Wall clock time and date at job start Tue Mar 31 2020 00:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99920 * 2 1 4 4 H 1.48499 * 109.47183 * 269.99864 * 3 2 1 5 5 H 1.48497 * 109.47200 * 29.99993 * 3 2 1 6 6 H 1.48501 * 109.47239 * 149.99409 * 3 2 1 7 7 C 1.37880 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00111 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99558 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46987 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47357 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.46310 * 54.99995 * 11 10 9 13 13 N 1.46897 * 109.47336 * 295.00217 * 11 10 9 14 14 C 1.50697 * 109.47237 * 174.99376 * 11 10 9 15 15 O 1.21291 * 119.99544 * 100.00588 * 14 11 10 16 16 N 1.34773 * 120.00763 * 280.00543 * 14 11 10 17 17 C 1.46498 * 120.00389 * 180.02562 * 16 14 11 18 18 C 1.50698 * 109.47195 * 180.02562 * 17 16 14 19 19 C 1.38171 * 120.02521 * 260.00069 * 18 17 16 20 20 C 1.38244 * 120.05436 * 180.25752 * 19 18 17 21 21 C 1.38294 * 120.11199 * 359.44067 * 20 19 18 22 22 C 1.38125 * 120.05036 * 0.55704 * 21 20 19 23 23 C 1.38706 * 120.03077 * 79.97730 * 18 17 16 24 24 O 1.35899 * 120.05784 * 359.97438 * 23 18 17 25 25 H 0.97001 * 119.99721 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.47608 * 59.99773 * 9 7 2 27 27 H 1.09009 * 109.47262 * 299.99641 * 9 7 2 28 28 H 1.09004 * 109.47373 * 60.00056 * 10 9 7 29 29 H 1.08997 * 109.47307 * 300.00054 * 10 9 7 30 30 H 1.00902 * 110.99808 * 176.04320 * 13 11 10 31 31 H 1.00896 * 110.99826 * 299.99331 * 13 11 10 32 32 H 0.97000 * 119.99783 * 0.02562 * 16 14 11 33 33 H 1.08993 * 109.47455 * 59.99660 * 17 16 14 34 34 H 1.09008 * 109.46543 * 299.99792 * 17 16 14 35 35 H 1.08002 * 119.96962 * 359.97130 * 19 18 17 36 36 H 1.08001 * 119.94445 * 179.70422 * 20 19 18 37 37 H 1.07994 * 119.97182 * 180.30344 * 21 20 19 38 38 H 1.08007 * 120.02406 * 179.75054 * 22 21 20 39 39 H 0.96706 * 114.00065 * 89.99795 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4804 -4.9871 0.0025 12 1 0.7886 -5.0075 -0.8397 13 7 0.7280 -5.1176 1.2574 14 6 2.4550 -6.1298 -0.1202 15 8 2.7864 -6.7528 0.8663 16 7 2.9585 -6.4598 -1.3261 17 6 3.9056 -7.5711 -1.4454 18 6 4.3133 -7.7310 -2.8873 19 6 3.7268 -8.7092 -3.6672 20 6 4.1042 -8.8599 -4.9886 21 6 5.0610 -8.0251 -5.5364 22 6 5.6503 -7.0457 -4.7609 23 6 5.2774 -6.8962 -3.4328 24 8 5.8551 -5.9327 -2.6680 25 1 -0.4850 0.8401 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.8713 -3.6039 0.8923 29 1 2.8727 -3.6047 -0.8877 30 1 0.1637 -5.9541 1.2553 31 1 1.3475 -5.1014 2.0537 32 1 2.6938 -5.9614 -2.1150 33 1 3.4337 -8.4897 -1.0968 34 1 4.7877 -7.3632 -0.8396 35 1 2.9761 -9.3595 -3.2429 36 1 3.6480 -9.6282 -5.5953 37 1 5.3506 -8.1417 -6.5702 38 1 6.4004 -6.3966 -5.1880 39 1 6.6526 -6.2237 -2.2049 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691614283.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:14 Heat of formation + Delta-G solvation = -96.943073 kcal Electronic energy + Delta-G solvation = -20969.564361 eV Core-core repulsion = 17682.316342 eV Total energy + Delta-G solvation = -3287.248020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.30563 -40.52731 -37.60342 -36.88684 -36.03110 -34.80978 -32.44599 -31.92231 -30.78179 -28.52101 -27.07707 -25.01319 -23.58249 -22.55310 -22.20117 -21.18986 -19.35993 -18.71402 -18.07837 -17.62780 -17.06678 -16.81453 -16.69648 -16.39491 -16.01087 -15.72984 -15.30525 -14.97864 -14.75417 -14.27961 -14.05243 -13.80288 -13.72942 -13.39608 -13.27517 -12.96003 -12.79445 -12.52004 -12.38561 -12.26633 -11.77864 -11.66585 -11.39572 -11.26645 -11.01151 -10.49146 -10.17733 -9.98734 -9.67808 -9.49954 -8.13702 -6.24019 0.16890 0.32611 1.41335 1.43010 1.49977 1.54231 2.21355 2.44917 2.76239 3.19064 3.29453 3.56185 3.59104 3.85221 3.87797 4.09715 4.15007 4.29134 4.32276 4.48210 4.55719 4.65335 4.78080 4.91122 4.93964 5.00193 5.24603 5.33398 5.39251 5.48588 5.52169 5.56937 5.84010 5.88485 5.98346 6.09149 6.30846 6.42802 6.53903 6.80259 6.94100 7.10926 7.43912 8.97596 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017407 B = 0.003839 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.184340 B = 7291.812738 C = 8294.235952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.054 0.946 9 C 0.040 3.960 10 C -0.080 4.080 11 C 0.086 3.914 12 H 0.108 0.892 13 N -0.817 5.817 14 C 0.490 3.510 15 O -0.583 6.583 16 N -0.708 5.708 17 C 0.170 3.830 18 C -0.148 4.148 19 C -0.090 4.090 20 C -0.133 4.133 21 C -0.095 4.095 22 C -0.159 4.159 23 C 0.111 3.889 24 O -0.510 6.510 25 H 0.262 0.738 26 H -0.007 1.007 27 H 0.007 0.993 28 H 0.042 0.958 29 H 0.061 0.939 30 H 0.347 0.653 31 H 0.345 0.655 32 H 0.409 0.591 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.141 0.859 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.139 0.861 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.705 -20.454 -11.756 25.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.072 0.928 9 C 0.003 3.997 10 C -0.118 4.118 11 C -0.030 4.030 12 H 0.126 0.874 13 N -0.346 5.346 14 C 0.276 3.724 15 O -0.463 6.463 16 N -0.359 5.359 17 C 0.047 3.953 18 C -0.149 4.149 19 C -0.108 4.108 20 C -0.150 4.150 21 C -0.113 4.113 22 C -0.178 4.178 23 C 0.066 3.934 24 O -0.323 6.323 25 H 0.071 0.929 26 H 0.011 0.989 27 H 0.026 0.974 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.244 0.756 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.159 0.841 36 H 0.170 0.830 37 H 0.170 0.830 38 H 0.156 0.844 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 9.989 -19.759 -11.442 24.922 hybrid contribution 1.109 0.137 0.178 1.132 sum 11.098 -19.622 -11.264 25.200 Atomic orbital electron populations 1.70106 1.07614 1.27531 1.51712 1.25904 0.95725 1.03026 0.94919 0.85525 0.78625 0.78869 0.78474 1.19671 1.20746 1.19136 1.21725 0.93304 0.92802 1.50460 0.92796 1.18824 0.93842 0.91315 0.95755 1.21360 0.97683 0.92251 1.00535 1.21608 0.93721 0.92085 0.95557 0.87420 1.58972 1.27189 1.45313 1.03167 1.22329 0.81993 0.85224 0.82888 1.90629 1.62309 1.55342 1.38038 1.46094 1.45488 1.34629 1.09662 1.19978 0.92661 0.89860 0.92796 1.20192 1.00612 0.98405 0.95652 1.21259 0.98603 0.96680 0.94270 1.21515 0.97972 1.00484 0.95065 1.21464 0.95316 0.93675 1.00838 1.21681 1.02431 1.00055 0.93583 1.18598 0.94977 0.88858 0.90981 1.84860 1.46526 1.36525 1.64368 0.92892 0.98859 0.97424 0.93936 0.92004 0.83956 0.84106 0.75570 0.90619 0.91867 0.84145 0.83035 0.83001 0.84362 0.73590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.54 -31.83 9.11 25.60 0.23 -31.60 16 8 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.04 2.14 4.86 29.85 0.15 2.28 16 10 C -0.08 -3.39 4.78 30.59 0.15 -3.24 16 11 C 0.09 3.00 3.15 44.17 0.14 3.14 16 12 H 0.11 3.51 8.14 -2.38 -0.02 3.49 16 13 N -0.82 -28.59 8.44 -171.80 -1.45 -30.04 16 14 C 0.49 15.82 7.07 87.66 0.62 16.44 16 15 O -0.58 -21.75 16.25 -3.06 -0.05 -21.80 16 16 N -0.71 -18.57 5.55 -466.79 -2.59 -21.16 16 17 C 0.17 3.83 5.46 85.63 0.47 4.30 16 18 C -0.15 -2.79 5.26 -19.77 -0.10 -2.89 16 19 C -0.09 -1.34 9.67 22.26 0.22 -1.13 16 20 C -0.13 -1.61 10.04 22.28 0.22 -1.38 16 21 C -0.09 -1.18 10.04 22.26 0.22 -0.96 16 22 C -0.16 -2.55 9.99 22.37 0.22 -2.33 16 23 C 0.11 2.16 6.68 22.50 0.15 2.31 16 24 O -0.51 -10.66 12.74 -92.41 -1.18 -11.84 16 25 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 26 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 27 H 0.01 0.43 7.75 -2.38 -0.02 0.41 16 28 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.35 10.34 9.06 -89.69 -0.81 9.52 16 31 H 0.35 12.33 8.58 -89.70 -0.77 11.56 16 32 H 0.41 10.07 8.46 -92.71 -0.78 9.28 16 33 H 0.08 1.64 8.00 -2.39 -0.02 1.62 16 34 H 0.06 1.54 7.85 -2.38 -0.02 1.52 16 35 H 0.14 1.68 8.04 -2.91 -0.02 1.66 16 36 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 37 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 38 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 39 H 0.41 5.01 9.06 -74.05 -0.67 4.34 16 Total: -1.00 -74.03 338.30 -1.75 -75.78 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -1.94 Total: 33.49 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 3.15 Total: -14.48 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -3.75 Total: -108.47 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -1.23 Total: -33.64 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -74.03 -1.75 -75.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691614283.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.162 kcal (2) G-P(sol) polarization free energy of solvation -74.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds