Wall clock time and date at job start Tue Mar 31 2020 00:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99920 * 2 1 4 4 H 1.48499 * 109.47183 * 269.99864 * 3 2 1 5 5 H 1.48497 * 109.47200 * 29.99993 * 3 2 1 6 6 H 1.48501 * 109.47239 * 149.99409 * 3 2 1 7 7 C 1.37880 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00111 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99558 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46987 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47357 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.46310 * 54.99995 * 11 10 9 13 13 N 1.46897 * 109.47336 * 295.00217 * 11 10 9 14 14 C 1.50697 * 109.47237 * 174.99376 * 11 10 9 15 15 O 1.21291 * 119.99544 * 100.00588 * 14 11 10 16 16 N 1.34773 * 120.00763 * 280.00543 * 14 11 10 17 17 C 1.46498 * 120.00389 * 180.02562 * 16 14 11 18 18 C 1.50698 * 109.47195 * 180.02562 * 17 16 14 19 19 C 1.38171 * 120.02521 * 260.00069 * 18 17 16 20 20 C 1.38244 * 120.05436 * 180.25752 * 19 18 17 21 21 C 1.38294 * 120.11199 * 359.44067 * 20 19 18 22 22 C 1.38125 * 120.05036 * 0.55704 * 21 20 19 23 23 C 1.38706 * 120.03077 * 79.97730 * 18 17 16 24 24 O 1.35899 * 120.05784 * 359.97438 * 23 18 17 25 25 H 0.97001 * 119.99721 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.47608 * 59.99773 * 9 7 2 27 27 H 1.09009 * 109.47262 * 299.99641 * 9 7 2 28 28 H 1.09004 * 109.47373 * 60.00056 * 10 9 7 29 29 H 1.08997 * 109.47307 * 300.00054 * 10 9 7 30 30 H 1.00902 * 110.99808 * 176.04320 * 13 11 10 31 31 H 1.00896 * 110.99826 * 299.99331 * 13 11 10 32 32 H 0.97000 * 119.99783 * 0.02562 * 16 14 11 33 33 H 1.08993 * 109.47455 * 59.99660 * 17 16 14 34 34 H 1.09008 * 109.46543 * 299.99792 * 17 16 14 35 35 H 1.08002 * 119.96962 * 359.97130 * 19 18 17 36 36 H 1.08001 * 119.94445 * 179.70422 * 20 19 18 37 37 H 1.07994 * 119.97182 * 180.30344 * 21 20 19 38 38 H 1.08007 * 120.02406 * 179.75054 * 22 21 20 39 39 H 0.96706 * 114.00065 * 89.99795 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4804 -4.9871 0.0025 12 1 0.7886 -5.0075 -0.8397 13 7 0.7280 -5.1176 1.2574 14 6 2.4550 -6.1298 -0.1202 15 8 2.7864 -6.7528 0.8663 16 7 2.9585 -6.4598 -1.3261 17 6 3.9056 -7.5711 -1.4454 18 6 4.3133 -7.7310 -2.8873 19 6 3.7268 -8.7092 -3.6672 20 6 4.1042 -8.8599 -4.9886 21 6 5.0610 -8.0251 -5.5364 22 6 5.6503 -7.0457 -4.7609 23 6 5.2774 -6.8962 -3.4328 24 8 5.8551 -5.9327 -2.6680 25 1 -0.4850 0.8401 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.8713 -3.6039 0.8923 29 1 2.8727 -3.6047 -0.8877 30 1 0.1637 -5.9541 1.2553 31 1 1.3475 -5.1014 2.0537 32 1 2.6938 -5.9614 -2.1150 33 1 3.4337 -8.4897 -1.0968 34 1 4.7877 -7.3632 -0.8396 35 1 2.9761 -9.3595 -3.2429 36 1 3.6480 -9.6282 -5.5953 37 1 5.3506 -8.1417 -6.5702 38 1 6.4004 -6.3966 -5.1880 39 1 6.6526 -6.2237 -2.2049 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691614283.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:14 Heat of formation + Delta-G solvation = -69.589147 kcal Electronic energy + Delta-G solvation = -20968.378206 eV Core-core repulsion = 17682.316342 eV Total energy + Delta-G solvation = -3286.061864 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38734 -39.42437 -36.90250 -35.36702 -34.81415 -32.74823 -31.61174 -30.13389 -30.01372 -27.15951 -25.60507 -23.36734 -22.93151 -21.64016 -20.59957 -19.76013 -18.61936 -17.27306 -16.55868 -16.31152 -16.11629 -15.71583 -15.47264 -15.21876 -14.54064 -14.36955 -14.21854 -13.88826 -13.47923 -13.15299 -12.73966 -12.62173 -12.29530 -12.25165 -11.96354 -11.73279 -11.47950 -10.85643 -10.70946 -10.62516 -10.50714 -10.11968 -9.74609 -9.33956 -9.27737 -9.03005 -8.96604 -8.91534 -8.29420 -8.14629 -5.89554 -3.91281 0.83628 0.95684 2.83873 3.14808 3.37866 3.43940 3.47803 3.60072 3.95012 4.35042 4.51944 4.54099 4.69675 4.92279 4.95833 5.11162 5.14980 5.36410 5.41305 5.46007 5.59664 5.59843 5.66646 5.90569 5.99191 6.11138 6.16831 6.45061 6.47092 6.53732 6.72657 7.15466 7.40108 7.43635 7.66399 7.81235 7.84964 8.01408 8.17919 8.37321 8.53662 9.16733 9.71563 11.21431 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017407 B = 0.003839 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.184340 B = 7291.812738 C = 8294.235952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.097 0.903 13 N -0.807 5.807 14 C 0.484 3.516 15 O -0.558 6.558 16 N -0.721 5.721 17 C 0.168 3.832 18 C -0.135 4.135 19 C -0.086 4.086 20 C -0.133 4.133 21 C -0.098 4.098 22 C -0.148 4.148 23 C 0.126 3.874 24 O -0.489 6.489 25 H 0.259 0.741 26 H 0.012 0.988 27 H 0.035 0.965 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.333 0.667 31 H 0.347 0.653 32 H 0.404 0.596 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.764 -19.805 -10.227 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.133 4.133 11 C -0.037 4.037 12 H 0.115 0.885 13 N -0.334 5.334 14 C 0.270 3.730 15 O -0.436 6.436 16 N -0.373 5.373 17 C 0.044 3.956 18 C -0.136 4.136 19 C -0.105 4.105 20 C -0.151 4.151 21 C -0.116 4.116 22 C -0.167 4.167 23 C 0.081 3.919 24 O -0.299 6.299 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.145 0.855 31 H 0.161 0.839 32 H 0.239 0.761 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 9.028 -19.085 -9.884 23.312 hybrid contribution 1.399 -0.014 -0.237 1.419 sum 10.427 -19.099 -10.121 23.999 Atomic orbital electron populations 1.69979 1.05942 1.26344 1.51012 1.24991 0.94800 0.99026 0.95536 0.86651 0.79897 0.83796 0.77971 1.20798 1.21288 1.19975 1.21292 0.92928 0.91335 1.50359 0.92974 1.19016 0.93572 0.89866 0.98146 1.21650 0.98808 0.92081 1.00754 1.21828 0.93519 0.93326 0.95003 0.88521 1.59008 1.26924 1.44203 1.03300 1.22761 0.82215 0.85625 0.82389 1.90637 1.61465 1.54448 1.37055 1.46152 1.46101 1.34522 1.10512 1.19937 0.93570 0.90698 0.91392 1.20307 0.99633 0.97144 0.96487 1.21039 0.98573 0.97094 0.93776 1.21183 0.98356 1.00185 0.95340 1.21108 0.96071 0.94648 0.99786 1.21492 1.01875 0.99322 0.93966 1.18398 0.94520 0.88662 0.90339 1.84915 1.45486 1.35612 1.63916 0.93150 0.96914 0.94692 0.92907 0.92701 0.85533 0.83858 0.76127 0.91084 0.91002 0.85401 0.85580 0.85507 0.85159 0.75255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.36 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.82 4.86 -27.89 -0.14 0.68 16 10 C -0.09 -1.99 4.78 -26.73 -0.13 -2.12 16 11 C 0.08 1.38 3.15 -68.86 -0.22 1.17 16 12 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 13 N -0.81 -14.05 8.44 -5.65 -0.05 -14.10 16 14 C 0.48 7.94 7.07 -10.99 -0.08 7.86 16 15 O -0.56 -10.52 16.25 5.55 0.09 -10.43 16 16 N -0.72 -9.74 5.55 -61.47 -0.34 -10.08 16 17 C 0.17 1.95 5.46 -5.20 -0.03 1.92 16 18 C -0.13 -1.35 5.26 -104.47 -0.55 -1.90 16 19 C -0.09 -0.73 9.67 -39.60 -0.38 -1.12 16 20 C -0.13 -0.99 10.04 -39.56 -0.40 -1.39 16 21 C -0.10 -0.74 10.04 -39.60 -0.40 -1.14 16 22 C -0.15 -1.30 9.99 -39.43 -0.39 -1.70 16 23 C 0.13 1.28 6.68 -39.22 -0.26 1.02 16 24 O -0.49 -5.20 12.74 -19.42 -0.25 -5.44 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.03 0.99 7.75 -51.92 -0.40 0.59 16 28 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.33 5.02 9.06 -39.29 -0.36 4.66 16 31 H 0.35 6.14 8.58 -39.29 -0.34 5.80 16 32 H 0.40 5.17 8.46 -40.82 -0.35 4.83 16 33 H 0.07 0.80 8.00 -51.93 -0.42 0.39 16 34 H 0.07 0.88 7.85 -51.92 -0.41 0.47 16 35 H 0.13 0.91 8.04 -52.49 -0.42 0.49 16 36 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 37 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 39 H 0.39 2.43 9.06 45.56 0.41 2.84 16 LS Contribution 338.30 15.07 5.10 5.10 Total: -1.00 -34.71 338.30 -7.89 -42.60 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -4.77 Total: 12.39 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -3.38 Total: -10.51 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.35 Total: -50.81 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.16 Total: -15.87 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.71 -7.89 -42.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691614283.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.993 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds