Wall clock time and date at job start Tue Mar 31 2020 00:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 119.99853 * 2 1 4 4 H 1.48501 * 109.47126 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46832 * 299.99739 * 3 2 1 6 6 H 1.48496 * 109.46942 * 60.00179 * 3 2 1 7 7 C 1.37872 * 120.00564 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00706 * 179.97438 * 7 2 1 9 9 C 1.50711 * 119.99849 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47057 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46860 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47234 * 179.97438 * 11 10 9 13 13 C 1.46902 * 110.99800 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46577 * 179.97438 * 13 12 11 15 15 C 1.38193 * 119.53852 * 95.00036 * 14 13 12 16 16 C 1.38951 * 118.92019 * 179.97438 * 15 14 13 17 17 C 1.39319 * 118.55966 * 359.95599 * 16 15 14 18 18 C 1.38405 * 119.04588 * 0.10625 * 17 16 15 19 19 N 1.31890 * 119.53750 * 274.72218 * 14 13 12 20 20 O 1.35943 * 120.73336 * 180.19234 * 17 16 15 21 21 C 1.43241 * 116.54789 * 342.76287 * 20 17 16 22 22 C 1.53451 * 108.36405 * 46.19346 * 21 20 17 23 23 O 1.35633 * 120.40367 * 179.83342 * 16 15 14 24 24 H 0.96994 * 120.00350 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47095 * 59.99919 * 9 7 2 26 26 H 1.09004 * 109.46725 * 300.00279 * 9 7 2 27 27 H 1.09002 * 109.47344 * 59.99937 * 10 9 7 28 28 H 1.09001 * 109.46976 * 299.99680 * 10 9 7 29 29 H 1.09002 * 109.47089 * 59.99910 * 11 10 9 30 30 H 1.09001 * 109.47170 * 299.99690 * 11 10 9 31 31 H 1.00896 * 110.99866 * 56.04214 * 12 11 10 32 32 H 1.09000 * 109.46894 * 60.00165 * 13 12 11 33 33 H 1.09000 * 109.47263 * 299.99731 * 13 12 11 34 34 H 1.08010 * 120.53940 * 359.96134 * 15 14 13 35 35 H 1.08001 * 119.71778 * 179.91011 * 18 17 16 36 36 H 1.09003 * 109.68921 * 286.47783 * 21 20 17 37 37 H 1.09003 * 109.71742 * 165.93175 * 21 20 17 38 38 H 1.08998 * 109.69719 * 180.58477 * 22 21 20 39 39 H 1.08996 * 109.72223 * 60.01850 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9870 -0.0020 12 7 2.4351 -6.1036 -0.0024 13 6 1.7348 -7.3950 -0.0035 14 6 2.7444 -8.5138 -0.0045 15 6 3.1231 -9.0909 1.1927 16 6 4.0545 -10.1219 1.1768 17 6 4.5703 -10.5346 -0.0498 18 6 4.1413 -9.9050 -1.2053 19 7 3.2501 -8.9323 -1.1485 20 8 5.4809 -11.5417 -0.1170 21 6 6.1516 -11.8809 1.1024 22 6 5.1041 -11.9770 2.2197 23 8 4.4500 -10.7075 2.3345 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5564 -0.8920 26 1 0.6241 -2.5575 0.8880 27 1 2.8714 -3.6046 0.8890 28 1 2.8727 -3.6038 -0.8910 29 1 0.8542 -5.0447 -0.8923 30 1 0.8535 -5.0450 0.8877 31 1 3.0700 -6.0368 0.7790 32 1 1.1103 -7.4688 -0.8938 33 1 1.1096 -7.4700 0.8862 34 1 2.7020 -8.7460 2.1256 35 1 4.5352 -10.2153 -2.1618 36 1 6.8804 -11.1084 1.3478 37 1 6.6571 -12.8400 0.9895 38 1 5.5934 -12.2245 3.1617 39 1 4.3724 -12.7461 1.9727 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602538868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:56 Heat of formation + Delta-G solvation = -70.739787 kcal Electronic energy + Delta-G solvation = -20396.756022 eV Core-core repulsion = 17110.644263 eV Total energy + Delta-G solvation = -3286.111760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.57574 -40.12635 -38.44958 -37.67524 -35.52960 -33.62412 -33.08094 -31.90714 -30.13628 -28.53864 -26.77302 -25.17033 -24.63046 -23.73437 -22.10081 -21.59183 -19.79828 -18.89673 -18.53868 -18.35378 -16.80596 -16.77246 -16.55124 -16.38143 -15.86634 -15.72703 -15.66342 -15.49136 -15.23261 -14.76255 -14.43891 -14.22046 -14.02798 -13.44710 -13.15032 -13.11420 -12.79786 -12.65900 -12.44106 -12.21393 -12.09451 -11.77500 -11.51306 -11.37188 -11.09725 -10.65346 -10.54182 -10.14873 -9.50454 -9.32341 -8.18817 -6.29470 -0.07306 0.10900 1.40684 1.41251 1.54827 1.84434 2.11035 2.42046 2.55663 3.05916 3.14224 3.22860 3.45654 3.51975 3.83509 3.88940 3.98364 4.08058 4.26381 4.28537 4.40677 4.46156 4.53888 4.60984 4.65439 4.74508 4.76282 4.86962 5.00848 5.13163 5.23379 5.26765 5.54047 5.68628 5.77964 5.88158 6.01092 6.15006 6.28945 6.43885 6.87584 6.95898 7.39559 8.93311 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037403 B = 0.002440 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.429152 B =11474.610690 C =11598.407945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.074 3.926 12 N -0.688 5.688 13 C 0.114 3.886 14 C 0.128 3.872 15 C -0.165 4.165 16 C 0.086 3.914 17 C -0.008 4.008 18 C 0.103 3.897 19 N -0.476 5.476 20 O -0.311 6.311 21 C 0.012 3.988 22 C 0.012 3.988 23 O -0.314 6.314 24 H 0.264 0.736 25 H -0.008 1.008 26 H -0.006 1.006 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.343 0.657 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.159 0.841 35 H 0.184 0.816 36 H 0.080 0.920 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.367 -29.074 5.125 31.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.131 4.131 11 C -0.055 4.055 12 N -0.320 5.320 13 C -0.015 4.015 14 C -0.009 4.009 15 C -0.186 4.186 16 C 0.033 3.967 17 C -0.056 4.056 18 C -0.055 4.055 19 N -0.189 5.189 20 O -0.225 6.225 21 C -0.063 4.063 22 C -0.062 4.062 23 O -0.227 6.227 24 H 0.072 0.928 25 H 0.011 0.989 26 H 0.013 0.987 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.161 0.839 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.177 0.823 35 H 0.201 0.799 36 H 0.098 0.902 37 H 0.178 0.822 38 H 0.176 0.824 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.083 -28.648 3.747 30.945 hybrid contribution 0.148 0.468 1.678 1.749 sum 11.231 -28.180 5.426 30.817 Atomic orbital electron populations 1.70096 1.07743 1.27695 1.51853 1.25989 0.95812 1.03373 0.94791 0.85392 0.79021 0.78758 0.77833 1.18729 1.20340 1.20212 1.21733 0.93501 0.92490 1.50281 0.92403 1.18979 0.94416 0.92955 0.94932 1.21372 0.98059 0.93017 1.00620 1.21853 0.93779 0.89565 1.00260 1.60383 1.20210 1.00841 1.50518 1.20752 0.92708 0.85281 1.02790 1.20971 0.96595 0.95920 0.87423 1.21482 0.98408 0.97980 1.00689 1.19163 0.95838 0.96151 0.85590 1.20040 0.95954 0.94985 0.94590 1.22548 0.94334 0.90894 0.97692 1.67597 1.09833 1.11811 1.29614 1.86295 1.51882 1.48596 1.35679 1.24038 0.94089 1.05559 0.82577 1.24107 0.95973 0.82613 1.03533 1.86248 1.73693 1.36107 1.26675 0.92761 0.98948 0.98733 0.93069 0.93262 0.91714 0.94868 0.83866 0.89581 0.91549 0.82350 0.79941 0.90155 0.82181 0.82384 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.78 13.29 21.44 0.28 -57.50 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 4 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.02 1.34 4.97 29.85 0.15 1.49 16 10 C -0.09 -3.96 5.41 30.59 0.17 -3.80 16 11 C 0.07 2.59 5.69 86.30 0.49 3.09 16 12 N -0.69 -20.76 6.49 -517.90 -3.36 -24.13 16 13 C 0.11 2.90 5.99 85.56 0.51 3.41 16 14 C 0.13 3.26 6.29 42.54 0.27 3.53 16 15 C -0.16 -3.65 9.68 22.43 0.22 -3.44 16 16 C 0.09 1.85 6.52 22.70 0.15 2.00 16 17 C -0.01 -0.16 6.51 22.57 0.15 -0.02 16 18 C 0.10 2.38 11.14 84.70 0.94 3.32 16 19 N -0.48 -13.01 10.26 -183.60 -1.88 -14.90 16 20 O -0.31 -5.36 10.45 -80.97 -0.85 -6.20 16 21 C 0.01 0.11 7.25 72.13 0.52 0.63 16 22 C 0.01 0.10 7.26 72.13 0.52 0.63 16 23 O -0.31 -5.64 10.44 -77.51 -0.81 -6.45 16 24 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 25 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 26 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 27 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.34 9.65 8.72 -89.70 -0.78 8.87 16 32 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.07 1.42 8.04 -2.39 -0.02 1.40 16 34 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.18 3.33 8.06 -2.91 -0.02 3.30 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.16 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.16 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -72.56 331.55 0.46 -72.11 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.27 Total: 10.19 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 4.78 Total: -20.37 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -4.96 Total: -96.52 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -1.66 Total: -12.65 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -72.56 0.46 -72.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602538868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.367 kcal (2) G-P(sol) polarization free energy of solvation -72.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds