Wall clock time and date at job start Tue Mar 31 2020 00:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00338 * 2 1 4 4 H 1.48500 * 109.47134 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47340 * 240.00216 * 3 2 1 6 6 H 1.48494 * 109.47350 * 120.00062 * 3 2 1 7 7 C 1.37880 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99438 * 172.50823 * 7 2 1 9 9 C 1.50701 * 120.00109 * 352.50878 * 7 2 1 10 10 O 1.42896 * 110.28725 * 301.17847 * 9 7 2 11 11 C 1.54258 * 110.32198 * 63.30518 * 9 7 2 12 12 C 1.54378 * 105.06188 * 118.89277 * 11 9 7 13 13 N 1.48566 * 104.59347 * 23.85440 * 12 11 9 14 14 C 1.46901 * 110.99953 * 200.95724 * 13 12 11 15 15 C 1.50692 * 109.47154 * 290.12644 * 14 13 12 16 16 C 1.34333 * 126.44405 * 89.68648 * 15 14 13 17 17 N 1.34481 * 107.66837 * 179.87670 * 16 15 14 18 18 C 1.30257 * 108.69783 * 0.39266 * 17 16 15 19 19 C 1.50709 * 125.61879 * 179.73675 * 18 17 16 20 20 C 1.53001 * 117.49576 * 8.64732 * 19 18 17 21 21 C 1.53001 * 117.49597 * 300.02586 * 19 18 17 22 22 O 1.33961 * 108.76301 * 359.75779 * 18 17 16 23 23 C 1.48564 * 104.21671 * 320.51485 * 13 12 11 24 24 H 0.96998 * 120.00539 * 174.53508 * 1 2 3 25 25 H 0.96699 * 114.00373 * 58.84503 * 10 9 7 26 26 H 1.09000 * 110.32289 * 237.79222 * 11 9 7 27 27 H 1.09001 * 110.32243 * 359.97438 * 11 9 7 28 28 H 1.08997 * 110.40834 * 142.62720 * 12 11 9 29 29 H 1.08995 * 110.41533 * 265.07329 * 12 11 9 30 30 H 1.09005 * 109.46899 * 50.12243 * 14 13 12 31 31 H 1.08998 * 109.46958 * 170.12013 * 14 13 12 32 32 H 1.07998 * 126.16864 * 0.02562 * 16 15 14 33 33 H 1.08993 * 115.54721 * 154.35600 * 19 18 17 34 34 H 1.09002 * 117.49956 * 359.97438 * 20 19 18 35 35 H 1.08992 * 117.49840 * 145.02204 * 20 19 18 36 36 H 1.08994 * 117.49607 * 214.98000 * 21 19 18 37 37 H 1.09001 * 117.49891 * 359.97438 * 21 19 18 38 38 H 1.09004 * 110.40993 * 280.70135 * 23 13 12 39 39 H 1.09005 * 110.40578 * 158.26390 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 -1.2125 6 1 3.1029 1.6963 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0776 -1.1981 -0.1214 9 6 1.2605 -2.4936 0.1713 10 8 0.5471 -2.4970 1.4094 11 6 0.2898 -2.7139 -1.0071 12 6 0.7653 -4.0195 -1.6799 13 7 1.4951 -4.7476 -0.6100 14 6 2.4145 -5.7405 -1.1818 15 6 1.6211 -6.8673 -1.7913 16 6 1.1757 -6.9364 -3.0568 17 7 0.5178 -8.1011 -3.1950 18 6 0.5434 -8.7328 -2.0561 19 6 -0.0850 -10.0751 -1.7827 20 6 -0.6394 -10.8522 -2.9783 21 6 -1.5972 -10.2002 -1.9790 22 8 1.2200 -7.9926 -1.1679 23 6 2.2410 -3.6845 0.1114 24 1 -0.4851 -0.8362 -0.0800 25 1 -0.0950 -1.7792 1.4954 26 1 -0.7307 -2.8266 -0.6410 27 1 0.3511 -1.8820 -1.7088 28 1 -0.0888 -4.6035 -2.0225 29 1 1.4333 -3.7970 -2.5119 30 1 3.0258 -5.2688 -1.9512 31 1 3.0592 -6.1336 -0.3958 32 1 1.3218 -6.1919 -3.8254 33 1 0.3669 -10.6497 -0.9742 34 1 -0.5501 -10.3925 -3.9626 35 1 -0.5523 -11.9384 -2.9566 36 1 -2.1401 -10.8575 -1.2999 37 1 -2.1376 -9.3117 -2.3055 38 1 3.1399 -3.4096 -0.4404 39 1 2.4979 -4.0163 1.1174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600167634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:26 Heat of formation + Delta-G solvation = -14.633806 kcal Electronic energy + Delta-G solvation = -21636.844440 eV Core-core repulsion = 18353.165617 eV Total energy + Delta-G solvation = -3283.678822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.41104 -40.42968 -38.26911 -37.24018 -35.67507 -34.29770 -33.12792 -30.58981 -29.73385 -27.19888 -25.92272 -24.92157 -23.36788 -22.91540 -22.06429 -21.61188 -21.38132 -19.86569 -18.38200 -17.90919 -17.35385 -16.70117 -16.21938 -15.98127 -15.74193 -15.63027 -15.51405 -15.23175 -14.88127 -14.30269 -13.93171 -13.46987 -13.35114 -13.16701 -12.86397 -12.69299 -12.60105 -12.42980 -12.41340 -12.33818 -12.07667 -11.94379 -11.80697 -11.61675 -11.52272 -11.15302 -10.64767 -10.15449 -9.77451 -9.49798 -8.63478 -6.47623 0.30048 1.46809 1.54879 1.56746 1.59976 1.80634 2.52814 2.84075 2.93505 3.01751 3.04379 3.59515 3.71042 3.76005 3.82715 3.85501 3.95752 4.00758 4.06987 4.24673 4.28417 4.34942 4.51177 4.65841 4.66402 4.74592 4.87381 4.88832 4.92236 4.97309 5.05776 5.14190 5.22682 5.26806 5.28379 5.51868 5.87852 5.97145 6.08574 6.50470 6.63994 7.04188 7.32388 8.68341 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041269 B = 0.003526 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.311929 B = 7938.110145 C = 8031.924686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 1.112 2.888 4 H -0.285 1.285 5 H -0.270 1.270 6 H -0.276 1.276 7 C -0.633 4.633 8 H 0.054 0.946 9 C 0.217 3.783 10 O -0.594 6.594 11 C -0.135 4.135 12 C 0.050 3.950 13 N -0.520 5.520 14 C 0.126 3.874 15 C -0.037 4.037 16 C -0.041 4.041 17 N -0.502 5.502 18 C 0.212 3.788 19 C -0.100 4.100 20 C -0.132 4.132 21 C -0.151 4.151 22 O -0.207 6.207 23 C 0.068 3.932 24 H 0.267 0.733 25 H 0.364 0.636 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.197 0.803 33 H 0.153 0.847 34 H 0.094 0.906 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.754 -18.090 -5.865 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.213 4.213 3 Si 0.935 3.065 4 H -0.210 1.210 5 H -0.195 1.195 6 H -0.201 1.201 7 C -0.671 4.671 8 H 0.072 0.928 9 C 0.177 3.823 10 O -0.401 6.401 11 C -0.174 4.174 12 C -0.078 4.078 13 N -0.244 5.244 14 C -0.002 4.002 15 C -0.090 4.090 16 C -0.179 4.179 17 N -0.232 5.232 18 C 0.006 3.994 19 C -0.119 4.119 20 C -0.169 4.169 21 C -0.188 4.188 22 O -0.094 6.094 23 C -0.059 4.059 24 H 0.079 0.921 25 H 0.211 0.789 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.214 0.786 33 H 0.170 0.830 34 H 0.112 0.888 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.313 -17.553 -5.832 18.543 hybrid contribution 0.550 -0.018 -0.024 0.551 sum 1.863 -17.571 -5.856 18.615 Atomic orbital electron populations 1.70969 1.07631 1.31132 1.47174 1.27150 0.96547 1.06051 0.91526 0.82981 0.74226 0.71597 0.77744 1.21001 1.19489 1.20109 1.22769 0.95604 0.93329 1.55365 0.92806 1.19758 0.88614 0.93275 0.80627 1.86274 1.57840 1.54540 1.41403 1.22988 0.98549 0.96368 0.99481 1.22980 0.98245 0.93508 0.93078 1.65370 1.24350 1.12371 1.22356 1.20672 0.91828 0.87633 1.00024 1.23367 1.04188 0.88530 0.92888 1.23333 1.00696 0.96875 0.97042 1.70350 1.21083 1.06824 1.24915 1.25912 0.94921 0.96172 0.82416 1.20411 0.97894 0.87754 1.05840 1.23167 0.99721 1.00578 0.93465 1.23211 0.89187 1.03394 1.03054 1.84359 1.55723 1.27476 1.41856 1.22835 0.94994 0.89636 0.98463 0.92096 0.78868 0.94036 0.92709 0.90910 0.92404 0.88895 0.87949 0.78587 0.82961 0.88759 0.84440 0.84707 0.89927 0.91926 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.56 12.58 21.45 0.27 -52.29 16 2 C -0.01 -0.69 5.06 84.66 0.43 -0.26 16 3 Si 1.11 47.70 29.91 68.60 2.05 49.75 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.63 -33.82 8.05 25.60 0.21 -33.62 16 8 H 0.05 2.83 7.58 -2.91 -0.02 2.80 16 9 C 0.22 10.76 1.03 -10.65 -0.01 10.75 16 10 O -0.59 -31.71 12.95 -148.98 -1.93 -33.64 16 11 C -0.13 -6.23 4.65 31.49 0.15 -6.09 16 12 C 0.05 1.86 5.69 86.45 0.49 2.35 16 13 N -0.52 -19.38 5.36 -886.04 -4.75 -24.13 16 14 C 0.13 3.69 5.36 85.55 0.46 4.14 16 15 C -0.04 -1.10 6.51 24.79 0.16 -0.94 16 16 C -0.04 -1.17 11.25 83.39 0.94 -0.24 16 17 N -0.50 -14.98 10.84 -303.82 -3.29 -18.28 16 18 C 0.21 5.90 7.89 88.34 0.70 6.59 16 19 C -0.10 -1.86 6.33 -11.54 -0.07 -1.93 16 20 C -0.13 -1.86 10.13 30.60 0.31 -1.55 16 21 C -0.15 -2.30 10.23 30.60 0.31 -1.98 16 22 O -0.21 -6.51 10.77 -3.66 -0.04 -6.55 16 23 C 0.07 2.84 5.76 86.45 0.50 3.34 16 24 H 0.27 14.95 4.51 -92.71 -0.42 14.53 16 25 H 0.36 19.62 6.83 -74.06 -0.51 19.11 16 26 H 0.04 1.98 7.69 -2.39 -0.02 1.96 16 27 H 0.05 2.71 7.13 -2.39 -0.02 2.70 16 28 H 0.07 2.64 7.94 -2.39 -0.02 2.62 16 29 H 0.06 1.96 7.82 -2.39 -0.02 1.94 16 30 H 0.09 2.32 7.88 -2.38 -0.02 2.30 16 31 H 0.10 2.75 8.13 -2.39 -0.02 2.73 16 32 H 0.20 4.75 8.06 -2.91 -0.02 4.73 16 33 H 0.15 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.09 1.66 7.88 -2.39 -0.02 1.64 16 35 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 2.45 7.55 -2.38 -0.02 2.43 16 39 H 0.07 3.07 8.08 -2.38 -0.02 3.05 16 Total: -1.00 -65.97 321.33 -2.22 -68.19 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: 0.91 Total: 36.37 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 4.57 Total: -19.42 kcal Atomic # 7 Polarization: -86.92 SS G_CDS: -7.78 Total: -94.69 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -1.97 Total: -40.20 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.05 Total: 49.75 kcal Total: -65.97 -2.22 -68.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600167634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.552 kcal (2) G-P(sol) polarization free energy of solvation -65.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds