12.66 12.07 -49.56 -0.60 -13.25 16 22 O 0.08 2.47 11.20 71.62 0.80 3.27 16 23 C 0.06 2.51 5.69 86.70 0.49 3.00 16 24 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 25 H 0.37 20.02 7.48 -74.06 -0.55 19.47 16 26 H 0.04 2.17 7.99 -2.39 -0.02 2.15 16 27 H 0.05 2.30 7.84 -2.39 -0.02 2.28 16 28 H 0.05 1.76 7.57 -2.39 -0.02 1.75 16 29 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.13 2.85 8.11 -2.39 -0.02 2.83 16 31 H 0.07 1.73 7.81 -2.39 -0.02 1.71 16 32 H 0.19 3.83 7.62 -2.91 -0.02 3.81 16 33 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.10 1.48 7.33 -2.39 -0.02 1.46 16 35 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.12 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 2.30 7.92 -2.39 -0.02 2.28 16 39 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -60.86 325.39 -0.10 -60.96 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: 0.50 Total: 32.66 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 3.54 Total: -22.38 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -5.03 Total: -85.19 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -1.15 Total: -29.57 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -60.86 -0.10 -60.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595559425.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.262 kcal (2) G-P(sol) polarization free energy of solvation -60.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds