Wall clock time and date at job start Tue Mar 31 2020 00:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99973 * 2 1 4 4 H 1.48500 * 109.47163 * 270.00223 * 3 2 1 5 5 H 1.48502 * 109.47114 * 29.99690 * 3 2 1 6 6 H 1.48502 * 109.47427 * 150.00003 * 3 2 1 7 7 C 1.37882 * 120.00690 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00477 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99448 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.76659 * 56.79970 * 9 7 2 11 11 C 1.55138 * 110.70453 * 293.60045 * 9 7 2 12 12 C 1.54915 * 101.64918 * 205.96503 * 11 9 7 13 13 N 1.47846 * 104.79538 * 37.06908 * 12 11 9 14 14 C 1.46901 * 110.99547 * 213.63497 * 13 12 11 15 15 C 1.50698 * 109.46997 * 69.87578 * 14 13 12 16 16 C 1.34332 * 126.44380 * 90.02452 * 15 14 13 17 17 N 1.34472 * 107.66788 * 179.97438 * 16 15 14 18 18 C 1.30262 * 108.70145 * 359.97438 * 17 16 15 19 19 C 1.50702 * 125.61683 * 180.02562 * 18 17 16 20 20 C 1.52998 * 117.49885 * 8.60702 * 19 18 17 21 21 C 1.53002 * 117.50331 * 299.98012 * 19 18 17 22 22 O 1.33960 * 108.75866 * 359.73526 * 18 17 16 23 23 C 1.47437 * 108.56923 * 335.90424 * 13 12 11 24 24 H 0.96997 * 120.00710 * 0.02562 * 1 2 3 25 25 H 0.96708 * 113.99729 * 303.19929 * 10 9 7 26 26 H 1.08995 * 110.99472 * 87.87217 * 11 9 7 27 27 H 1.09001 * 110.98913 * 324.05046 * 11 9 7 28 28 H 1.08995 * 110.37089 * 278.23358 * 12 11 9 29 29 H 1.09000 * 110.37010 * 155.89502 * 12 11 9 30 30 H 1.08999 * 109.46867 * 189.87222 * 14 13 12 31 31 H 1.09001 * 109.47421 * 309.87163 * 14 13 12 32 32 H 1.07992 * 126.16502 * 359.97438 * 16 15 14 33 33 H 1.09000 * 115.54603 * 154.30752 * 19 18 17 34 34 H 1.08998 * 117.50026 * 359.97438 * 20 19 18 35 35 H 1.08999 * 117.50236 * 145.01961 * 20 19 18 36 36 H 1.08994 * 117.49514 * 214.97755 * 21 19 18 37 37 H 1.08997 * 117.49356 * 359.97438 * 21 19 18 38 38 H 1.08998 * 109.89349 * 120.39614 * 23 13 12 39 39 H 1.08999 * 109.89127 * 241.58677 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.3646 -2.5724 -1.1179 11 6 0.4732 -2.6834 1.3301 12 6 0.3729 -4.2265 1.4225 13 7 1.6619 -4.7210 0.8937 14 6 1.4857 -5.9953 0.1844 15 6 0.7339 -5.7558 -1.0995 16 6 1.2708 -5.4704 -2.2973 17 7 0.2612 -5.3320 -3.1746 18 6 -0.8651 -5.5243 -2.5490 19 6 -2.2364 -5.4601 -3.1706 20 6 -2.3167 -5.3437 -4.6941 21 6 -2.6586 -4.1385 -3.8157 22 8 -0.6030 -5.7947 -1.2634 23 6 2.2285 -3.6934 0.0012 24 1 -0.4851 0.8400 -0.0004 25 1 -0.2704 -1.8445 -1.1647 26 1 -0.5164 -2.2307 1.2695 27 1 1.0357 -2.2776 2.1710 28 1 -0.4529 -4.5903 0.8111 29 1 0.2440 -4.5369 2.4594 30 1 2.4623 -6.4237 -0.0410 31 1 0.9223 -6.6857 0.8121 32 1 2.3236 -5.3701 -2.5162 33 1 -3.0078 -6.0443 -2.6688 34 1 -1.3777 -5.3132 -5.2467 35 1 -3.1411 -5.8514 -5.1949 36 1 -3.7078 -3.8535 -3.7385 37 1 -1.9446 -3.3153 -3.7900 38 1 3.2024 -3.3752 0.3731 39 1 2.3270 -4.0924 -1.0084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600167635.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:28 Heat of formation + Delta-G solvation = -10.025220 kcal Electronic energy + Delta-G solvation = -22956.221097 eV Core-core repulsion = 19672.742118 eV Total energy + Delta-G solvation = -3283.478979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.21684 -40.18944 -38.17491 -36.67199 -35.48450 -34.09965 -32.90010 -30.24394 -29.81753 -27.44882 -25.98533 -24.58607 -23.32888 -22.89431 -21.74778 -21.47184 -21.09049 -19.14353 -18.28280 -17.79335 -16.91753 -16.84580 -16.60669 -15.86440 -15.72486 -15.63632 -15.15879 -15.03168 -14.26961 -13.95915 -13.72315 -13.48308 -13.20141 -13.15801 -12.79672 -12.66113 -12.47517 -12.36543 -12.32220 -12.24590 -12.13859 -11.88598 -11.67086 -11.53392 -11.35965 -11.13578 -10.62339 -10.05152 -9.62106 -9.29963 -8.22859 -6.37234 0.55740 1.37300 1.39622 1.48741 1.73408 1.77996 2.36454 2.94123 3.00816 3.05627 3.21118 3.76250 3.83276 3.89812 3.98209 4.01445 4.12713 4.21384 4.35261 4.39631 4.51623 4.62653 4.72242 4.76501 4.79757 4.83643 5.01151 5.05586 5.10189 5.15979 5.25559 5.26119 5.46536 5.47153 5.52162 5.80403 5.85320 6.06776 6.16358 6.66952 6.86772 7.33906 7.44959 8.81981 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.006720 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.219373 B = 4165.680373 C = 5070.692912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.029 3.971 3 Si 0.957 3.043 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.556 4.556 8 H 0.054 0.946 9 C 0.229 3.771 10 O -0.584 6.584 11 C -0.125 4.125 12 C 0.046 3.954 13 N -0.508 5.508 14 C 0.131 3.869 15 C -0.070 4.070 16 C -0.038 4.038 17 N -0.501 5.501 18 C 0.211 3.789 19 C -0.094 4.094 20 C -0.128 4.128 21 C -0.157 4.157 22 O -0.208 6.208 23 C 0.049 3.951 24 H 0.268 0.732 25 H 0.369 0.631 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.035 0.965 29 H 0.089 0.911 30 H 0.132 0.868 31 H 0.106 0.894 32 H 0.184 0.816 33 H 0.152 0.848 34 H 0.090 0.910 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 -11.722 -3.115 12.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.171 4.171 3 Si 0.783 3.217 4 H -0.206 1.206 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.594 4.594 8 H 0.072 0.928 9 C 0.189 3.811 10 O -0.392 6.392 11 C -0.164 4.164 12 C -0.081 4.081 13 N -0.230 5.230 14 C 0.002 3.998 15 C -0.124 4.124 16 C -0.177 4.177 17 N -0.230 5.230 18 C 0.004 3.996 19 C -0.113 4.113 20 C -0.165 4.165 21 C -0.195 4.195 22 O -0.095 6.095 23 C -0.078 4.078 24 H 0.077 0.923 25 H 0.218 0.782 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.107 0.893 30 H 0.150 0.850 31 H 0.124 0.876 32 H 0.201 0.799 33 H 0.170 0.830 34 H 0.109 0.891 35 H 0.159 0.841 36 H 0.150 0.850 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.367 -12.136 -3.384 13.041 hybrid contribution -0.299 1.925 0.291 1.970 sum -3.666 -10.211 -3.093 11.281 Atomic orbital electron populations 1.69683 1.06833 1.27971 1.50945 1.25663 0.95761 1.02189 0.93447 0.85574 0.78851 0.79271 0.78002 1.20590 1.20612 1.19370 1.21902 0.93479 0.92280 1.51738 0.92769 1.19794 0.86486 0.92048 0.82779 1.86147 1.51065 1.52110 1.49863 1.22984 1.00035 0.93548 0.99873 1.23062 0.89960 0.95312 0.99761 1.64074 1.23330 1.03432 1.32180 1.21384 0.99212 0.93423 0.85780 1.24693 0.80033 1.07130 1.00580 1.23077 0.99968 1.05222 0.89466 1.70202 0.98330 1.19562 1.34880 1.25606 0.97003 0.98851 0.78096 1.20333 0.87923 1.05637 0.97412 1.23122 1.04401 1.00007 0.88920 1.23109 1.03307 0.90679 1.02377 1.84323 1.25894 1.68302 1.30981 1.22935 0.97871 0.91282 0.95713 0.92301 0.78219 0.93397 0.93061 0.94695 0.89303 0.84994 0.87590 0.79895 0.83020 0.89124 0.84071 0.84973 0.91157 0.90480 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.84 10.69 21.45 0.23 -49.61 16 2 C 0.03 1.57 5.28 84.66 0.45 2.02 16 3 Si 0.96 43.00 29.54 68.60 2.03 45.03 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.56 -30.21 8.21 25.60 0.21 -30.00 16 8 H 0.05 2.94 7.53 -2.91 -0.02 2.91 16 9 C 0.23 11.41 0.86 -10.36 -0.01 11.40 16 10 O -0.58 -30.90 13.01 -148.98 -1.94 -32.84 16 11 C -0.13 -5.91 5.66 31.98 0.18 -5.73 16 12 C 0.05 1.80 6.47 86.78 0.56 2.37 16 13 N -0.51 -18.39 5.41 -890.10 -4.82 -23.21 16 14 C 0.13 3.84 5.91 85.56 0.51 4.35 16 15 C -0.07 -2.45 5.19 24.79 0.13 -2.32 16 16 C -0.04 -1.40 9.93 83.40 0.83 -0.57 16 17 N -0.50 -19.32 10.84 -303.84 -3.29 -22.61 16 18 C 0.21 7.56 7.89 88.34 0.70 8.25 16 19 C -0.09 -2.50 6.33 -11.54 -0.07 -2.57 16 20 C -0.13 -2.76 10.13 30.60 0.31 -2.45 16 21 C -0.16 -3.97 10.24 30.60 0.31 -3.65 16 22 O -0.21 -7.76 9.87 -3.65 -0.04 -7.80 16 23 C 0.05 2.10 5.69 86.65 0.49 2.59 16 24 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 25 H 0.37 20.83 6.99 -74.05 -0.52 20.31 16 26 H 0.05 2.44 7.76 -2.39 -0.02 2.42 16 27 H 0.05 2.48 8.04 -2.39 -0.02 2.46 16 28 H 0.03 1.43 6.35 -2.39 -0.02 1.41 16 29 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.11 2.67 8.08 -2.39 -0.02 2.65 16 32 H 0.18 6.04 7.59 -2.91 -0.02 6.02 16 33 H 0.15 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.09 2.32 7.88 -2.39 -0.02 2.31 16 35 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.08 3.29 7.63 -2.39 -0.02 3.27 16 39 H 0.06 2.63 4.41 -2.39 -0.01 2.62 16 Total: -1.00 -63.73 317.92 -2.68 -66.41 By element: Atomic # 1 Polarization: 40.39 SS G_CDS: 0.55 Total: 40.94 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 4.59 Total: -16.32 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -7.88 Total: -95.43 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -1.97 Total: -40.63 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -63.73 -2.68 -66.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600167635.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.385 kcal (2) G-P(sol) polarization free energy of solvation -63.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds