Wall clock time and date at job start Tue Mar 31 2020 00:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47073 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99897 * 179.97438 * 11 10 9 13 13 O 1.21588 * 119.99850 * 0.02562 * 12 11 10 14 14 N 1.34769 * 120.00175 * 179.97438 * 12 11 10 15 15 C 1.47426 * 125.64577 * 359.70257 * 14 12 11 16 16 C 1.55133 * 104.72336 * 155.81577 * 15 14 12 17 17 C 1.55153 * 101.48631 * 37.28987 * 16 15 14 18 18 H 1.09000 * 110.87549 * 82.76892 * 17 16 15 19 19 C 1.50697 * 110.72121 * 205.97337 * 17 16 15 20 20 C 1.34521 * 125.78802 * 234.68914 * 19 17 16 21 21 C 1.41382 * 106.83997 * 179.88863 * 20 19 17 22 22 C 1.34520 * 106.84068 * 0.37532 * 21 20 19 23 23 O 1.34296 * 125.79068 * 55.00381 * 19 17 16 24 24 C 1.47017 * 125.65232 * 180.02562 * 14 12 11 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 29 29 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 30 30 H 0.96991 * 120.00466 * 0.02562 * 11 10 9 31 31 H 1.09006 * 110.36390 * 274.74056 * 15 14 12 32 32 H 1.08996 * 110.37096 * 37.06320 * 15 14 12 33 33 H 1.08999 * 111.19238 * 279.18930 * 16 15 14 34 34 H 1.08999 * 110.94072 * 155.28689 * 16 15 14 35 35 H 1.08002 * 126.57967 * 0.03569 * 20 19 17 36 36 H 1.08001 * 126.57930 * 180.16892 * 21 20 19 37 37 H 1.08000 * 125.78834 * 179.79048 * 22 21 20 38 38 H 1.09007 * 109.88113 * 300.44302 * 24 14 12 39 39 H 1.09001 * 109.88227 * 61.60499 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1866 -6.0981 -0.0003 13 8 3.4025 -6.0981 -0.0007 14 7 1.5127 -7.2652 0.0008 15 6 0.0457 -7.4103 0.0087 16 6 -0.2155 -8.8097 -0.6078 17 6 0.9654 -9.6296 -0.0243 18 1 0.7367 -9.9772 0.9831 19 6 1.3036 -10.7911 -0.9230 20 6 1.3639 -12.0823 -0.5506 21 6 1.7102 -12.8251 -1.7026 22 6 1.8491 -11.9424 -2.7083 23 8 1.6016 -10.7120 -2.2301 24 6 2.1189 -8.6046 0.0010 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 2.8719 -3.6044 -0.8906 29 1 2.8719 -3.6044 0.8894 30 1 0.5428 -4.9308 0.0000 31 1 -0.3344 -7.3659 1.0293 32 1 -0.4156 -6.6348 -0.6028 33 1 -0.1676 -8.7760 -1.6962 34 1 -1.1724 -9.2104 -0.2732 35 1 1.1803 -12.4763 0.4381 36 1 1.8417 -13.8954 -1.7629 37 1 2.1142 -12.1826 -3.7273 38 1 2.7442 -8.7287 -0.8832 39 1 2.7164 -8.7409 0.9024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612155495.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:48 Heat of formation + Delta-G solvation = -18.723763 kcal Electronic energy + Delta-G solvation = -20823.340548 eV Core-core repulsion = 17539.484372 eV Total energy + Delta-G solvation = -3283.856176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.85349 -39.98092 -37.62353 -34.78482 -33.38591 -32.94005 -32.33097 -29.90156 -29.53704 -27.91072 -24.93272 -23.39670 -22.38824 -21.86128 -20.96779 -20.23599 -19.66669 -18.07394 -17.46835 -16.49743 -16.31285 -16.06787 -15.39060 -14.81876 -14.70935 -14.44365 -13.83584 -13.64774 -13.48534 -13.09046 -13.04453 -12.80346 -12.69969 -12.34548 -12.23353 -11.89172 -11.55833 -11.20848 -11.11171 -10.99758 -10.63211 -10.29174 -10.17251 -9.91749 -9.54112 -9.26058 -8.76091 -8.67870 -8.43761 -8.16444 -6.07480 -4.09994 1.45256 2.34120 2.66103 2.91873 3.33000 3.36460 3.40312 3.57504 4.19605 4.24104 4.28358 4.41592 4.58505 4.71083 4.78086 4.93094 5.03278 5.11207 5.29547 5.42549 5.46500 5.54079 5.62044 5.69551 5.73140 5.83592 5.87246 6.18627 6.22627 6.42150 6.42630 6.79261 6.88931 7.02312 7.28436 7.57877 7.65158 7.91643 8.26955 8.39835 8.94097 9.00707 9.54519 11.04207 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.047497 B = 0.002718 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.369078 B =10298.867873 C =10475.699661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.140 3.860 11 N -0.736 5.736 12 C 0.717 3.283 13 O -0.594 6.594 14 N -0.643 5.643 15 C 0.098 3.902 16 C -0.124 4.124 17 C -0.022 4.022 18 H 0.116 0.884 19 C 0.002 3.998 20 C -0.208 4.208 21 C -0.216 4.216 22 C -0.040 4.040 23 O -0.170 6.170 24 C 0.135 3.865 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.393 0.607 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.202 0.798 38 H 0.069 0.931 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.940 -25.233 -1.697 25.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.213 1.213 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.389 5.389 12 C 0.419 3.581 13 O -0.472 6.472 14 N -0.383 5.383 15 C -0.025 4.025 16 C -0.162 4.162 17 C -0.040 4.040 18 H 0.134 0.866 19 C -0.048 4.048 20 C -0.227 4.227 21 C -0.235 4.235 22 C -0.108 4.108 23 O -0.066 6.066 24 C 0.012 3.988 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.226 0.774 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.219 0.781 38 H 0.088 0.912 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.111 -24.697 -1.858 24.856 hybrid contribution -0.078 0.552 0.008 0.557 sum -2.189 -24.145 -1.849 24.315 Atomic orbital electron populations 1.69949 1.06086 1.26948 1.50411 1.24997 0.94902 0.99394 0.95011 0.86561 0.79502 0.82612 0.78793 1.21270 1.20101 1.20110 1.21017 0.93249 0.90352 1.51329 0.92253 1.19317 0.94239 0.91037 0.97782 1.21615 0.95677 0.80312 1.00700 1.45547 1.09880 1.05082 1.78425 1.15549 0.84968 0.79487 0.78072 1.90897 1.11542 1.86055 1.58734 1.47536 1.06341 1.04575 1.79841 1.22339 0.81579 0.97541 1.01036 1.22908 0.97697 0.93901 1.01700 1.20842 0.96159 0.90238 0.96809 0.86625 1.22013 1.04551 0.95913 0.82348 1.21601 1.08260 0.92361 1.00451 1.21829 1.07790 1.00818 0.93037 1.24068 1.05422 0.81103 1.00213 1.84033 1.67381 1.31808 1.23399 1.21681 0.94408 0.80016 1.02737 0.92818 0.95979 0.95991 0.92754 0.92724 0.77366 0.91039 0.90256 0.89845 0.89198 0.83409 0.83489 0.78142 0.91239 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.53 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.35 5.09 -27.89 -0.14 0.21 16 10 C 0.14 3.10 5.61 -4.04 -0.02 3.07 16 11 N -0.74 -13.77 5.52 -65.23 -0.36 -14.13 16 12 C 0.72 13.57 8.49 -86.92 -0.74 12.83 16 13 O -0.59 -13.61 16.67 5.29 0.09 -13.52 16 14 N -0.64 -9.15 3.32 -176.09 -0.59 -9.74 16 15 C 0.10 0.99 6.59 -2.41 -0.02 0.98 16 16 C -0.12 -1.01 6.53 -24.46 -0.16 -1.17 16 17 C -0.02 -0.19 3.39 -89.94 -0.31 -0.49 16 18 H 0.12 0.76 8.13 -51.93 -0.42 0.34 16 19 C 0.00 0.02 5.80 -35.62 -0.21 -0.18 16 20 C -0.21 -1.80 10.80 -39.70 -0.43 -2.23 16 21 C -0.22 -1.74 10.91 -39.70 -0.43 -2.17 16 22 C -0.04 -0.33 12.09 29.42 0.36 0.02 16 23 O -0.17 -1.84 10.47 5.71 0.06 -1.78 16 24 C 0.14 1.66 6.45 -3.07 -0.02 1.64 16 25 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.39 6.38 6.95 -40.82 -0.28 6.10 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.79 7.29 -51.93 -0.38 0.41 16 33 H 0.08 0.77 7.96 -51.93 -0.41 0.36 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.20 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.07 0.97 7.74 -51.93 -0.40 0.57 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 331.73 15.07 5.00 5.00 Total: -1.00 -34.20 331.73 -8.28 -42.48 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.67 Total: 1.57 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.53 Total: -0.87 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: -0.21 Total: -49.41 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.15 Total: -15.30 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.20 -8.28 -42.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612155495.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.753 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds