Wall clock time and date at job start Tue Mar 31 2020 00:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86794 * 120.00104 * 2 1 4 4 H 1.48493 * 109.47240 * 239.99551 * 3 2 1 5 5 H 1.48498 * 109.47032 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46900 * 119.99711 * 3 2 1 7 7 C 1.38951 * 119.99505 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99745 * 156.97070 * 7 2 1 9 9 N 1.37099 * 120.00501 * 336.96287 * 7 2 1 10 10 C 1.46497 * 120.00250 * 325.58320 * 9 7 2 11 11 C 1.50701 * 109.46771 * 266.59125 * 10 9 7 12 12 C 1.38242 * 119.99531 * 264.50977 * 11 10 9 13 13 C 1.38238 * 119.99669 * 179.76720 * 12 11 10 14 14 C 1.38229 * 120.00044 * 0.50769 * 13 12 11 15 15 C 1.38234 * 120.00177 * 359.74950 * 14 13 12 16 16 C 1.38234 * 120.00545 * 84.78803 * 11 10 9 17 17 C 1.34771 * 119.99808 * 145.57184 * 9 7 2 18 18 O 1.21301 * 119.99971 * 180.02562 * 17 9 7 19 19 C 1.50697 * 120.00155 * 0.02562 * 17 9 7 20 20 C 1.53006 * 109.47290 * 180.02562 * 19 17 9 21 21 H 1.08999 * 109.47410 * 54.99614 * 20 19 17 22 22 O 1.42904 * 109.46500 * 295.00050 * 20 19 17 23 23 C 1.53000 * 109.47308 * 175.00241 * 20 19 17 24 24 N 1.46899 * 109.46958 * 184.99706 * 23 20 19 25 25 H 0.96996 * 119.99803 * 0.02562 * 1 2 3 26 26 H 1.09008 * 109.47378 * 26.58477 * 10 9 7 27 27 H 1.08996 * 109.47679 * 146.58667 * 10 9 7 28 28 H 1.07998 * 120.00165 * 359.97438 * 12 11 10 29 29 H 1.08002 * 119.99793 * 180.23395 * 13 12 11 30 30 H 1.08002 * 119.99993 * 179.72803 * 14 13 12 31 31 H 1.08002 * 120.00139 * 179.97438 * 15 14 13 32 32 H 1.07999 * 120.00077 * 359.97438 * 16 11 10 33 33 H 1.08997 * 109.47227 * 60.00053 * 19 17 9 34 34 H 1.09004 * 109.47246 * 299.99556 * 19 17 9 35 35 H 0.96696 * 113.99785 * 299.99423 * 22 20 19 36 36 H 1.09001 * 109.46971 * 304.99620 * 23 20 19 37 37 H 1.09000 * 109.47345 * 64.99528 * 23 20 19 38 38 H 1.00900 * 110.99993 * 179.97438 * 24 23 20 39 39 H 1.00896 * 111.00060 * 303.95455 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0242 -1.2409 -0.3653 9 7 1.4053 -2.3432 0.4657 10 6 0.4556 -2.2673 1.5785 11 6 1.1819 -2.5125 2.8761 12 6 1.2041 -3.7803 3.4268 13 6 1.8743 -4.0062 4.6146 14 6 2.5134 -2.9622 5.2569 15 6 2.4866 -1.6934 4.7089 16 6 1.8209 -1.4685 3.5185 17 6 1.6855 -3.5334 -0.1011 18 8 1.1513 -4.5417 0.3101 19 6 2.6627 -3.6115 -1.2457 20 6 2.7992 -5.0657 -1.7015 21 1 1.8141 -5.4648 -1.9430 22 8 3.3831 -5.8407 -0.6523 23 6 3.6935 -5.1298 -2.9412 24 7 3.7282 -6.5078 -3.4492 25 1 -0.4850 0.8400 -0.0004 26 1 -0.0015 -1.2780 1.5994 27 1 -0.3190 -3.0228 1.4474 28 1 0.7007 -4.5949 2.9274 29 1 1.8949 -4.9974 5.0429 30 1 3.0333 -3.1378 6.1871 31 1 2.9856 -0.8777 5.2111 32 1 1.8001 -0.4773 3.0904 33 1 3.6341 -3.2396 -0.9201 34 1 2.3003 -3.0038 -2.0750 35 1 4.2630 -5.5415 -0.3854 36 1 3.2953 -4.4687 -3.7110 37 1 4.7030 -4.8141 -2.6778 38 1 4.3125 -6.5764 -4.2689 39 1 4.0328 -7.1496 -2.7328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703398034.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:04 Heat of formation + Delta-G solvation = -81.489523 kcal Electronic energy + Delta-G solvation = -22099.220037 eV Core-core repulsion = 18812.642134 eV Total energy + Delta-G solvation = -3286.577903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.86003 -39.74241 -38.43144 -36.60656 -34.63778 -33.68208 -32.78203 -31.69351 -31.43138 -27.80482 -26.95493 -25.48621 -23.34097 -22.66007 -22.03782 -20.91501 -18.89840 -17.96842 -17.35267 -17.19029 -17.08293 -16.82825 -16.34066 -16.03926 -15.76532 -15.66742 -15.37522 -14.74138 -14.42594 -14.22081 -13.97989 -13.75326 -13.58277 -13.23137 -13.15105 -13.06772 -12.60934 -12.57333 -12.45480 -12.16036 -11.91076 -11.78068 -11.69720 -11.09110 -10.90737 -10.30971 -9.74775 -9.59898 -9.55551 -9.46832 -8.29953 -6.00810 0.51498 0.57529 1.42321 1.48979 1.56617 2.10537 2.32502 2.79126 3.09313 3.15338 3.57995 3.71296 4.02703 4.06446 4.13918 4.19432 4.21890 4.24980 4.36929 4.50244 4.55670 4.72632 4.75502 4.80678 4.87836 4.96931 5.16057 5.22870 5.23701 5.29286 5.49725 5.64575 5.66240 5.90066 6.04019 6.21445 6.21706 6.43047 6.63293 6.92074 7.15818 7.64653 8.09827 8.73187 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.007384 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.723604 B = 3791.141805 C = 5443.373506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.007 3.993 3 Si 0.972 3.028 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.350 4.350 8 H 0.098 0.902 9 N -0.446 5.446 10 C 0.152 3.848 11 C -0.100 4.100 12 C -0.120 4.120 13 C -0.128 4.128 14 C -0.122 4.122 15 C -0.126 4.126 16 C -0.114 4.114 17 C 0.458 3.542 18 O -0.618 6.618 19 C -0.140 4.140 20 C 0.135 3.865 21 H 0.072 0.928 22 O -0.563 6.563 23 C 0.042 3.958 24 N -0.856 5.856 25 H 0.272 0.728 26 H 0.097 0.903 27 H 0.032 0.968 28 H 0.100 0.900 29 H 0.140 0.860 30 H 0.155 0.845 31 H 0.146 0.854 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.376 0.624 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.353 0.647 39 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.982 -2.307 2.259 10.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.196 4.196 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.477 4.477 8 H 0.116 0.884 9 N -0.164 5.164 10 C 0.029 3.971 11 C -0.101 4.101 12 C -0.139 4.139 13 C -0.146 4.146 14 C -0.140 4.140 15 C -0.144 4.144 16 C -0.132 4.132 17 C 0.248 3.752 18 O -0.504 6.504 19 C -0.180 4.180 20 C 0.075 3.925 21 H 0.090 0.910 22 O -0.368 6.368 23 C -0.090 4.090 24 N -0.389 5.389 25 H 0.081 0.919 26 H 0.114 0.886 27 H 0.051 0.949 28 H 0.118 0.882 29 H 0.158 0.842 30 H 0.173 0.827 31 H 0.164 0.836 32 H 0.125 0.875 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.223 0.777 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.166 0.834 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.193 -2.875 2.267 8.974 hybrid contribution 1.184 1.308 -0.088 1.766 sum 9.377 -1.568 2.179 9.754 Atomic orbital electron populations 1.70046 1.07852 1.28742 1.46128 1.26074 0.95485 1.02616 0.95470 0.85313 0.78247 0.77212 0.79672 1.18555 1.21173 1.19092 1.19651 0.97949 0.86018 1.44062 0.88404 1.43626 1.39489 1.06170 1.27140 1.20177 0.90914 1.02455 0.83587 1.20436 0.99299 0.94230 0.96141 1.21163 1.00231 0.95866 0.96609 1.21371 0.97906 1.00380 0.94900 1.21429 0.99568 0.92211 1.00797 1.21409 0.99310 0.98387 0.95274 1.21087 0.97936 0.98304 0.95921 1.21055 0.85567 0.83282 0.85277 1.90527 1.56733 1.36275 1.66880 1.22042 0.99681 0.98731 0.97581 1.21536 0.96666 0.88463 0.85873 0.91035 1.86668 1.36490 1.57587 1.56104 1.22361 0.98449 0.91431 0.96726 1.58535 1.62367 1.06185 1.11772 0.91865 0.88553 0.94931 0.88178 0.84177 0.82748 0.83641 0.87479 0.88509 0.88625 0.77711 0.89734 0.93211 0.83355 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.65 11.39 21.66 0.25 -46.40 16 2 C 0.01 0.33 4.91 84.93 0.42 0.74 16 3 Si 0.97 37.88 29.61 68.60 2.03 39.91 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.29 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 7 C -0.35 -17.09 8.68 84.04 0.73 -16.36 16 8 H 0.10 4.46 7.00 -2.91 -0.02 4.44 16 9 N -0.45 -22.57 2.53 -639.60 -1.62 -24.19 16 10 C 0.15 7.72 5.07 85.63 0.43 8.15 16 11 C -0.10 -4.44 5.44 -19.86 -0.11 -4.55 16 12 C -0.12 -4.96 9.62 22.27 0.21 -4.75 16 13 C -0.13 -4.17 10.05 22.27 0.22 -3.95 16 14 C -0.12 -3.47 10.05 22.27 0.22 -3.25 16 15 C -0.13 -3.95 10.05 22.27 0.22 -3.73 16 16 C -0.11 -4.51 9.72 22.27 0.22 -4.30 16 17 C 0.46 22.48 7.49 87.66 0.66 23.14 16 18 O -0.62 -33.66 14.73 10.70 0.16 -33.50 16 19 C -0.14 -5.29 4.04 29.85 0.12 -5.17 16 20 C 0.13 4.58 2.75 30.60 0.08 4.66 16 21 H 0.07 2.95 7.96 -2.39 -0.02 2.93 16 22 O -0.56 -19.53 12.09 -135.18 -1.63 -21.16 16 23 C 0.04 1.03 6.46 86.30 0.56 1.59 16 24 N -0.86 -19.77 9.62 -186.72 -1.80 -21.57 16 25 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 26 H 0.10 5.15 5.37 -2.38 -0.01 5.14 16 27 H 0.03 1.76 7.43 -2.39 -0.02 1.74 16 28 H 0.10 4.52 7.79 -2.91 -0.02 4.50 16 29 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 30 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 32 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 33 H 0.10 3.26 7.65 -2.39 -0.02 3.24 16 34 H 0.10 3.57 8.10 -2.38 -0.02 3.56 16 35 H 0.38 9.83 9.04 -74.06 -0.67 9.16 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.35 6.11 9.08 -89.69 -0.81 5.30 16 39 H 0.35 7.89 8.55 -89.70 -0.77 7.12 16 Total: -1.00 -66.15 330.42 0.22 -65.93 By element: Atomic # 1 Polarization: 49.90 SS G_CDS: -1.16 Total: 48.74 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 3.99 Total: -7.76 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -3.17 Total: -92.15 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -1.48 Total: -54.67 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Total: -66.15 0.22 -65.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703398034.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.558 kcal (2) G-P(sol) polarization free energy of solvation -66.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds