Wall clock time and date at job start Tue Mar 31 2020 00:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00189 * 2 1 4 4 H 1.48497 * 109.46986 * 239.99673 * 3 2 1 5 5 H 1.48498 * 109.46638 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47039 * 119.99644 * 3 2 1 7 7 C 1.37881 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00525 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99742 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47157 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47183 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47162 * 304.99753 * 11 10 9 13 13 N 1.46898 * 109.47058 * 64.99992 * 11 10 9 14 14 C 1.50702 * 109.47031 * 184.99575 * 11 10 9 15 15 O 1.21272 * 120.00311 * 259.99831 * 14 11 10 16 16 N 1.34782 * 119.99550 * 80.00129 * 14 11 10 17 17 C 1.46497 * 119.99756 * 179.97438 * 16 14 11 18 18 C 1.50707 * 109.47222 * 180.02562 * 17 16 14 19 19 C 1.38163 * 120.02715 * 259.98027 * 18 17 16 20 20 C 1.38243 * 120.05438 * 180.02562 * 19 18 17 21 21 C 1.38289 * 120.11362 * 359.97438 * 20 19 18 22 22 C 1.38125 * 120.05159 * 0.02562 * 21 20 19 23 23 C 1.38708 * 120.02785 * 79.99933 * 18 17 16 24 24 O 1.35899 * 120.05461 * 359.95420 * 23 18 17 25 25 H 0.96993 * 119.99484 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47950 * 59.99204 * 9 7 2 27 27 H 1.09004 * 109.47350 * 299.99183 * 9 7 2 28 28 H 1.08999 * 109.47561 * 59.99809 * 10 9 7 29 29 H 1.08996 * 109.47156 * 299.99362 * 10 9 7 30 30 H 1.00902 * 111.00064 * 296.04444 * 13 11 10 31 31 H 1.00900 * 111.00391 * 59.99643 * 13 11 10 32 32 H 0.97003 * 120.00460 * 359.97438 * 16 14 11 33 33 H 1.08996 * 109.47542 * 59.99800 * 17 16 14 34 34 H 1.09004 * 109.47088 * 299.99903 * 17 16 14 35 35 H 1.08001 * 119.97024 * 0.03662 * 19 18 17 36 36 H 1.08004 * 119.94070 * 180.02562 * 20 19 18 37 37 H 1.07993 * 119.96940 * 180.28495 * 21 20 19 38 38 H 1.08000 * 120.02364 * 180.02562 * 22 21 20 39 39 H 0.96699 * 114.00749 * 270.02413 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 1 0.7884 -5.0068 0.8433 13 7 0.7281 -5.1189 -1.2537 14 6 2.4549 -6.1298 0.1249 15 8 2.7863 -6.7536 -0.8609 16 7 2.9583 -6.4586 1.3312 17 6 3.9053 -7.5697 1.4516 18 6 4.3120 -7.7292 2.8940 19 6 5.5176 -7.2166 3.3331 20 6 5.8914 -7.3630 4.6560 21 6 5.0600 -8.0220 5.5431 22 6 3.8538 -8.5361 5.1090 23 6 3.4765 -8.3909 3.7817 24 8 2.2899 -8.8954 3.3523 25 1 -0.4849 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6242 -2.5568 0.8904 28 1 2.8720 -3.6044 0.8905 29 1 2.8719 -3.6044 -0.8895 30 1 0.0233 -4.4009 -1.3300 31 1 1.3476 -5.1033 -2.0500 32 1 2.6934 -5.9594 2.1197 33 1 4.7874 -7.3627 0.8458 34 1 3.4333 -8.4887 1.1039 35 1 6.1683 -6.7011 2.6424 36 1 6.8340 -6.9613 4.9974 37 1 5.3523 -8.1310 6.5770 38 1 3.2047 -9.0503 5.8023 39 1 1.5502 -8.2769 3.4245 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691614281.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:12 Heat of formation + Delta-G solvation = -71.149762 kcal Electronic energy + Delta-G solvation = -20922.409546 eV Core-core repulsion = 17636.280008 eV Total energy + Delta-G solvation = -3286.129538 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.36266 -39.33322 -36.89163 -35.62560 -34.82258 -32.86116 -31.58640 -30.10022 -29.89085 -27.27142 -25.62422 -23.61081 -22.89751 -21.66482 -20.73753 -19.81536 -18.57943 -17.47410 -16.42053 -16.24779 -16.22050 -15.96208 -15.17684 -14.78174 -14.57979 -14.45173 -14.17657 -13.95431 -13.32654 -13.20754 -13.06648 -12.57826 -12.44683 -12.25715 -12.14272 -11.78606 -11.61871 -11.09450 -10.92556 -10.72542 -10.69159 -10.00295 -9.96482 -9.41879 -9.27749 -9.13121 -9.00373 -8.87182 -8.45268 -8.18570 -6.10001 -4.13253 0.86346 0.99215 2.94423 3.13395 3.27229 3.32236 3.34543 3.56417 3.95884 4.38062 4.39951 4.56319 4.73366 4.98289 5.06584 5.15398 5.18784 5.26215 5.41754 5.48859 5.56982 5.63520 5.75540 5.76902 6.01955 6.15070 6.21675 6.27168 6.45332 6.50125 6.52413 6.85904 7.38259 7.42685 7.50119 7.59726 7.69625 7.86894 7.90483 8.29571 8.46465 8.92505 9.51687 11.00882 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017775 B = 0.003680 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.906600 B = 7607.281630 C = 8496.591453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.137 4.137 11 C 0.076 3.924 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.526 3.474 15 O -0.537 6.537 16 N -0.731 5.731 17 C 0.166 3.834 18 C -0.132 4.132 19 C -0.084 4.084 20 C -0.131 4.131 21 C -0.098 4.098 22 C -0.149 4.149 23 C 0.123 3.877 24 O -0.495 6.495 25 H 0.262 0.738 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.354 0.646 31 H 0.346 0.654 32 H 0.399 0.601 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.760 -15.218 10.901 20.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.177 4.177 11 C -0.039 4.039 12 H 0.113 0.887 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.412 6.412 16 N -0.384 5.384 17 C 0.043 3.957 18 C -0.132 4.132 19 C -0.103 4.103 20 C -0.149 4.149 21 C -0.117 4.117 22 C -0.168 4.168 23 C 0.078 3.922 24 O -0.305 6.305 25 H 0.072 0.928 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.169 0.831 31 H 0.159 0.841 32 H 0.233 0.767 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 7.927 -16.782 10.311 21.232 hybrid contribution 0.478 2.584 0.406 2.658 sum 8.404 -14.199 10.717 19.675 Atomic orbital electron populations 1.69936 1.06022 1.26913 1.50335 1.25008 0.94865 0.99285 0.95095 0.86643 0.79604 0.83026 0.78667 1.20213 1.21193 1.20224 1.21145 0.92986 0.90921 1.51277 0.92780 1.19097 0.93708 0.91098 0.97343 1.22383 0.99875 0.93981 1.01476 1.21466 0.94624 0.92255 0.95603 0.88656 1.58741 1.18463 1.55868 1.03204 1.20912 0.81066 0.84408 0.82357 1.90638 1.60184 1.53350 1.37067 1.46033 1.47237 1.35000 1.10177 1.20015 0.93464 0.90946 0.91281 1.20282 0.96486 1.00415 0.96066 1.21088 0.95452 0.97655 0.96094 1.21203 1.00230 1.00028 0.93438 1.21099 0.93698 0.97012 0.99869 1.21449 0.98369 1.01966 0.94974 1.18362 0.87744 0.94953 0.91136 1.84792 1.16700 1.42673 1.86341 0.92808 0.96389 0.96359 0.92585 0.92673 0.83055 0.84120 0.76663 0.90899 0.90171 0.85230 0.85526 0.85533 0.85276 0.75025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.31 9.11 -34.44 -0.31 -14.62 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 10 C -0.14 -2.66 4.78 -26.73 -0.13 -2.79 16 11 C 0.08 1.27 3.21 -68.86 -0.22 1.05 16 12 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 13 N -0.83 -14.28 8.94 -5.65 -0.05 -14.33 16 14 C 0.53 8.61 7.08 -10.98 -0.08 8.54 16 15 O -0.54 -10.56 16.25 5.56 0.09 -10.47 16 16 N -0.73 -9.30 5.55 -61.47 -0.34 -9.65 16 17 C 0.17 2.00 5.46 -5.19 -0.03 1.97 16 18 C -0.13 -1.36 5.26 -104.47 -0.55 -1.91 16 19 C -0.08 -0.78 9.67 -39.61 -0.38 -1.16 16 20 C -0.13 -1.06 10.04 -39.56 -0.40 -1.45 16 21 C -0.10 -0.76 10.04 -39.60 -0.40 -1.16 16 22 C -0.15 -1.29 9.99 -39.43 -0.39 -1.68 16 23 C 0.12 1.23 6.68 -39.22 -0.26 0.97 16 24 O -0.49 -4.88 12.74 -19.42 -0.25 -5.12 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.35 6.08 7.55 -39.29 -0.30 5.78 16 31 H 0.35 6.05 8.58 -39.29 -0.34 5.72 16 32 H 0.40 4.34 8.46 -40.82 -0.35 4.00 16 33 H 0.07 0.90 8.00 -51.93 -0.42 0.49 16 34 H 0.08 1.07 7.85 -51.93 -0.41 0.66 16 35 H 0.13 1.07 8.04 -52.49 -0.42 0.65 16 36 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 37 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.39 2.50 9.06 45.56 0.41 2.92 16 LS Contribution 336.34 15.07 5.07 5.07 Total: -1.00 -32.63 336.34 -7.81 -40.44 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -4.67 Total: 13.33 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -3.38 Total: -10.25 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.34 Total: -49.10 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.16 Total: -15.59 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.63 -7.81 -40.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691614281.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.710 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds