Wall clock time and date at job start Tue Mar 31 2020 00:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00338 * 2 1 4 4 H 1.48500 * 109.47134 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47340 * 240.00216 * 3 2 1 6 6 H 1.48494 * 109.47350 * 120.00062 * 3 2 1 7 7 C 1.37880 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99438 * 172.50823 * 7 2 1 9 9 C 1.50701 * 120.00109 * 352.50878 * 7 2 1 10 10 O 1.42896 * 110.28725 * 301.17847 * 9 7 2 11 11 C 1.54258 * 110.32198 * 63.30518 * 9 7 2 12 12 C 1.54378 * 105.06188 * 118.89277 * 11 9 7 13 13 N 1.48566 * 104.59347 * 23.85440 * 12 11 9 14 14 C 1.46901 * 110.99953 * 200.95724 * 13 12 11 15 15 C 1.50692 * 109.47154 * 290.12644 * 14 13 12 16 16 C 1.34333 * 126.44405 * 89.68648 * 15 14 13 17 17 N 1.34481 * 107.66837 * 179.87670 * 16 15 14 18 18 C 1.30257 * 108.69783 * 0.39266 * 17 16 15 19 19 C 1.50709 * 125.61879 * 179.73675 * 18 17 16 20 20 C 1.53001 * 117.49576 * 8.64732 * 19 18 17 21 21 C 1.53001 * 117.49597 * 300.02586 * 19 18 17 22 22 O 1.33961 * 108.76301 * 359.75779 * 18 17 16 23 23 C 1.48564 * 104.21671 * 320.51485 * 13 12 11 24 24 H 0.96998 * 120.00539 * 174.53508 * 1 2 3 25 25 H 0.96699 * 114.00373 * 58.84503 * 10 9 7 26 26 H 1.09000 * 110.32289 * 237.79222 * 11 9 7 27 27 H 1.09001 * 110.32243 * 359.97438 * 11 9 7 28 28 H 1.08997 * 110.40834 * 142.62720 * 12 11 9 29 29 H 1.08995 * 110.41533 * 265.07329 * 12 11 9 30 30 H 1.09005 * 109.46899 * 50.12243 * 14 13 12 31 31 H 1.08998 * 109.46958 * 170.12013 * 14 13 12 32 32 H 1.07998 * 126.16864 * 0.02562 * 16 15 14 33 33 H 1.08993 * 115.54721 * 154.35600 * 19 18 17 34 34 H 1.09002 * 117.49956 * 359.97438 * 20 19 18 35 35 H 1.08992 * 117.49840 * 145.02204 * 20 19 18 36 36 H 1.08994 * 117.49607 * 214.98000 * 21 19 18 37 37 H 1.09001 * 117.49891 * 359.97438 * 21 19 18 38 38 H 1.09004 * 110.40993 * 280.70135 * 23 13 12 39 39 H 1.09005 * 110.40578 * 158.26390 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 -1.2125 6 1 3.1029 1.6963 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0776 -1.1981 -0.1214 9 6 1.2605 -2.4936 0.1713 10 8 0.5471 -2.4970 1.4094 11 6 0.2898 -2.7139 -1.0071 12 6 0.7653 -4.0195 -1.6799 13 7 1.4951 -4.7476 -0.6100 14 6 2.4145 -5.7405 -1.1818 15 6 1.6211 -6.8673 -1.7913 16 6 1.1757 -6.9364 -3.0568 17 7 0.5178 -8.1011 -3.1950 18 6 0.5434 -8.7328 -2.0561 19 6 -0.0850 -10.0751 -1.7827 20 6 -0.6394 -10.8522 -2.9783 21 6 -1.5972 -10.2002 -1.9790 22 8 1.2200 -7.9926 -1.1679 23 6 2.2410 -3.6845 0.1114 24 1 -0.4851 -0.8362 -0.0800 25 1 -0.0950 -1.7792 1.4954 26 1 -0.7307 -2.8266 -0.6410 27 1 0.3511 -1.8820 -1.7088 28 1 -0.0888 -4.6035 -2.0225 29 1 1.4333 -3.7970 -2.5119 30 1 3.0258 -5.2688 -1.9512 31 1 3.0592 -6.1336 -0.3958 32 1 1.3218 -6.1919 -3.8254 33 1 0.3669 -10.6497 -0.9742 34 1 -0.5501 -10.3925 -3.9626 35 1 -0.5523 -11.9384 -2.9566 36 1 -2.1401 -10.8575 -1.2999 37 1 -2.1376 -9.3117 -2.3055 38 1 3.1399 -3.4096 -0.4404 39 1 2.4979 -4.0163 1.1174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600167634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:27 Heat of formation + Delta-G solvation = 8.873119 kcal Electronic energy + Delta-G solvation = -21635.825103 eV Core-core repulsion = 18353.165617 eV Total energy + Delta-G solvation = -3282.659485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.27428 -38.72368 -37.50482 -35.48108 -34.52692 -32.24881 -31.66352 -29.11327 -28.01101 -25.79778 -24.10905 -23.82980 -22.68287 -21.69687 -20.72456 -20.37046 -19.60028 -17.88088 -17.38703 -16.64384 -15.68724 -15.54694 -14.89449 -14.81433 -14.41505 -14.03695 -13.85550 -13.60933 -13.33302 -12.81646 -12.51798 -12.23736 -11.84348 -11.72352 -11.54320 -11.48894 -11.15872 -11.02178 -10.91544 -10.87659 -10.69661 -10.50362 -10.43825 -10.26650 -10.17059 -9.22418 -8.67752 -8.60203 -8.14709 -8.03215 -6.53028 -4.35370 1.43479 2.53208 2.65721 3.33979 3.36886 3.55290 3.59778 3.94342 4.34905 4.45145 4.49583 4.59325 4.68415 4.94953 5.02725 5.07486 5.25760 5.35231 5.37231 5.46192 5.51077 5.65318 5.73723 5.78847 5.82641 5.87111 5.94195 6.10679 6.19637 6.34719 6.35669 6.63623 6.70845 7.00583 7.13416 7.21027 7.35754 7.76661 7.92856 8.18187 8.60252 9.09081 9.36976 10.78167 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041269 B = 0.003526 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.311929 B = 7938.110145 C = 8031.924686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.031 3.969 3 Si 1.068 2.932 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.617 4.617 8 H 0.055 0.945 9 C 0.237 3.763 10 O -0.583 6.583 11 C -0.142 4.142 12 C 0.037 3.963 13 N -0.509 5.509 14 C 0.123 3.877 15 C -0.017 4.017 16 C -0.041 4.041 17 N -0.480 5.480 18 C 0.210 3.790 19 C -0.077 4.077 20 C -0.148 4.148 21 C -0.156 4.156 22 O -0.190 6.190 23 C 0.059 3.941 24 H 0.273 0.727 25 H 0.369 0.631 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.181 0.819 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.052 0.948 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.995 -16.631 -5.226 17.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.174 4.174 3 Si 0.895 3.105 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.656 4.656 8 H 0.074 0.926 9 C 0.197 3.803 10 O -0.390 6.390 11 C -0.181 4.181 12 C -0.091 4.091 13 N -0.233 5.233 14 C -0.006 4.006 15 C -0.070 4.070 16 C -0.181 4.181 17 N -0.210 5.210 18 C 0.004 3.996 19 C -0.096 4.096 20 C -0.185 4.185 21 C -0.194 4.194 22 O -0.076 6.076 23 C -0.068 4.068 24 H 0.086 0.914 25 H 0.217 0.783 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.198 0.802 33 H 0.149 0.851 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.070 0.930 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.544 -16.068 -5.176 16.890 hybrid contribution 0.838 -0.381 -0.214 0.945 sum 1.383 -16.449 -5.390 17.365 Atomic orbital electron populations 1.70893 1.06838 1.31317 1.45707 1.25891 0.96408 1.02810 0.92300 0.83568 0.75032 0.75191 0.76705 1.20591 1.21358 1.21190 1.22467 0.95507 0.92092 1.55507 0.92626 1.19446 0.87726 0.92367 0.80802 1.86282 1.57801 1.54749 1.40185 1.23198 0.99536 0.95075 1.00308 1.23109 0.97615 0.95399 0.92933 1.65464 1.23378 1.12619 1.21869 1.20628 0.92325 0.88598 0.99047 1.23368 1.02911 0.88179 0.92584 1.22997 1.01555 0.96694 0.96805 1.70307 1.20106 1.06300 1.24253 1.24961 0.96321 0.95376 0.82974 1.19997 0.96857 0.89048 1.03745 1.23075 1.01310 0.99149 0.94963 1.23126 0.90184 1.03608 1.02461 1.84365 1.55147 1.27030 1.41090 1.23010 0.95433 0.90253 0.98092 0.91414 0.78322 0.92670 0.90631 0.91557 0.94217 0.91093 0.89043 0.80218 0.85079 0.87171 0.87613 0.87473 0.87977 0.92992 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.31 12.58 55.43 0.70 -24.61 16 2 C 0.03 0.82 5.06 -17.82 -0.09 0.73 16 3 Si 1.07 23.87 29.91 -169.99 -5.08 18.79 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.62 -16.49 8.05 -34.44 -0.28 -16.77 16 8 H 0.06 1.47 7.58 -52.48 -0.40 1.08 16 9 C 0.24 5.83 1.03 -90.39 -0.09 5.74 16 10 O -0.58 -15.27 12.95 -35.23 -0.46 -15.73 16 11 C -0.14 -3.25 4.65 -25.35 -0.12 -3.37 16 12 C 0.04 0.72 5.69 -2.18 -0.01 0.70 16 13 N -0.51 -9.78 5.36 -231.41 -1.24 -11.03 16 14 C 0.12 1.90 5.36 -4.98 -0.03 1.88 16 15 C -0.02 -0.26 6.51 -35.69 -0.23 -0.49 16 16 C -0.04 -0.62 11.25 -17.77 -0.20 -0.82 16 17 N -0.48 -7.40 10.84 -11.10 -0.12 -7.52 16 18 C 0.21 3.04 7.89 -12.94 -0.10 2.93 16 19 C -0.08 -0.79 6.33 -91.77 -0.58 -1.37 16 20 C -0.15 -1.22 10.13 -26.73 -0.27 -1.49 16 21 C -0.16 -1.35 10.23 -26.73 -0.27 -1.63 16 22 O -0.19 -3.09 10.77 5.38 0.06 -3.03 16 23 C 0.06 1.25 5.76 -2.18 -0.01 1.24 16 24 H 0.27 7.43 4.51 -40.82 -0.18 7.25 16 25 H 0.37 9.61 6.83 45.56 0.31 9.92 16 26 H 0.05 1.28 7.69 -51.93 -0.40 0.88 16 27 H 0.08 1.84 7.13 -51.93 -0.37 1.47 16 28 H 0.07 1.24 7.94 -51.93 -0.41 0.83 16 29 H 0.04 0.71 7.82 -51.93 -0.41 0.30 16 30 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 31 H 0.09 1.31 8.13 -51.93 -0.42 0.89 16 32 H 0.18 2.34 8.06 -52.49 -0.42 1.92 16 33 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.11 1.05 7.88 -51.93 -0.41 0.64 16 35 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.05 7.55 -51.93 -0.39 0.66 16 39 H 0.08 1.67 8.08 -51.93 -0.42 1.25 16 LS Contribution 321.33 15.07 4.84 4.84 Total: -1.00 -30.66 321.33 -8.41 -39.07 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -4.82 Total: 11.91 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -2.29 Total: -12.71 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -0.66 Total: -43.16 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.40 Total: -18.76 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.08 Total: 18.79 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.66 -8.41 -39.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600167634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.946 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds