Wall clock time and date at job start Tue Mar 31 2020 00:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86800 * 120.00054 * 2 1 4 4 H 1.48498 * 109.47510 * 239.99922 * 3 2 1 5 5 H 1.48502 * 109.46943 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46898 * 119.99824 * 3 2 1 7 7 C 1.38956 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00085 * 161.24456 * 7 2 1 9 9 N 1.37096 * 119.99408 * 341.23930 * 7 2 1 10 10 C 1.46496 * 120.00460 * 321.40868 * 9 7 2 11 11 C 1.50703 * 109.47322 * 270.00187 * 10 9 7 12 12 C 1.38235 * 119.99838 * 269.72911 * 11 10 9 13 13 C 1.38237 * 120.00079 * 179.76418 * 12 11 10 14 14 C 1.38245 * 119.99293 * 0.50732 * 13 12 11 15 15 C 1.38225 * 120.00213 * 359.74099 * 14 13 12 16 16 C 1.38231 * 120.00308 * 0.02562 * 15 14 13 17 17 C 1.34778 * 119.99867 * 141.40951 * 9 7 2 18 18 O 1.21287 * 120.00321 * 174.80228 * 17 9 7 19 19 C 1.50710 * 119.99586 * 355.07984 * 17 9 7 20 20 C 1.53003 * 109.46882 * 184.69393 * 19 17 9 21 21 H 1.08996 * 109.47192 * 305.00300 * 20 19 17 22 22 O 1.42909 * 109.46903 * 65.00148 * 20 19 17 23 23 C 1.52992 * 109.47146 * 184.99841 * 20 19 17 24 24 N 1.46902 * 109.47391 * 180.02562 * 23 20 19 25 25 H 0.96997 * 119.99971 * 5.02624 * 1 2 3 26 26 H 1.09000 * 109.47174 * 30.00103 * 10 9 7 27 27 H 1.09005 * 109.47102 * 150.00147 * 10 9 7 28 28 H 1.08004 * 120.00115 * 359.97438 * 12 11 10 29 29 H 1.07992 * 120.00334 * 180.22743 * 13 12 11 30 30 H 1.08004 * 119.99199 * 179.72808 * 14 13 12 31 31 H 1.08002 * 119.99914 * 179.97438 * 15 14 13 32 32 H 1.08002 * 120.00315 * 179.97438 * 16 15 14 33 33 H 1.08994 * 109.47225 * 304.69518 * 19 17 9 34 34 H 1.09003 * 109.46852 * 64.69862 * 19 17 9 35 35 H 0.96698 * 113.99908 * 60.00017 * 22 20 19 36 36 H 1.09001 * 109.47547 * 300.00760 * 23 20 19 37 37 H 1.09006 * 109.46982 * 60.00536 * 23 20 19 38 38 H 1.00896 * 110.99682 * 56.04669 * 24 23 20 39 39 H 1.00900 * 111.00285 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2124 5 1 1.2830 2.7464 0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0458 -1.2280 -0.3013 9 7 1.3780 -2.3592 0.3808 10 6 0.4253 -2.3410 1.4936 11 6 1.1551 -2.6115 2.7841 12 6 1.2982 -3.9092 3.2383 13 6 1.9718 -4.1578 4.4196 14 6 2.4931 -3.1075 5.1520 15 6 2.3455 -1.8095 4.7004 16 6 1.6761 -1.5614 3.5167 17 6 1.6342 -3.5124 -0.2681 18 8 1.1496 -4.5515 0.1275 19 6 2.5279 -3.5116 -1.4816 20 6 2.5598 -4.9141 -2.0923 21 1 2.8601 -5.6349 -1.3318 22 8 1.2596 -5.2507 -2.5806 23 6 3.5621 -4.9445 -3.2478 24 7 3.5923 -6.2909 -3.8347 25 1 -0.4850 0.8368 -0.0736 26 1 -0.0542 -1.3636 1.5454 27 1 -0.3317 -3.1094 1.3364 28 1 0.8868 -4.7293 2.6685 29 1 2.0869 -5.1719 4.7725 30 1 3.0156 -3.3014 6.0772 31 1 2.7524 -0.9890 5.2729 32 1 1.5603 -0.5471 3.1641 33 1 2.1429 -2.8042 -2.2159 34 1 3.5367 -3.2195 -1.1896 35 1 0.9278 -4.6502 -3.2620 36 1 3.2618 -4.2237 -4.0083 37 1 4.5538 -4.6878 -2.8754 38 1 2.6708 -6.5776 -4.1292 39 1 4.2477 -6.3370 -4.6004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703398032.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:02 Heat of formation + Delta-G solvation = -82.598388 kcal Electronic energy + Delta-G solvation = -22036.596372 eV Core-core repulsion = 18749.970384 eV Total energy + Delta-G solvation = -3286.625987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.85264 -39.74373 -38.43385 -36.59983 -34.60871 -33.68214 -32.76199 -31.69820 -31.43988 -27.79418 -26.95740 -25.48101 -23.33935 -22.63071 -22.03494 -20.92690 -18.90390 -17.94090 -17.38814 -17.22510 -17.13247 -16.64827 -16.39811 -16.00495 -15.86856 -15.68034 -15.29089 -14.82243 -14.40176 -14.21586 -13.89418 -13.84275 -13.54849 -13.21106 -13.13602 -13.00172 -12.70924 -12.56848 -12.42035 -12.15688 -11.90583 -11.78112 -11.73062 -11.08831 -10.91626 -10.33118 -9.75136 -9.58994 -9.55084 -9.40608 -8.27917 -6.05381 0.51461 0.57082 1.42208 1.48866 1.55934 2.10392 2.32348 2.79936 3.07435 3.17168 3.57335 3.73381 4.02602 4.07214 4.14174 4.20423 4.23409 4.24682 4.36986 4.50049 4.58616 4.73534 4.74798 4.80185 4.86595 4.96730 5.16121 5.22825 5.24638 5.29907 5.50976 5.64188 5.65976 5.91507 6.06708 6.21331 6.21548 6.44216 6.63474 6.90325 7.16204 7.64368 8.09845 8.74984 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012422 B = 0.007014 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.552544 B = 3991.256927 C = 5543.371942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.010 3.990 3 Si 0.974 3.026 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.348 4.348 8 H 0.093 0.907 9 N -0.446 5.446 10 C 0.152 3.848 11 C -0.099 4.099 12 C -0.123 4.123 13 C -0.129 4.129 14 C -0.123 4.123 15 C -0.126 4.126 16 C -0.114 4.114 17 C 0.461 3.539 18 O -0.618 6.618 19 C -0.139 4.139 20 C 0.134 3.866 21 H 0.075 0.925 22 O -0.566 6.566 23 C 0.041 3.959 24 N -0.855 5.855 25 H 0.273 0.727 26 H 0.096 0.904 27 H 0.033 0.967 28 H 0.102 0.898 29 H 0.140 0.860 30 H 0.155 0.845 31 H 0.146 0.854 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.376 0.624 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.347 0.653 39 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.269 -1.478 -0.086 7.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.193 4.193 3 Si 0.798 3.202 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.475 4.475 8 H 0.111 0.889 9 N -0.164 5.164 10 C 0.029 3.971 11 C -0.101 4.101 12 C -0.142 4.142 13 C -0.147 4.147 14 C -0.141 4.141 15 C -0.144 4.144 16 C -0.133 4.133 17 C 0.251 3.749 18 O -0.505 6.505 19 C -0.180 4.180 20 C 0.074 3.926 21 H 0.093 0.907 22 O -0.371 6.371 23 C -0.090 4.090 24 N -0.387 5.387 25 H 0.082 0.918 26 H 0.114 0.886 27 H 0.052 0.948 28 H 0.120 0.880 29 H 0.158 0.842 30 H 0.172 0.828 31 H 0.164 0.836 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.223 0.777 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.161 0.839 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.171 -2.542 1.301 7.718 hybrid contribution -0.507 1.845 -1.448 2.400 sum 6.664 -0.697 -0.147 6.702 Atomic orbital electron populations 1.69915 1.07739 1.28877 1.46553 1.26126 0.95634 1.02527 0.95004 0.85278 0.78158 0.77161 0.79633 1.18508 1.21043 1.19282 1.19605 0.95785 0.84737 1.47406 0.88911 1.43581 1.39037 1.07536 1.26281 1.20198 0.90970 1.02193 0.83746 1.20461 0.99442 0.93981 0.96174 1.21201 1.00015 0.95907 0.97049 1.21385 0.98236 1.00475 0.94556 1.21434 0.99948 0.92015 1.00681 1.21410 0.98983 0.98178 0.95798 1.21095 0.98471 0.98203 0.95503 1.21078 0.84490 0.83598 0.85717 1.90513 1.57086 1.33038 1.69853 1.22031 1.00544 0.99022 0.96398 1.21570 0.82550 0.93763 0.94708 0.90665 1.86649 1.33938 1.56304 1.60254 1.22355 1.00030 0.90485 0.96145 1.58528 1.14682 1.25903 1.39635 0.91761 0.88615 0.94809 0.88031 0.84173 0.82751 0.83620 0.87456 0.88837 0.88371 0.77690 0.93577 0.89431 0.83937 0.83383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.29 11.37 21.66 0.25 -46.05 16 2 C 0.01 0.50 5.01 84.93 0.43 0.93 16 3 Si 0.97 37.82 29.60 68.60 2.03 39.85 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 5 H -0.28 -11.08 7.11 99.48 0.71 -10.38 16 6 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.35 -17.01 8.51 84.04 0.72 -16.30 16 8 H 0.09 4.29 7.26 -2.91 -0.02 4.27 16 9 N -0.45 -22.56 2.50 -639.59 -1.60 -24.16 16 10 C 0.15 7.73 5.09 85.63 0.44 8.16 16 11 C -0.10 -4.45 5.46 -19.87 -0.11 -4.55 16 12 C -0.12 -5.14 9.57 22.27 0.21 -4.93 16 13 C -0.13 -4.26 10.05 22.27 0.22 -4.04 16 14 C -0.12 -3.55 10.05 22.27 0.22 -3.33 16 15 C -0.13 -4.00 10.05 22.26 0.22 -3.77 16 16 C -0.11 -4.55 9.70 22.27 0.22 -4.34 16 17 C 0.46 22.62 7.47 87.66 0.65 23.27 16 18 O -0.62 -33.59 14.35 8.10 0.12 -33.47 16 19 C -0.14 -5.30 4.11 29.85 0.12 -5.17 16 20 C 0.13 4.57 2.79 30.59 0.09 4.66 16 21 H 0.08 3.04 7.88 -2.39 -0.02 3.02 16 22 O -0.57 -20.41 12.03 -137.83 -1.66 -22.07 16 23 C 0.04 1.02 6.49 86.30 0.56 1.58 16 24 N -0.86 -19.75 9.62 -186.72 -1.80 -21.54 16 25 H 0.27 13.38 8.32 -92.71 -0.77 12.61 16 26 H 0.10 5.11 5.43 -2.39 -0.01 5.10 16 27 H 0.03 1.82 7.44 -2.38 -0.02 1.80 16 28 H 0.10 4.64 7.40 -2.91 -0.02 4.62 16 29 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 30 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 31 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 32 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.09 3.44 8.04 -2.39 -0.02 3.42 16 34 H 0.10 3.42 7.79 -2.39 -0.02 3.41 16 35 H 0.38 10.68 9.05 -74.06 -0.67 10.01 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.35 8.01 8.38 -89.70 -0.75 7.25 16 39 H 0.35 6.11 9.08 -89.69 -0.81 5.30 16 Total: -1.00 -65.52 329.70 0.18 -65.33 By element: Atomic # 1 Polarization: 51.09 SS G_CDS: -1.15 Total: 49.94 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 3.99 Total: -7.83 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -3.15 Total: -91.75 kcal Atomic # 8 Polarization: -54.00 SS G_CDS: -1.54 Total: -55.54 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Total: -65.52 0.18 -65.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703398032.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.263 kcal (2) G-P(sol) polarization free energy of solvation -65.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds