Wall clock time and date at job start Mon Mar 30 2020 23:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50704 * 119.97113 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.46899 * 269.97898 * 8 7 6 10 10 O 1.20824 * 120.00719 * 0.02562 * 9 8 7 11 11 O 1.34238 * 119.99963 * 180.02562 * 9 8 7 12 12 C 1.45194 * 117.00022 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47149 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47574 * 179.97438 * 13 12 11 15 15 C 1.50693 * 109.47479 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00019 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00073 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99788 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00021 * 0.02562 * 17 15 14 20 20 H 1.48492 * 109.47465 * 89.99562 * 19 17 15 21 21 H 1.48497 * 109.46814 * 209.99827 * 19 17 15 22 22 H 1.48503 * 109.46787 * 329.99290 * 19 17 15 23 23 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 24 24 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 26 26 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 27 27 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 28 28 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 29 29 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 30 30 H 1.09003 * 109.47240 * 29.97765 * 8 7 6 31 31 H 1.09001 * 109.47227 * 149.97786 * 8 7 6 32 32 H 1.09003 * 109.47322 * 299.99532 * 12 11 9 33 33 H 1.08998 * 109.47396 * 59.99960 * 12 11 9 34 34 H 1.09002 * 109.47345 * 300.00252 * 13 12 11 35 35 H 1.09009 * 109.47018 * 59.99500 * 13 12 11 36 36 H 1.08998 * 109.46971 * 300.00591 * 14 13 12 37 37 H 1.09005 * 109.46478 * 60.00109 * 14 13 12 38 38 H 0.97003 * 119.99898 * 180.02562 * 18 17 15 39 39 H 1.08006 * 120.02917 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0002 9 6 6.0624 2.6249 -1.4206 10 8 5.2785 2.5829 -2.3391 11 8 7.3803 2.6953 -1.6658 12 6 7.7914 2.7177 -3.0582 13 6 9.3171 2.7999 -3.1382 14 6 9.7504 2.8228 -4.6054 15 6 11.2531 2.9043 -4.6842 16 1 11.8404 2.9361 -3.7784 17 6 11.8782 2.9372 -5.9127 18 7 13.1896 3.0089 -5.9814 19 14 10.8625 2.8815 -7.4794 20 1 10.5178 4.2647 -7.8954 21 1 11.6465 2.2221 -8.5543 22 1 9.6156 2.1132 -7.2337 23 6 3.4311 1.2849 -0.0001 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2128 2.3203 -0.0106 28 1 1.3339 4.5114 0.0011 29 1 3.7922 4.6381 0.0002 30 1 5.8756 3.5067 0.5138 31 1 5.9714 1.7293 0.5143 32 1 7.4497 1.8083 -3.5526 33 1 7.3548 3.5858 -3.5521 34 1 9.6585 3.7094 -2.6439 35 1 9.7541 1.9320 -2.6442 36 1 9.4091 1.9131 -5.0993 37 1 9.3134 3.6905 -5.0997 38 1 13.6294 3.0324 -6.8457 39 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730422762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:34 Heat of formation + Delta-G solvation = -114.253122 kcal Electronic energy + Delta-G solvation = -20231.639641 eV Core-core repulsion = 16911.348250 eV Total energy + Delta-G solvation = -3320.291391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.68270 -40.03153 -37.91554 -36.42979 -34.07052 -33.01019 -31.82221 -30.81676 -28.56077 -27.63547 -27.07180 -23.35538 -22.83189 -21.91560 -20.61636 -20.14919 -18.07023 -17.51876 -16.84364 -16.78295 -16.39392 -16.12183 -16.07060 -15.84787 -14.66387 -14.33797 -14.16523 -13.92739 -13.55747 -13.20837 -12.74652 -12.70660 -12.65721 -12.34292 -12.03681 -11.92751 -11.80777 -11.38815 -11.14170 -11.04541 -10.94490 -10.54623 -10.41817 -9.99865 -9.80022 -9.72171 -9.24548 -9.13157 -8.56410 -8.46371 -6.06693 -4.05637 0.96795 1.20188 2.30743 2.80405 2.98262 3.30318 3.37910 3.41676 3.57499 4.30965 4.43420 4.48377 4.71079 4.74403 4.78530 4.86339 4.95581 5.04870 5.10272 5.16839 5.26648 5.29938 5.40242 5.47672 5.51290 5.73190 5.88164 5.99768 6.13861 6.28197 6.35288 6.39952 6.46008 6.68942 6.82222 7.09786 7.21921 7.33161 7.73006 7.90418 8.50170 8.97635 9.54894 11.06444 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033840 B = 0.002591 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.235767 B =10805.908055 C =11079.248150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.126 3.874 4 C -0.206 4.206 5 C -0.080 4.080 6 C -0.139 4.139 7 C -0.035 4.035 8 C -0.076 4.076 9 C 0.458 3.542 10 O -0.504 6.504 11 O -0.357 6.357 12 C 0.066 3.934 13 C -0.101 4.101 14 C -0.011 4.011 15 C -0.521 4.521 16 H 0.074 0.926 17 C 0.067 3.933 18 N -0.902 5.902 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.134 4.134 24 H 0.099 0.901 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.019 0.981 37 H 0.014 0.986 38 H 0.264 0.736 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.023 -1.803 15.756 30.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.081 3.919 4 C -0.225 4.225 5 C -0.098 4.098 6 C -0.157 4.157 7 C -0.035 4.035 8 C -0.113 4.113 9 C 0.300 3.700 10 O -0.392 6.392 11 O -0.273 6.273 12 C -0.007 4.007 13 C -0.139 4.139 14 C -0.048 4.048 15 C -0.559 4.559 16 H 0.092 0.908 17 C -0.135 4.135 18 N -0.540 5.540 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.153 4.153 24 H 0.118 0.882 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -25.992 -2.007 15.312 30.234 hybrid contribution -0.729 0.144 -1.137 1.358 sum -26.721 -1.863 14.175 30.306 Atomic orbital electron populations 1.23052 0.78391 1.03965 1.01320 1.86079 1.21380 1.26908 1.88774 1.18922 0.92164 0.84205 0.96604 1.21235 0.99973 0.92451 1.08833 1.20887 0.94423 0.97036 0.97445 1.20940 0.93897 0.97877 1.02990 1.19057 0.93471 0.92803 0.98201 1.20316 0.91965 1.07019 0.92044 1.23398 0.81308 0.73150 0.92147 1.90686 1.56891 1.44835 1.46768 1.86494 1.24775 1.83125 1.32945 1.23488 0.97997 1.02061 0.77127 1.21561 0.89049 1.02783 1.00513 1.19523 0.97776 0.96684 0.90857 1.21054 0.89469 1.50971 0.94419 0.90783 1.25020 0.94826 0.94479 0.99130 1.69910 1.08149 1.50745 1.25219 0.86779 0.80725 0.78667 0.83152 1.20219 1.21287 1.18973 1.20245 0.91536 0.98053 1.05430 0.88218 0.92676 0.92624 0.85519 0.85594 0.85703 0.86406 0.86499 0.91556 0.91577 0.91530 0.91503 0.96286 0.96736 0.92654 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.29 10.50 -19.44 -0.20 -3.49 16 3 C 0.13 1.38 6.69 -39.22 -0.26 1.12 16 4 C -0.21 -1.93 9.04 -39.43 -0.36 -2.28 16 5 C -0.08 -0.73 10.04 -39.60 -0.40 -1.13 16 6 C -0.14 -1.39 9.70 -39.56 -0.38 -1.77 16 7 C -0.04 -0.38 4.37 -104.65 -0.46 -0.84 16 8 C -0.08 -0.74 5.94 -29.04 -0.17 -0.92 16 9 C 0.46 6.60 7.95 36.00 0.29 6.88 16 10 O -0.50 -8.86 15.78 -18.75 -0.30 -9.16 16 11 O -0.36 -5.67 10.22 -39.28 -0.40 -6.07 16 12 C 0.07 1.17 5.47 37.16 0.20 1.37 16 13 C -0.10 -2.02 5.53 -26.73 -0.15 -2.17 16 14 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 15 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 16 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 19 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 23 C -0.13 -1.52 9.64 -39.44 -0.38 -1.90 16 24 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.26 7.67 -51.93 -0.40 -0.14 16 26 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 27 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 28 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.12 0.86 8.08 -51.93 -0.42 0.45 16 31 H 0.12 0.90 8.08 -51.93 -0.42 0.48 16 32 H 0.07 1.17 8.13 -51.93 -0.42 0.74 16 33 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 36 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 37 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 335.76 15.07 5.06 5.06 Total: -1.00 -34.06 335.76 -7.06 -41.11 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -5.70 Total: -3.35 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -1.62 Total: -14.20 kcal Atomic # 7 Polarization: -27.83 SS G_CDS: 0.77 Total: -27.06 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.90 Total: -18.72 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.06 -7.06 -41.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730422762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.140 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds