Wall clock time and date at job start Tue Mar 31 2020 00:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99973 * 2 1 4 4 H 1.48500 * 109.47163 * 270.00223 * 3 2 1 5 5 H 1.48502 * 109.47114 * 29.99690 * 3 2 1 6 6 H 1.48502 * 109.47427 * 150.00003 * 3 2 1 7 7 C 1.37882 * 120.00690 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00477 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99448 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.76659 * 56.79970 * 9 7 2 11 11 C 1.55138 * 110.70453 * 293.60045 * 9 7 2 12 12 C 1.54915 * 101.64918 * 205.96503 * 11 9 7 13 13 N 1.47846 * 104.79538 * 37.06908 * 12 11 9 14 14 C 1.46901 * 110.99547 * 213.63497 * 13 12 11 15 15 C 1.50698 * 109.46997 * 69.87578 * 14 13 12 16 16 C 1.34332 * 126.44380 * 90.02452 * 15 14 13 17 17 N 1.34472 * 107.66788 * 179.97438 * 16 15 14 18 18 C 1.30262 * 108.70145 * 359.97438 * 17 16 15 19 19 C 1.50702 * 125.61683 * 180.02562 * 18 17 16 20 20 C 1.52998 * 117.49885 * 8.60702 * 19 18 17 21 21 C 1.53002 * 117.50331 * 299.98012 * 19 18 17 22 22 O 1.33960 * 108.75866 * 359.73526 * 18 17 16 23 23 C 1.47437 * 108.56923 * 335.90424 * 13 12 11 24 24 H 0.96997 * 120.00710 * 0.02562 * 1 2 3 25 25 H 0.96708 * 113.99729 * 303.19929 * 10 9 7 26 26 H 1.08995 * 110.99472 * 87.87217 * 11 9 7 27 27 H 1.09001 * 110.98913 * 324.05046 * 11 9 7 28 28 H 1.08995 * 110.37089 * 278.23358 * 12 11 9 29 29 H 1.09000 * 110.37010 * 155.89502 * 12 11 9 30 30 H 1.08999 * 109.46867 * 189.87222 * 14 13 12 31 31 H 1.09001 * 109.47421 * 309.87163 * 14 13 12 32 32 H 1.07992 * 126.16502 * 359.97438 * 16 15 14 33 33 H 1.09000 * 115.54603 * 154.30752 * 19 18 17 34 34 H 1.08998 * 117.50026 * 359.97438 * 20 19 18 35 35 H 1.08999 * 117.50236 * 145.01961 * 20 19 18 36 36 H 1.08994 * 117.49514 * 214.97755 * 21 19 18 37 37 H 1.08997 * 117.49356 * 359.97438 * 21 19 18 38 38 H 1.08998 * 109.89349 * 120.39614 * 23 13 12 39 39 H 1.08999 * 109.89127 * 241.58677 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.3646 -2.5724 -1.1179 11 6 0.4732 -2.6834 1.3301 12 6 0.3729 -4.2265 1.4225 13 7 1.6619 -4.7210 0.8937 14 6 1.4857 -5.9953 0.1844 15 6 0.7339 -5.7558 -1.0995 16 6 1.2708 -5.4704 -2.2973 17 7 0.2612 -5.3320 -3.1746 18 6 -0.8651 -5.5243 -2.5490 19 6 -2.2364 -5.4601 -3.1706 20 6 -2.3167 -5.3437 -4.6941 21 6 -2.6586 -4.1385 -3.8157 22 8 -0.6030 -5.7947 -1.2634 23 6 2.2285 -3.6934 0.0012 24 1 -0.4851 0.8400 -0.0004 25 1 -0.2704 -1.8445 -1.1647 26 1 -0.5164 -2.2307 1.2695 27 1 1.0357 -2.2776 2.1710 28 1 -0.4529 -4.5903 0.8111 29 1 0.2440 -4.5369 2.4594 30 1 2.4623 -6.4237 -0.0410 31 1 0.9223 -6.6857 0.8121 32 1 2.3236 -5.3701 -2.5162 33 1 -3.0078 -6.0443 -2.6688 34 1 -1.3777 -5.3132 -5.2467 35 1 -3.1411 -5.8514 -5.1949 36 1 -3.7078 -3.8535 -3.7385 37 1 -1.9446 -3.3153 -3.7900 38 1 3.2024 -3.3752 0.3731 39 1 2.3270 -4.0924 -1.0084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600167635.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:29 Heat of formation + Delta-G solvation = 12.700582 kcal Electronic energy + Delta-G solvation = -22955.235632 eV Core-core repulsion = 19672.742118 eV Total energy + Delta-G solvation = -3282.493514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.83059 -38.49488 -37.09925 -34.85681 -34.07600 -32.03779 -31.29999 -28.60958 -28.10842 -25.79427 -24.37822 -23.16319 -22.30712 -21.47376 -20.15231 -20.06898 -19.34871 -17.21160 -16.93839 -16.32657 -15.35845 -15.13517 -14.87725 -14.54985 -14.29891 -14.01054 -13.65250 -13.47299 -12.64016 -12.37298 -12.13095 -11.80018 -11.73239 -11.46267 -11.24259 -11.07920 -10.98958 -10.94297 -10.63405 -10.53576 -10.49894 -10.38216 -10.33991 -10.01603 -9.87795 -9.24248 -8.59947 -8.17101 -8.03976 -7.80179 -6.20123 -4.26983 1.92560 3.00439 3.15065 3.22972 3.30068 3.33401 4.00715 4.30716 4.37292 4.65601 4.84512 4.94896 5.03715 5.05974 5.21417 5.42127 5.59457 5.67784 5.70381 5.77639 5.85234 6.02101 6.13011 6.14321 6.23978 6.27007 6.34612 6.42302 6.50411 6.54175 6.82224 6.92111 7.04729 7.38096 7.47888 7.55864 7.63385 7.83494 8.15099 8.25582 8.73877 9.41249 9.56557 10.86836 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.006720 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.219373 B = 4165.680373 C = 5070.692912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.061 0.939 9 C 0.243 3.757 10 O -0.582 6.582 11 C -0.131 4.131 12 C 0.035 3.965 13 N -0.516 5.516 14 C 0.132 3.868 15 C -0.064 4.064 16 C -0.020 4.020 17 N -0.474 5.474 18 C 0.218 3.782 19 C -0.075 4.075 20 C -0.151 4.151 21 C -0.153 4.153 22 O -0.195 6.195 23 C 0.042 3.958 24 H 0.266 0.734 25 H 0.379 0.621 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.173 0.827 33 H 0.125 0.875 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.640 -10.670 -3.215 11.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.079 0.921 9 C 0.202 3.798 10 O -0.391 6.391 11 C -0.170 4.170 12 C -0.092 4.092 13 N -0.238 5.238 14 C 0.003 3.997 15 C -0.119 4.119 16 C -0.160 4.160 17 N -0.203 5.203 18 C 0.011 3.989 19 C -0.094 4.094 20 C -0.188 4.188 21 C -0.191 4.191 22 O -0.081 6.081 23 C -0.085 4.085 24 H 0.076 0.924 25 H 0.230 0.770 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.190 0.810 33 H 0.143 0.857 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.097 0.903 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.075 -11.065 -3.487 12.002 hybrid contribution -0.380 1.593 0.360 1.677 sum -3.455 -9.472 -3.127 10.556 Atomic orbital electron populations 1.69592 1.05945 1.27347 1.50974 1.24986 0.94953 0.99386 0.93787 0.86485 0.79868 0.82801 0.78194 1.20568 1.21150 1.19780 1.21603 0.93504 0.90734 1.51052 0.92116 1.19579 0.86103 0.91388 0.82713 1.86133 1.51143 1.52808 1.49003 1.23178 1.01879 0.90988 1.00929 1.23168 0.89727 0.98022 0.98328 1.64079 1.24190 1.03120 1.32385 1.21094 0.97413 0.94771 0.86456 1.24385 0.80188 1.07273 1.00024 1.22764 0.99358 1.04903 0.89013 1.70204 0.97590 1.18412 1.34131 1.24714 0.95685 1.00143 0.78335 1.19915 0.89149 1.04562 0.95812 1.23035 1.04012 1.01386 0.90360 1.23116 1.02686 0.91707 1.01550 1.84322 1.25365 1.67989 1.30440 1.23091 0.98705 0.91665 0.95011 0.92379 0.76963 0.91009 0.91947 0.93778 0.91898 0.88016 0.89914 0.80951 0.85690 0.87303 0.88034 0.87868 0.87474 0.90258 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.12 10.69 55.43 0.59 -23.53 16 2 C 0.07 1.88 5.28 -17.82 -0.09 1.78 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -14.24 8.21 -34.44 -0.28 -14.52 16 8 H 0.06 1.63 7.53 -52.49 -0.40 1.23 16 9 C 0.24 5.98 0.86 -89.95 -0.08 5.90 16 10 O -0.58 -15.03 13.01 -35.23 -0.46 -15.49 16 11 C -0.13 -3.06 5.66 -24.59 -0.14 -3.20 16 12 C 0.03 0.70 6.47 -2.29 -0.01 0.68 16 13 N -0.52 -9.78 5.41 -232.69 -1.26 -11.04 16 14 C 0.13 2.11 5.91 -4.98 -0.03 2.08 16 15 C -0.06 -1.15 5.19 -35.69 -0.19 -1.34 16 16 C -0.02 -0.38 9.93 -17.77 -0.18 -0.56 16 17 N -0.47 -9.10 10.84 -11.10 -0.12 -9.22 16 18 C 0.22 3.93 7.89 -12.94 -0.10 3.83 16 19 C -0.08 -1.05 6.33 -91.77 -0.58 -1.63 16 20 C -0.15 -1.77 10.13 -26.73 -0.27 -2.04 16 21 C -0.15 -1.99 10.24 -26.73 -0.27 -2.27 16 22 O -0.19 -3.70 9.87 5.38 0.05 -3.65 16 23 C 0.04 0.91 5.69 -2.84 -0.02 0.89 16 24 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.38 10.35 6.99 45.56 0.32 10.67 16 26 H 0.07 1.79 7.76 -51.93 -0.40 1.39 16 27 H 0.06 1.50 8.04 -51.93 -0.42 1.08 16 28 H 0.04 0.92 6.35 -51.93 -0.33 0.59 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 32 H 0.17 2.87 7.59 -52.49 -0.40 2.47 16 33 H 0.13 1.45 8.14 -51.93 -0.42 1.02 16 34 H 0.11 1.43 7.88 -51.93 -0.41 1.02 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 38 H 0.08 1.71 7.63 -51.93 -0.40 1.31 16 39 H 0.06 1.29 4.41 -51.93 -0.23 1.06 16 LS Contribution 317.92 15.07 4.79 4.79 Total: -1.00 -29.24 317.92 -8.42 -37.66 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -4.75 Total: 15.01 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -2.24 Total: -10.39 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.79 Total: -43.79 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.41 Total: -19.13 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.24 -8.42 -37.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600167635.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.358 kcal (2) G-P(sol) polarization free energy of solvation -29.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds