Wall clock time and date at job start Tue Mar 31 2020 00:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47073 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99897 * 179.97438 * 11 10 9 13 13 O 1.21588 * 119.99850 * 0.02562 * 12 11 10 14 14 N 1.34769 * 120.00175 * 179.97438 * 12 11 10 15 15 C 1.47426 * 125.64577 * 359.70257 * 14 12 11 16 16 C 1.55133 * 104.72336 * 155.81577 * 15 14 12 17 17 C 1.55153 * 101.48631 * 37.28987 * 16 15 14 18 18 H 1.09000 * 110.87549 * 82.76892 * 17 16 15 19 19 C 1.50697 * 110.72121 * 205.97337 * 17 16 15 20 20 C 1.34521 * 125.78802 * 234.68914 * 19 17 16 21 21 C 1.41382 * 106.83997 * 179.88863 * 20 19 17 22 22 C 1.34520 * 106.84068 * 0.37532 * 21 20 19 23 23 O 1.34296 * 125.79068 * 55.00381 * 19 17 16 24 24 C 1.47017 * 125.65232 * 180.02562 * 14 12 11 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 29 29 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 30 30 H 0.96991 * 120.00466 * 0.02562 * 11 10 9 31 31 H 1.09006 * 110.36390 * 274.74056 * 15 14 12 32 32 H 1.08996 * 110.37096 * 37.06320 * 15 14 12 33 33 H 1.08999 * 111.19238 * 279.18930 * 16 15 14 34 34 H 1.08999 * 110.94072 * 155.28689 * 16 15 14 35 35 H 1.08002 * 126.57967 * 0.03569 * 20 19 17 36 36 H 1.08001 * 126.57930 * 180.16892 * 21 20 19 37 37 H 1.08000 * 125.78834 * 179.79048 * 22 21 20 38 38 H 1.09007 * 109.88113 * 300.44302 * 24 14 12 39 39 H 1.09001 * 109.88227 * 61.60499 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1866 -6.0981 -0.0003 13 8 3.4025 -6.0981 -0.0007 14 7 1.5127 -7.2652 0.0008 15 6 0.0457 -7.4103 0.0087 16 6 -0.2155 -8.8097 -0.6078 17 6 0.9654 -9.6296 -0.0243 18 1 0.7367 -9.9772 0.9831 19 6 1.3036 -10.7911 -0.9230 20 6 1.3639 -12.0823 -0.5506 21 6 1.7102 -12.8251 -1.7026 22 6 1.8491 -11.9424 -2.7083 23 8 1.6016 -10.7120 -2.2301 24 6 2.1189 -8.6046 0.0010 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 2.8719 -3.6044 -0.8906 29 1 2.8719 -3.6044 0.8894 30 1 0.5428 -4.9308 0.0000 31 1 -0.3344 -7.3659 1.0293 32 1 -0.4156 -6.6348 -0.6028 33 1 -0.1676 -8.7760 -1.6962 34 1 -1.1724 -9.2104 -0.2732 35 1 1.1803 -12.4763 0.4381 36 1 1.8417 -13.8954 -1.7629 37 1 2.1142 -12.1826 -3.7273 38 1 2.7442 -8.7287 -0.8832 39 1 2.7164 -8.7409 0.9024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612155495.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:47 Heat of formation + Delta-G solvation = -41.036163 kcal Electronic energy + Delta-G solvation = -20824.308087 eV Core-core repulsion = 17539.484372 eV Total energy + Delta-G solvation = -3284.823714 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.50967 -41.28693 -38.79831 -36.58849 -34.88142 -34.07210 -33.42210 -31.37020 -30.68667 -28.84346 -26.74165 -24.65713 -23.14594 -22.83343 -22.49804 -21.14565 -20.85048 -19.26781 -18.49582 -18.23390 -17.42087 -16.90116 -16.83241 -16.50931 -16.11948 -15.58090 -15.08640 -15.05044 -14.65523 -14.29622 -14.01049 -13.75617 -13.67683 -13.49686 -13.33846 -13.21791 -12.91613 -12.61894 -12.52783 -12.30390 -12.23936 -11.87575 -11.68260 -11.51755 -11.24342 -10.80568 -10.59987 -10.22557 -9.54877 -9.33804 -8.23737 -6.34077 0.79119 1.41916 1.44841 1.51288 1.56255 1.75191 2.06309 2.15639 2.41267 3.05400 3.10925 3.51158 3.55330 3.60829 4.13428 4.17968 4.23804 4.28411 4.41669 4.45334 4.49748 4.60290 4.71788 4.78617 4.84380 4.92204 4.97660 5.04736 5.15831 5.20837 5.27797 5.31256 5.50191 5.58213 5.65369 5.78627 5.98891 6.17019 6.25516 6.78344 6.95012 7.34948 7.50650 8.88062 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.047497 B = 0.002718 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.369078 B =10298.867873 C =10475.699661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.280 1.280 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.160 3.840 11 N -0.730 5.730 12 C 0.713 3.287 13 O -0.641 6.641 14 N -0.638 5.638 15 C 0.090 3.910 16 C -0.113 4.113 17 C -0.007 4.007 18 H 0.146 0.854 19 C -0.021 4.021 20 C -0.207 4.207 21 C -0.225 4.225 22 C -0.049 4.049 23 O -0.197 6.197 24 C 0.131 3.869 25 H 0.266 0.734 26 H 0.010 0.990 27 H 0.008 0.992 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.406 0.594 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.123 0.877 35 H 0.168 0.832 36 H 0.168 0.832 37 H 0.228 0.772 38 H 0.045 0.955 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.754 -26.448 -1.307 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.205 1.205 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.011 4.011 10 C 0.036 3.964 11 N -0.385 5.385 12 C 0.414 3.586 13 O -0.523 6.523 14 N -0.376 5.376 15 C -0.032 4.032 16 C -0.151 4.151 17 C -0.026 4.026 18 H 0.163 0.837 19 C -0.071 4.071 20 C -0.226 4.226 21 C -0.244 4.244 22 C -0.116 4.116 23 O -0.094 6.094 24 C 0.007 3.993 25 H 0.075 0.925 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.242 0.758 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.142 0.858 35 H 0.186 0.814 36 H 0.186 0.814 37 H 0.245 0.755 38 H 0.063 0.937 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.978 -25.965 -1.466 26.177 hybrid contribution 0.156 0.815 -0.145 0.843 sum -2.822 -25.150 -1.612 25.359 Atomic orbital electron populations 1.70050 1.07501 1.28091 1.50877 1.25869 0.95826 1.03060 0.94359 0.85491 0.78306 0.78089 0.79117 1.20478 1.19319 1.19425 1.21425 0.93596 0.91877 1.51744 0.92335 1.19110 0.94148 0.91499 0.96385 1.21112 0.94722 0.80992 0.99593 1.45222 1.10341 1.04201 1.78689 1.15671 0.84511 0.80460 0.77920 1.90854 1.13717 1.86945 1.60797 1.47549 1.08407 1.03766 1.77919 1.22692 0.78706 0.98992 1.02764 1.22893 0.99035 0.92400 1.00790 1.20856 0.94380 0.89024 0.98337 0.83654 1.22215 1.06013 0.96588 0.82272 1.21956 1.07082 0.92047 1.01507 1.22193 1.07507 1.01938 0.92788 1.24743 1.04782 0.80447 1.01649 1.84019 1.68008 1.33185 1.24194 1.21826 0.95923 0.80011 1.01518 0.92491 0.97154 0.97333 0.94000 0.93721 0.75837 0.88686 0.90146 0.91217 0.85838 0.81425 0.81423 0.75548 0.93671 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.48 13.29 21.45 0.28 -54.20 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.97 43.98 29.54 68.60 2.03 46.00 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.55 -31.10 9.11 25.60 0.23 -30.86 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.34 5.09 29.85 0.15 1.50 16 10 C 0.16 7.27 5.61 86.38 0.48 7.75 16 11 N -0.73 -27.62 5.52 -478.53 -2.64 -30.26 16 12 C 0.71 27.37 8.49 179.05 1.52 28.89 16 13 O -0.64 -30.31 16.67 -3.99 -0.07 -30.38 16 14 N -0.64 -17.93 3.32 -829.31 -2.76 -20.69 16 15 C 0.09 1.65 6.59 86.93 0.57 2.22 16 16 C -0.11 -1.59 6.53 32.06 0.21 -1.38 16 17 C -0.01 -0.11 3.39 -10.35 -0.04 -0.15 16 18 H 0.15 1.39 8.13 -2.39 -0.02 1.37 16 19 C -0.02 -0.38 5.80 24.83 0.14 -0.23 16 20 C -0.21 -3.13 10.80 22.19 0.24 -2.89 16 21 C -0.23 -3.20 10.91 22.19 0.24 -2.96 16 22 C -0.05 -0.75 12.09 66.97 0.81 0.06 16 23 O -0.20 -4.14 10.47 -2.47 -0.03 -4.17 16 24 C 0.13 3.17 6.45 86.73 0.56 3.73 16 25 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 26 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.04 1.99 8.14 -2.39 -0.02 1.98 16 29 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.41 13.12 6.95 -92.71 -0.64 12.47 16 31 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.08 1.48 7.29 -2.39 -0.02 1.46 16 33 H 0.07 1.20 7.96 -2.39 -0.02 1.18 16 34 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 36 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.23 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.04 1.31 7.74 -2.38 -0.02 1.29 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -74.92 331.73 2.82 -72.10 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.40 Total: 15.01 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 5.59 Total: 6.58 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -5.11 Total: -105.15 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.09 Total: -34.54 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -74.92 2.82 -72.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612155495.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.060 kcal (2) G-P(sol) polarization free energy of solvation -74.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds