Wall clock time and date at job start Tue Mar 31 2020 00:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00189 * 2 1 4 4 H 1.48497 * 109.46986 * 239.99673 * 3 2 1 5 5 H 1.48498 * 109.46638 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47039 * 119.99644 * 3 2 1 7 7 C 1.37881 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00525 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99742 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47157 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47183 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47162 * 304.99753 * 11 10 9 13 13 N 1.46898 * 109.47058 * 64.99992 * 11 10 9 14 14 C 1.50702 * 109.47031 * 184.99575 * 11 10 9 15 15 O 1.21272 * 120.00311 * 259.99831 * 14 11 10 16 16 N 1.34782 * 119.99550 * 80.00129 * 14 11 10 17 17 C 1.46497 * 119.99756 * 179.97438 * 16 14 11 18 18 C 1.50707 * 109.47222 * 180.02562 * 17 16 14 19 19 C 1.38163 * 120.02715 * 259.98027 * 18 17 16 20 20 C 1.38243 * 120.05438 * 180.02562 * 19 18 17 21 21 C 1.38289 * 120.11362 * 359.97438 * 20 19 18 22 22 C 1.38125 * 120.05159 * 0.02562 * 21 20 19 23 23 C 1.38708 * 120.02785 * 79.99933 * 18 17 16 24 24 O 1.35899 * 120.05461 * 359.95420 * 23 18 17 25 25 H 0.96993 * 119.99484 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47950 * 59.99204 * 9 7 2 27 27 H 1.09004 * 109.47350 * 299.99183 * 9 7 2 28 28 H 1.08999 * 109.47561 * 59.99809 * 10 9 7 29 29 H 1.08996 * 109.47156 * 299.99362 * 10 9 7 30 30 H 1.00902 * 111.00064 * 296.04444 * 13 11 10 31 31 H 1.00900 * 111.00391 * 59.99643 * 13 11 10 32 32 H 0.97003 * 120.00460 * 359.97438 * 16 14 11 33 33 H 1.08996 * 109.47542 * 59.99800 * 17 16 14 34 34 H 1.09004 * 109.47088 * 299.99903 * 17 16 14 35 35 H 1.08001 * 119.97024 * 0.03662 * 19 18 17 36 36 H 1.08004 * 119.94070 * 180.02562 * 20 19 18 37 37 H 1.07993 * 119.96940 * 180.28495 * 21 20 19 38 38 H 1.08000 * 120.02364 * 180.02562 * 22 21 20 39 39 H 0.96699 * 114.00749 * 270.02413 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 1 0.7884 -5.0068 0.8433 13 7 0.7281 -5.1189 -1.2537 14 6 2.4549 -6.1298 0.1249 15 8 2.7863 -6.7536 -0.8609 16 7 2.9583 -6.4586 1.3312 17 6 3.9053 -7.5697 1.4516 18 6 4.3120 -7.7292 2.8940 19 6 5.5176 -7.2166 3.3331 20 6 5.8914 -7.3630 4.6560 21 6 5.0600 -8.0220 5.5431 22 6 3.8538 -8.5361 5.1090 23 6 3.4765 -8.3909 3.7817 24 8 2.2899 -8.8954 3.3523 25 1 -0.4849 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6242 -2.5568 0.8904 28 1 2.8720 -3.6044 0.8905 29 1 2.8719 -3.6044 -0.8895 30 1 0.0233 -4.4009 -1.3300 31 1 1.3476 -5.1033 -2.0500 32 1 2.6934 -5.9594 2.1197 33 1 4.7874 -7.3627 0.8458 34 1 3.4333 -8.4887 1.1039 35 1 6.1683 -6.7011 2.6424 36 1 6.8340 -6.9613 4.9974 37 1 5.3523 -8.1310 6.5770 38 1 3.2047 -9.0503 5.8023 39 1 1.5502 -8.2769 3.4245 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691614281.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:11 Heat of formation + Delta-G solvation = -96.403838 kcal Electronic energy + Delta-G solvation = -20923.504645 eV Core-core repulsion = 17636.280008 eV Total energy + Delta-G solvation = -3287.224637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.26775 -40.46240 -37.58428 -37.14264 -35.99162 -34.83123 -32.43777 -31.67958 -30.78291 -28.58791 -27.03543 -25.19275 -23.56800 -22.57623 -22.26709 -21.16942 -19.30119 -18.93039 -18.13545 -17.35744 -17.03546 -16.84421 -16.53382 -16.09219 -15.91772 -15.79209 -15.37283 -14.86402 -14.76329 -14.57731 -14.11143 -14.01012 -13.62736 -13.42351 -13.17925 -12.95077 -12.92229 -12.67320 -12.53903 -12.38513 -11.80338 -11.72521 -11.39030 -11.31411 -10.83136 -10.55231 -10.16842 -9.90235 -9.65314 -9.56063 -8.20996 -6.31399 0.17306 0.33580 1.40400 1.41880 1.49837 1.60808 2.15027 2.40495 2.74496 3.12731 3.29931 3.59436 3.75677 3.82804 3.87403 4.12696 4.16866 4.25348 4.31618 4.51371 4.60481 4.66101 4.69459 4.84710 4.91177 5.01794 5.09056 5.34279 5.40084 5.46926 5.49651 5.53702 5.66161 5.81073 5.88609 6.07403 6.21759 6.47709 6.50699 6.78069 6.83969 7.20974 7.37750 8.89559 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017775 B = 0.003680 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.906600 B = 7607.281630 C = 8496.591453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.958 3.042 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.030 3.970 10 C -0.120 4.120 11 C 0.083 3.917 12 H 0.111 0.889 13 N -0.831 5.831 14 C 0.528 3.472 15 O -0.572 6.572 16 N -0.712 5.712 17 C 0.172 3.828 18 C -0.146 4.146 19 C -0.093 4.093 20 C -0.133 4.133 21 C -0.095 4.095 22 C -0.156 4.156 23 C 0.112 3.888 24 O -0.509 6.509 25 H 0.264 0.736 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.353 0.647 31 H 0.343 0.657 32 H 0.411 0.589 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.135 0.865 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.143 0.857 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.043 -15.128 12.614 21.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.160 4.160 11 C -0.033 4.033 12 H 0.129 0.871 13 N -0.362 5.362 14 C 0.314 3.686 15 O -0.451 6.451 16 N -0.364 5.364 17 C 0.049 3.951 18 C -0.147 4.147 19 C -0.111 4.111 20 C -0.151 4.151 21 C -0.113 4.113 22 C -0.174 4.174 23 C 0.067 3.933 24 O -0.321 6.321 25 H 0.073 0.927 26 H 0.020 0.980 27 H 0.021 0.979 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.168 0.832 31 H 0.156 0.844 32 H 0.247 0.753 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.153 0.847 36 H 0.167 0.833 37 H 0.171 0.829 38 H 0.161 0.839 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 9.214 -16.696 12.065 22.566 hybrid contribution 0.079 2.513 -0.065 2.515 sum 9.293 -14.182 11.999 20.772 Atomic orbital electron populations 1.70051 1.07486 1.27831 1.51267 1.25853 0.95713 1.02929 0.94717 0.85608 0.78393 0.78678 0.79028 1.19690 1.20829 1.19168 1.21601 0.93362 0.92492 1.51000 0.92711 1.18965 0.94023 0.91954 0.95757 1.22132 0.98788 0.93726 1.01386 1.21406 0.94707 0.91139 0.96012 0.87073 1.58759 1.18411 1.55653 1.03370 1.20757 0.80858 0.84070 0.82865 1.90627 1.61406 1.54604 1.38451 1.45893 1.46318 1.34772 1.09448 1.19939 0.92660 0.89689 0.92773 1.20151 0.97459 1.02102 0.94941 1.21256 0.95158 0.97684 0.97030 1.21504 1.01125 0.99638 0.92851 1.21462 0.92965 0.95703 1.01135 1.21675 0.99083 1.02050 0.94599 1.18527 0.87779 0.95208 0.91761 1.84758 1.17272 1.43552 1.86533 0.92724 0.97961 0.97863 0.91553 0.93789 0.83203 0.84367 0.75314 0.91370 0.91691 0.84674 0.83325 0.82898 0.83905 0.73607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.93 13.29 21.45 0.28 -53.64 16 2 C 0.01 0.36 5.46 84.66 0.46 0.82 16 3 Si 0.96 42.93 29.54 68.60 2.03 44.96 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.55 -29.74 9.11 25.60 0.23 -29.50 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.03 1.46 4.74 29.85 0.14 1.60 16 10 C -0.12 -4.62 4.78 30.60 0.15 -4.47 16 11 C 0.08 2.72 3.21 44.17 0.14 2.86 16 12 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 13 N -0.83 -28.57 8.94 -171.79 -1.53 -30.11 16 14 C 0.53 17.04 7.08 87.66 0.62 17.66 16 15 O -0.57 -22.55 16.25 -3.00 -0.05 -22.60 16 16 N -0.71 -17.55 5.55 -466.78 -2.59 -20.14 16 17 C 0.17 4.09 5.46 85.64 0.47 4.56 16 18 C -0.15 -2.86 5.26 -19.77 -0.10 -2.97 16 19 C -0.09 -1.57 9.67 22.25 0.22 -1.36 16 20 C -0.13 -1.81 10.04 22.28 0.22 -1.58 16 21 C -0.09 -1.20 10.04 22.25 0.22 -0.97 16 22 C -0.16 -2.36 9.99 22.36 0.22 -2.14 16 23 C 0.11 2.10 6.68 22.50 0.15 2.25 16 24 O -0.51 -9.63 12.74 -92.41 -1.18 -10.81 16 25 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 26 H 0.00 0.11 6.87 -2.39 -0.02 0.09 16 27 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 28 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.35 12.24 7.55 -89.69 -0.68 11.56 16 31 H 0.34 12.14 8.58 -89.69 -0.77 11.37 16 32 H 0.41 8.36 8.46 -92.71 -0.78 7.58 16 33 H 0.07 1.69 8.00 -2.39 -0.02 1.67 16 34 H 0.06 1.76 7.85 -2.38 -0.02 1.74 16 35 H 0.14 2.05 8.04 -2.91 -0.02 2.03 16 36 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 37 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 38 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 39 H 0.41 4.83 9.06 -74.06 -0.67 4.16 16 Total: -1.00 -69.06 336.34 -1.70 -70.76 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: -1.80 Total: 34.82 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 3.15 Total: -13.24 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -3.84 Total: -103.89 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -1.23 Total: -33.41 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -69.06 -1.70 -70.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691614281.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.644 kcal (2) G-P(sol) polarization free energy of solvation -69.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds