Wall clock time and date at job start Tue Mar 31 2020 00:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86794 * 120.00104 * 2 1 4 4 H 1.48493 * 109.47240 * 239.99551 * 3 2 1 5 5 H 1.48498 * 109.47032 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46900 * 119.99711 * 3 2 1 7 7 C 1.38951 * 119.99505 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99745 * 156.97070 * 7 2 1 9 9 N 1.37099 * 120.00501 * 336.96287 * 7 2 1 10 10 C 1.46497 * 120.00250 * 325.58320 * 9 7 2 11 11 C 1.50701 * 109.46771 * 266.59125 * 10 9 7 12 12 C 1.38242 * 119.99531 * 264.50977 * 11 10 9 13 13 C 1.38238 * 119.99669 * 179.76720 * 12 11 10 14 14 C 1.38229 * 120.00044 * 0.50769 * 13 12 11 15 15 C 1.38234 * 120.00177 * 359.74950 * 14 13 12 16 16 C 1.38234 * 120.00545 * 84.78803 * 11 10 9 17 17 C 1.34771 * 119.99808 * 145.57184 * 9 7 2 18 18 O 1.21301 * 119.99971 * 180.02562 * 17 9 7 19 19 C 1.50697 * 120.00155 * 0.02562 * 17 9 7 20 20 C 1.53006 * 109.47290 * 180.02562 * 19 17 9 21 21 H 1.08999 * 109.47410 * 54.99614 * 20 19 17 22 22 O 1.42904 * 109.46500 * 295.00050 * 20 19 17 23 23 C 1.53000 * 109.47308 * 175.00241 * 20 19 17 24 24 N 1.46899 * 109.46958 * 184.99706 * 23 20 19 25 25 H 0.96996 * 119.99803 * 0.02562 * 1 2 3 26 26 H 1.09008 * 109.47378 * 26.58477 * 10 9 7 27 27 H 1.08996 * 109.47679 * 146.58667 * 10 9 7 28 28 H 1.07998 * 120.00165 * 359.97438 * 12 11 10 29 29 H 1.08002 * 119.99793 * 180.23395 * 13 12 11 30 30 H 1.08002 * 119.99993 * 179.72803 * 14 13 12 31 31 H 1.08002 * 120.00139 * 179.97438 * 15 14 13 32 32 H 1.07999 * 120.00077 * 359.97438 * 16 11 10 33 33 H 1.08997 * 109.47227 * 60.00053 * 19 17 9 34 34 H 1.09004 * 109.47246 * 299.99556 * 19 17 9 35 35 H 0.96696 * 113.99785 * 299.99423 * 22 20 19 36 36 H 1.09001 * 109.46971 * 304.99620 * 23 20 19 37 37 H 1.09000 * 109.47345 * 64.99528 * 23 20 19 38 38 H 1.00900 * 110.99993 * 179.97438 * 24 23 20 39 39 H 1.00896 * 111.00060 * 303.95455 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0242 -1.2409 -0.3653 9 7 1.4053 -2.3432 0.4657 10 6 0.4556 -2.2673 1.5785 11 6 1.1819 -2.5125 2.8761 12 6 1.2041 -3.7803 3.4268 13 6 1.8743 -4.0062 4.6146 14 6 2.5134 -2.9622 5.2569 15 6 2.4866 -1.6934 4.7089 16 6 1.8209 -1.4685 3.5185 17 6 1.6855 -3.5334 -0.1011 18 8 1.1513 -4.5417 0.3101 19 6 2.6627 -3.6115 -1.2457 20 6 2.7992 -5.0657 -1.7015 21 1 1.8141 -5.4648 -1.9430 22 8 3.3831 -5.8407 -0.6523 23 6 3.6935 -5.1298 -2.9412 24 7 3.7282 -6.5078 -3.4492 25 1 -0.4850 0.8400 -0.0004 26 1 -0.0015 -1.2780 1.5994 27 1 -0.3190 -3.0228 1.4474 28 1 0.7007 -4.5949 2.9274 29 1 1.8949 -4.9974 5.0429 30 1 3.0333 -3.1378 6.1871 31 1 2.9856 -0.8777 5.2111 32 1 1.8001 -0.4773 3.0904 33 1 3.6341 -3.2396 -0.9201 34 1 2.3003 -3.0038 -2.0750 35 1 4.2630 -5.5415 -0.3854 36 1 3.2953 -4.4687 -3.7110 37 1 4.7030 -4.8141 -2.6778 38 1 4.3125 -6.5764 -4.2689 39 1 4.0328 -7.1496 -2.7328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703398034.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:05 Heat of formation + Delta-G solvation = -61.112381 kcal Electronic energy + Delta-G solvation = -22098.336418 eV Core-core repulsion = 18812.642134 eV Total energy + Delta-G solvation = -3285.694284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.15939 -38.25190 -36.97093 -34.75766 -33.50373 -31.89498 -31.13422 -30.23965 -29.96166 -26.21018 -25.26687 -23.93008 -21.87729 -21.33031 -20.54150 -19.07835 -17.20572 -16.42905 -15.96227 -15.79303 -15.55870 -15.28983 -14.77368 -14.49949 -14.22334 -14.04375 -13.96794 -13.35985 -12.85363 -12.75083 -12.57987 -12.22140 -12.02189 -11.95822 -11.46551 -11.33271 -11.03744 -10.92067 -10.71579 -10.56148 -10.39077 -10.29371 -10.10041 -9.63616 -9.18111 -8.63510 -8.47893 -8.28871 -8.01573 -7.57562 -6.44956 -4.09354 1.97990 2.04043 3.05876 3.16036 3.17576 3.92166 4.04578 4.32425 4.51120 4.87055 4.92556 4.98119 5.35900 5.37817 5.45577 5.51503 5.61272 5.63269 5.87046 5.88189 5.97804 6.14464 6.21449 6.32032 6.41731 6.56699 6.63753 6.66524 6.81882 7.07264 7.10332 7.16616 7.18911 7.37946 7.48430 7.49414 7.66425 7.88369 8.09098 8.31473 9.03407 9.50543 9.94951 10.57041 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.007384 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.723604 B = 3791.141805 C = 5443.373506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.044 3.956 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.437 5.437 10 C 0.146 3.854 11 C -0.078 4.078 12 C -0.100 4.100 13 C -0.132 4.132 14 C -0.136 4.136 15 C -0.134 4.134 16 C -0.098 4.098 17 C 0.476 3.524 18 O -0.585 6.585 19 C -0.151 4.151 20 C 0.125 3.875 21 H 0.108 0.892 22 O -0.545 6.545 23 C 0.029 3.971 24 N -0.847 5.847 25 H 0.271 0.729 26 H 0.114 0.886 27 H 0.062 0.938 28 H 0.124 0.876 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.358 0.642 36 H 0.080 0.920 37 H 0.026 0.974 38 H 0.336 0.664 39 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.008 -2.928 1.235 7.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.162 4.162 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.105 0.895 9 N -0.156 5.156 10 C 0.023 3.977 11 C -0.079 4.079 12 C -0.119 4.119 13 C -0.150 4.150 14 C -0.154 4.154 15 C -0.152 4.152 16 C -0.116 4.116 17 C 0.265 3.735 18 O -0.470 6.470 19 C -0.192 4.192 20 C 0.065 3.935 21 H 0.126 0.874 22 O -0.348 6.348 23 C -0.102 4.102 24 N -0.377 5.377 25 H 0.081 0.919 26 H 0.131 0.869 27 H 0.080 0.920 28 H 0.142 0.858 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.203 0.797 36 H 0.098 0.902 37 H 0.044 0.956 38 H 0.147 0.853 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.192 -3.496 1.257 6.384 hybrid contribution 2.153 1.561 0.157 2.664 sum 7.345 -1.935 1.414 7.726 Atomic orbital electron populations 1.69933 1.06211 1.27982 1.45013 1.25274 0.94971 0.99696 0.96246 0.86329 0.79586 0.81574 0.79254 1.19741 1.20820 1.19723 1.19320 0.97479 0.85874 1.43780 0.89536 1.43373 1.39703 1.05629 1.26887 1.20391 0.90945 1.04657 0.81690 1.20644 0.97734 0.92874 0.96661 1.21259 0.98685 0.96992 0.94935 1.21046 0.99263 0.98375 0.96356 1.20953 1.01099 0.93420 0.99918 1.21039 1.00709 0.96702 0.96730 1.21107 0.96739 0.99401 0.94393 1.20173 0.84980 0.83896 0.84441 1.90559 1.55335 1.35350 1.65717 1.22078 1.00360 0.97108 0.99626 1.21749 0.97166 0.90280 0.84264 0.87408 1.86716 1.35124 1.57339 1.55630 1.22568 0.98278 0.90651 0.98681 1.58604 1.61432 1.06695 1.10979 0.91866 0.86857 0.92006 0.85848 0.87021 0.87197 0.87033 0.86264 0.90412 0.88758 0.79665 0.90204 0.95623 0.85277 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.69 11.39 55.50 0.63 -21.05 16 2 C 0.04 1.07 4.91 -17.47 -0.09 0.98 16 3 Si 0.91 18.65 29.61 -169.99 -5.03 13.61 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.34 -8.14 8.68 -14.93 -0.13 -8.27 16 8 H 0.09 2.00 7.00 -52.49 -0.37 1.64 16 9 N -0.44 -10.64 2.53 -116.10 -0.29 -10.93 16 10 C 0.15 3.48 5.07 -5.20 -0.03 3.45 16 11 C -0.08 -1.67 5.44 -104.62 -0.57 -2.24 16 12 C -0.10 -2.02 9.62 -39.58 -0.38 -2.40 16 13 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 14 C -0.14 -2.20 10.05 -39.59 -0.40 -2.60 16 15 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 16 C -0.10 -1.95 9.72 -39.58 -0.38 -2.34 16 17 C 0.48 11.26 7.49 -10.99 -0.08 11.18 16 18 O -0.59 -15.11 14.73 -8.89 -0.13 -15.24 16 19 C -0.15 -2.85 4.04 -27.88 -0.11 -2.96 16 20 C 0.13 2.13 2.75 -26.73 -0.07 2.06 16 21 H 0.11 2.14 7.96 -51.93 -0.41 1.72 16 22 O -0.55 -9.54 12.09 -49.66 -0.60 -10.14 16 23 C 0.03 0.39 6.46 -3.82 -0.02 0.37 16 24 N -0.85 -10.47 9.62 -10.37 -0.10 -10.57 16 25 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 26 H 0.11 2.83 5.37 -51.92 -0.28 2.55 16 27 H 0.06 1.52 7.43 -51.93 -0.39 1.14 16 28 H 0.12 2.60 7.79 -52.49 -0.41 2.19 16 29 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 33 H 0.08 1.36 7.65 -51.93 -0.40 0.97 16 34 H 0.09 1.76 8.10 -51.93 -0.42 1.34 16 35 H 0.36 4.93 9.04 45.56 0.41 5.35 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.34 3.29 9.08 -39.29 -0.36 2.93 16 39 H 0.35 4.18 8.55 -39.29 -0.34 3.84 16 LS Contribution 330.42 15.07 4.98 4.98 Total: -1.00 -29.20 330.42 -8.23 -37.44 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -4.62 Total: 20.07 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -3.06 Total: -8.17 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.24 Total: -42.55 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.73 Total: -25.38 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.20 -8.23 -37.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703398034.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.675 kcal (2) G-P(sol) polarization free energy of solvation -29.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds