Wall clock time and date at job start Tue Mar 31 2020 00:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86800 * 120.00054 * 2 1 4 4 H 1.48498 * 109.47510 * 239.99922 * 3 2 1 5 5 H 1.48502 * 109.46943 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46898 * 119.99824 * 3 2 1 7 7 C 1.38956 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00085 * 161.24456 * 7 2 1 9 9 N 1.37096 * 119.99408 * 341.23930 * 7 2 1 10 10 C 1.46496 * 120.00460 * 321.40868 * 9 7 2 11 11 C 1.50703 * 109.47322 * 270.00187 * 10 9 7 12 12 C 1.38235 * 119.99838 * 269.72911 * 11 10 9 13 13 C 1.38237 * 120.00079 * 179.76418 * 12 11 10 14 14 C 1.38245 * 119.99293 * 0.50732 * 13 12 11 15 15 C 1.38225 * 120.00213 * 359.74099 * 14 13 12 16 16 C 1.38231 * 120.00308 * 0.02562 * 15 14 13 17 17 C 1.34778 * 119.99867 * 141.40951 * 9 7 2 18 18 O 1.21287 * 120.00321 * 174.80228 * 17 9 7 19 19 C 1.50710 * 119.99586 * 355.07984 * 17 9 7 20 20 C 1.53003 * 109.46882 * 184.69393 * 19 17 9 21 21 H 1.08996 * 109.47192 * 305.00300 * 20 19 17 22 22 O 1.42909 * 109.46903 * 65.00148 * 20 19 17 23 23 C 1.52992 * 109.47146 * 184.99841 * 20 19 17 24 24 N 1.46902 * 109.47391 * 180.02562 * 23 20 19 25 25 H 0.96997 * 119.99971 * 5.02624 * 1 2 3 26 26 H 1.09000 * 109.47174 * 30.00103 * 10 9 7 27 27 H 1.09005 * 109.47102 * 150.00147 * 10 9 7 28 28 H 1.08004 * 120.00115 * 359.97438 * 12 11 10 29 29 H 1.07992 * 120.00334 * 180.22743 * 13 12 11 30 30 H 1.08004 * 119.99199 * 179.72808 * 14 13 12 31 31 H 1.08002 * 119.99914 * 179.97438 * 15 14 13 32 32 H 1.08002 * 120.00315 * 179.97438 * 16 15 14 33 33 H 1.08994 * 109.47225 * 304.69518 * 19 17 9 34 34 H 1.09003 * 109.46852 * 64.69862 * 19 17 9 35 35 H 0.96698 * 113.99908 * 60.00017 * 22 20 19 36 36 H 1.09001 * 109.47547 * 300.00760 * 23 20 19 37 37 H 1.09006 * 109.46982 * 60.00536 * 23 20 19 38 38 H 1.00896 * 110.99682 * 56.04669 * 24 23 20 39 39 H 1.00900 * 111.00285 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2124 5 1 1.2830 2.7464 0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0458 -1.2280 -0.3013 9 7 1.3780 -2.3592 0.3808 10 6 0.4253 -2.3410 1.4936 11 6 1.1551 -2.6115 2.7841 12 6 1.2982 -3.9092 3.2383 13 6 1.9718 -4.1578 4.4196 14 6 2.4931 -3.1075 5.1520 15 6 2.3455 -1.8095 4.7004 16 6 1.6761 -1.5614 3.5167 17 6 1.6342 -3.5124 -0.2681 18 8 1.1496 -4.5515 0.1275 19 6 2.5279 -3.5116 -1.4816 20 6 2.5598 -4.9141 -2.0923 21 1 2.8601 -5.6349 -1.3318 22 8 1.2596 -5.2507 -2.5806 23 6 3.5621 -4.9445 -3.2478 24 7 3.5923 -6.2909 -3.8347 25 1 -0.4850 0.8368 -0.0736 26 1 -0.0542 -1.3636 1.5454 27 1 -0.3317 -3.1094 1.3364 28 1 0.8868 -4.7293 2.6685 29 1 2.0869 -5.1719 4.7725 30 1 3.0156 -3.3014 6.0772 31 1 2.7524 -0.9890 5.2729 32 1 1.5603 -0.5471 3.1641 33 1 2.1429 -2.8042 -2.2159 34 1 3.5367 -3.2195 -1.1896 35 1 0.9278 -4.6502 -3.2620 36 1 3.2618 -4.2237 -4.0083 37 1 4.5538 -4.6878 -2.8754 38 1 2.6708 -6.5776 -4.1292 39 1 4.2477 -6.3370 -4.6004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703398032.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:03 Heat of formation + Delta-G solvation = -62.269603 kcal Electronic energy + Delta-G solvation = -22035.714849 eV Core-core repulsion = 18749.970384 eV Total energy + Delta-G solvation = -3285.744465 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.14677 -38.24296 -36.96262 -34.74938 -33.46053 -31.89610 -31.10750 -30.23299 -29.96162 -26.19235 -25.26940 -23.92100 -21.86389 -21.29090 -20.52845 -19.09179 -17.20831 -16.40105 -15.99279 -15.76605 -15.58935 -15.20518 -14.75422 -14.48179 -14.25004 -14.13866 -13.87149 -13.40589 -12.84208 -12.73675 -12.43143 -12.37378 -11.99376 -11.89556 -11.45097 -11.28867 -11.04753 -10.94276 -10.69407 -10.55911 -10.36929 -10.29263 -10.13369 -9.62429 -9.18099 -8.61699 -8.50341 -8.28126 -8.00376 -7.50954 -6.43239 -4.13990 1.99147 2.04817 3.05377 3.14830 3.16802 3.91008 4.05270 4.32985 4.52010 4.88479 4.95317 4.98746 5.37263 5.39055 5.46440 5.52329 5.62342 5.64911 5.86219 5.90437 6.01886 6.15522 6.23319 6.30157 6.39342 6.58667 6.66315 6.68848 6.82411 7.08143 7.11108 7.16984 7.19336 7.39373 7.49544 7.52044 7.67625 7.92191 8.12443 8.32653 9.03623 9.50408 9.94968 10.58790 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012422 B = 0.007014 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.552544 B = 3991.256927 C = 5543.371942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.046 3.954 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.085 0.915 9 N -0.437 5.437 10 C 0.146 3.854 11 C -0.076 4.076 12 C -0.103 4.103 13 C -0.133 4.133 14 C -0.136 4.136 15 C -0.133 4.133 16 C -0.098 4.098 17 C 0.479 3.521 18 O -0.587 6.587 19 C -0.151 4.151 20 C 0.126 3.874 21 H 0.106 0.894 22 O -0.546 6.546 23 C 0.029 3.971 24 N -0.847 5.847 25 H 0.272 0.728 26 H 0.113 0.887 27 H 0.062 0.938 28 H 0.125 0.875 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.361 0.639 36 H 0.027 0.973 37 H 0.078 0.922 38 H 0.346 0.654 39 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.811 -2.222 -0.768 5.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.463 4.463 8 H 0.103 0.897 9 N -0.156 5.156 10 C 0.023 3.977 11 C -0.078 4.078 12 C -0.121 4.121 13 C -0.151 4.151 14 C -0.154 4.154 15 C -0.151 4.151 16 C -0.116 4.116 17 C 0.268 3.732 18 O -0.471 6.471 19 C -0.192 4.192 20 C 0.066 3.934 21 H 0.124 0.876 22 O -0.349 6.349 23 C -0.102 4.102 24 N -0.377 5.377 25 H 0.082 0.918 26 H 0.131 0.869 27 H 0.080 0.920 28 H 0.143 0.857 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.206 0.794 36 H 0.045 0.955 37 H 0.096 0.904 38 H 0.160 0.840 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.696 -3.288 0.641 5.768 hybrid contribution 0.312 2.131 -1.303 2.517 sum 5.008 -1.156 -0.662 5.182 Atomic orbital electron populations 1.69794 1.06174 1.28117 1.45701 1.25373 0.95112 0.99687 0.95823 0.86272 0.79443 0.81388 0.79283 1.19766 1.20822 1.19644 1.19320 0.95385 0.84551 1.47052 0.89750 1.43338 1.39245 1.07014 1.26012 1.20420 0.90969 1.04376 0.81940 1.20649 0.97842 0.92703 0.96583 1.21301 0.98281 0.97116 0.95445 1.21056 0.99708 0.98340 0.95992 1.20956 1.01487 0.93133 0.99833 1.21034 1.00597 0.96398 0.97113 1.21105 0.97163 0.99322 0.94056 1.20216 0.84080 0.84219 0.84694 1.90544 1.55699 1.32103 1.68784 1.22069 1.01105 0.97493 0.98495 1.21727 0.81734 0.96070 0.93866 0.87594 1.86698 1.33191 1.55511 1.59486 1.22555 1.01003 0.89418 0.97264 1.58585 1.14077 1.26466 1.38605 0.91782 0.86922 0.91976 0.85677 0.87030 0.87194 0.87030 0.86315 0.89380 0.89740 0.79396 0.95469 0.90396 0.84042 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.72 11.37 55.50 0.63 -21.09 16 2 C 0.05 1.11 5.01 -17.47 -0.09 1.02 16 3 Si 0.91 18.67 29.60 -169.99 -5.03 13.64 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.34 -8.10 8.51 -14.93 -0.13 -8.23 16 8 H 0.08 1.97 7.26 -52.49 -0.38 1.59 16 9 N -0.44 -10.64 2.50 -116.09 -0.29 -10.93 16 10 C 0.15 3.48 5.09 -5.19 -0.03 3.45 16 11 C -0.08 -1.65 5.46 -104.62 -0.57 -2.22 16 12 C -0.10 -2.09 9.57 -39.58 -0.38 -2.47 16 13 C -0.13 -2.33 10.05 -39.58 -0.40 -2.72 16 14 C -0.14 -2.22 10.05 -39.58 -0.40 -2.62 16 15 C -0.13 -2.30 10.05 -39.59 -0.40 -2.70 16 16 C -0.10 -1.96 9.70 -39.59 -0.38 -2.34 16 17 C 0.48 11.31 7.47 -10.98 -0.08 11.23 16 18 O -0.59 -15.11 14.35 -6.11 -0.09 -15.19 16 19 C -0.15 -2.86 4.11 -27.88 -0.11 -2.97 16 20 C 0.13 2.15 2.79 -26.73 -0.07 2.07 16 21 H 0.11 2.08 7.88 -51.93 -0.41 1.67 16 22 O -0.55 -9.73 12.03 -46.89 -0.56 -10.30 16 23 C 0.03 0.38 6.49 -3.83 -0.02 0.36 16 24 N -0.85 -10.48 9.62 -10.37 -0.10 -10.58 16 25 H 0.27 6.52 8.32 -40.82 -0.34 6.18 16 26 H 0.11 2.82 5.43 -51.93 -0.28 2.54 16 27 H 0.06 1.53 7.44 -51.93 -0.39 1.15 16 28 H 0.13 2.67 7.40 -52.48 -0.39 2.28 16 29 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 31 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 33 H 0.09 1.64 8.04 -51.93 -0.42 1.22 16 34 H 0.08 1.50 7.79 -51.93 -0.40 1.10 16 35 H 0.36 5.15 9.05 45.56 0.41 5.57 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.35 4.21 8.38 -39.29 -0.33 3.88 16 39 H 0.34 3.29 9.08 -39.29 -0.36 2.93 16 LS Contribution 329.70 15.07 4.97 4.97 Total: -1.00 -29.11 329.70 -8.15 -37.27 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -4.62 Total: 20.36 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -3.06 Total: -8.14 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.24 Total: -42.60 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.65 Total: -25.49 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.11 -8.15 -37.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703398032.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.004 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds