Wall clock time and date at job start Mon Mar 30 2020 23:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50704 * 119.97113 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.46899 * 269.97898 * 8 7 6 10 10 O 1.20824 * 120.00719 * 0.02562 * 9 8 7 11 11 O 1.34238 * 119.99963 * 180.02562 * 9 8 7 12 12 C 1.45194 * 117.00022 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47149 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47574 * 179.97438 * 13 12 11 15 15 C 1.50693 * 109.47479 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00019 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00073 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99788 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00021 * 0.02562 * 17 15 14 20 20 H 1.48492 * 109.47465 * 89.99562 * 19 17 15 21 21 H 1.48497 * 109.46814 * 209.99827 * 19 17 15 22 22 H 1.48503 * 109.46787 * 329.99290 * 19 17 15 23 23 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 24 24 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 26 26 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 27 27 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 28 28 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 29 29 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 30 30 H 1.09003 * 109.47240 * 29.97765 * 8 7 6 31 31 H 1.09001 * 109.47227 * 149.97786 * 8 7 6 32 32 H 1.09003 * 109.47322 * 299.99532 * 12 11 9 33 33 H 1.08998 * 109.47396 * 59.99960 * 12 11 9 34 34 H 1.09002 * 109.47345 * 300.00252 * 13 12 11 35 35 H 1.09009 * 109.47018 * 59.99500 * 13 12 11 36 36 H 1.08998 * 109.46971 * 300.00591 * 14 13 12 37 37 H 1.09005 * 109.46478 * 60.00109 * 14 13 12 38 38 H 0.97003 * 119.99898 * 180.02562 * 18 17 15 39 39 H 1.08006 * 120.02917 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0002 9 6 6.0624 2.6249 -1.4206 10 8 5.2785 2.5829 -2.3391 11 8 7.3803 2.6953 -1.6658 12 6 7.7914 2.7177 -3.0582 13 6 9.3171 2.7999 -3.1382 14 6 9.7504 2.8228 -4.6054 15 6 11.2531 2.9043 -4.6842 16 1 11.8404 2.9361 -3.7784 17 6 11.8782 2.9372 -5.9127 18 7 13.1896 3.0089 -5.9814 19 14 10.8625 2.8815 -7.4794 20 1 10.5178 4.2647 -7.8954 21 1 11.6465 2.2221 -8.5543 22 1 9.6156 2.1132 -7.2337 23 6 3.4311 1.2849 -0.0001 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2128 2.3203 -0.0106 28 1 1.3339 4.5114 0.0011 29 1 3.7922 4.6381 0.0002 30 1 5.8756 3.5067 0.5138 31 1 5.9714 1.7293 0.5143 32 1 7.4497 1.8083 -3.5526 33 1 7.3548 3.5858 -3.5521 34 1 9.6585 3.7094 -2.6439 35 1 9.7541 1.9320 -2.6442 36 1 9.4091 1.9131 -5.0993 37 1 9.3134 3.6905 -5.0997 38 1 13.6294 3.0324 -6.8457 39 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730422762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:33 Heat of formation + Delta-G solvation = -134.216095 kcal Electronic energy + Delta-G solvation = -20232.505300 eV Core-core repulsion = 16911.348250 eV Total energy + Delta-G solvation = -3321.157050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.67269 -40.91976 -38.69099 -37.66645 -35.92549 -33.99934 -33.64323 -31.51102 -29.81774 -28.69144 -27.95499 -24.99840 -23.59573 -22.92024 -22.07877 -21.43287 -19.04509 -18.75585 -18.63707 -17.83511 -17.17735 -17.13621 -16.92723 -16.62668 -16.28061 -15.82110 -15.15718 -14.83372 -14.71560 -14.44561 -14.26228 -14.00301 -13.73912 -13.44341 -13.06938 -12.86586 -12.79360 -12.58673 -12.52896 -12.11684 -12.02372 -11.98480 -11.78997 -11.76761 -11.45933 -11.38346 -11.35059 -10.77931 -9.87951 -9.18311 -8.30593 -6.35429 0.21852 0.46897 1.19138 1.36269 1.37926 1.49673 1.73348 2.35213 2.35671 2.79818 3.04424 3.54398 3.84584 3.85159 4.00069 4.04529 4.08938 4.18900 4.30288 4.35904 4.37842 4.38891 4.50289 4.60523 4.71500 4.72157 4.74140 4.78582 4.96275 5.03107 5.29137 5.34992 5.43769 5.48597 5.53574 5.55827 5.62562 5.78192 6.25548 6.43644 6.70623 6.74811 7.28984 8.85874 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033840 B = 0.002591 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.235767 B =10805.908055 C =11079.248150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.109 3.891 4 C -0.209 4.209 5 C -0.084 4.084 6 C -0.151 4.151 7 C -0.048 4.048 8 C -0.068 4.068 9 C 0.458 3.542 10 O -0.538 6.538 11 O -0.359 6.359 12 C 0.075 3.925 13 C -0.092 4.092 14 C -0.010 4.010 15 C -0.533 4.533 16 H 0.036 0.964 17 C 0.005 3.995 18 N -0.949 5.949 19 Si 0.950 3.050 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.248 1.248 23 C -0.157 4.157 24 H 0.117 0.883 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.150 0.850 28 H 0.152 0.848 29 H 0.140 0.860 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.267 0.733 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.600 -1.361 15.921 32.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.064 3.936 4 C -0.227 4.227 5 C -0.102 4.102 6 C -0.169 4.169 7 C -0.048 4.048 8 C -0.105 4.105 9 C 0.303 3.697 10 O -0.428 6.428 11 O -0.275 6.275 12 C 0.001 3.999 13 C -0.130 4.130 14 C -0.048 4.048 15 C -0.571 4.571 16 H 0.055 0.945 17 C -0.193 4.193 18 N -0.589 5.589 19 Si 0.773 3.227 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.171 1.171 23 C -0.176 4.176 24 H 0.135 0.865 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.167 0.833 28 H 0.170 0.830 29 H 0.158 0.842 30 H 0.165 0.835 31 H 0.157 0.843 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -28.587 -1.568 15.507 32.560 hybrid contribution 0.049 -0.008 -1.082 1.083 sum -28.538 -1.576 14.426 32.016 Atomic orbital electron populations 1.23333 0.76412 1.05523 1.02277 1.86045 1.23556 1.27011 1.88821 1.19157 0.92399 0.85008 0.97026 1.21548 1.01198 0.92036 1.07941 1.21267 0.94482 0.97995 0.96410 1.21256 0.94562 0.98290 1.02773 1.19210 0.93971 0.92935 0.98728 1.20465 0.91451 1.09473 0.89060 1.24295 0.80162 0.71586 0.93663 1.90673 1.57344 1.46512 1.48228 1.86491 1.26079 1.83387 1.31574 1.23145 0.96040 1.02259 0.78409 1.21320 0.91039 1.02629 0.97991 1.19455 0.94545 0.97106 0.93646 1.21398 0.91968 1.50497 0.93250 0.94529 1.26005 0.95996 0.94083 1.03167 1.70059 1.10217 1.52262 1.26386 0.85663 0.79448 0.79404 0.78190 1.19036 1.20873 1.17110 1.20439 0.92214 0.98409 1.06535 0.86518 0.91254 0.92029 0.83260 0.83014 0.84210 0.83465 0.84298 0.91544 0.91223 0.91652 0.91833 0.95791 0.95784 0.92395 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.83 10.50 -92.48 -0.97 -7.80 16 3 C 0.11 2.31 6.69 22.50 0.15 2.46 16 4 C -0.21 -3.53 9.04 22.37 0.20 -3.33 16 5 C -0.08 -1.34 10.04 22.26 0.22 -1.12 16 6 C -0.15 -2.73 9.70 22.28 0.22 -2.51 16 7 C -0.05 -0.98 4.37 -19.88 -0.09 -1.06 16 8 C -0.07 -1.18 5.94 29.10 0.17 -1.01 16 9 C 0.46 12.52 7.95 71.23 0.57 13.08 16 10 O -0.54 -18.38 15.78 21.97 0.35 -18.03 16 11 O -0.36 -10.84 10.22 -51.49 -0.53 -11.36 16 12 C 0.07 2.54 5.47 71.98 0.39 2.93 16 13 C -0.09 -3.61 5.53 30.59 0.17 -3.45 16 14 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 15 C -0.53 -30.87 9.66 25.60 0.25 -30.62 16 16 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 17 C 0.00 0.27 5.47 84.65 0.46 0.73 16 18 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 19 Si 0.95 44.45 27.47 68.60 1.88 46.33 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 22 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 23 C -0.16 -3.50 9.64 22.36 0.22 -3.28 16 24 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.52 7.67 -2.39 -0.02 0.50 16 26 H 0.06 0.57 7.65 -2.39 -0.02 0.55 16 27 H 0.15 1.69 6.30 -2.91 -0.02 1.67 16 28 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 29 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.15 1.71 8.08 -2.39 -0.02 1.69 16 31 H 0.14 1.82 8.08 -2.39 -0.02 1.80 16 32 H 0.07 2.25 8.13 -2.39 -0.02 2.23 16 33 H 0.07 2.31 8.13 -2.39 -0.02 2.29 16 34 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 36 H 0.02 1.09 7.20 -2.39 -0.02 1.08 16 37 H 0.02 1.08 7.57 -2.38 -0.02 1.06 16 38 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 39 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -74.29 335.76 6.17 -68.12 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.97 Total: 8.38 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 4.17 Total: -26.22 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.30 Total: -59.41 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -1.15 Total: -37.20 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Total: -74.29 6.17 -68.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730422762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.099 kcal (2) G-P(sol) polarization free energy of solvation -74.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds