Wall clock time and date at job start Tue Mar 31 2020 00:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48495 * 109.46968 * 29.99384 * 3 2 1 6 6 H 1.48499 * 109.47437 * 149.99853 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46901 * 109.46921 * 179.97438 * 13 11 10 15 15 C 1.47839 * 111.00094 * 290.83999 * 14 13 11 16 16 C 1.54910 * 104.79725 * 213.63685 * 15 14 13 17 17 C 1.55136 * 101.65131 * 37.07211 * 16 15 14 18 18 H 1.08999 * 110.70826 * 82.73164 * 17 16 15 19 19 C 1.50702 * 110.70586 * 205.96655 * 17 16 15 20 20 C 1.34520 * 125.78845 * 233.60254 * 19 17 16 21 21 C 1.41378 * 106.83903 * 180.02562 * 20 19 17 22 22 C 1.34511 * 106.84428 * 359.97438 * 21 20 19 23 23 O 1.34300 * 108.41935 * 359.74377 * 22 21 20 24 24 C 1.47445 * 110.99753 * 169.99878 * 14 13 11 25 25 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 27 27 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 28 28 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 29 29 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 30 30 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 31 31 H 1.08995 * 110.37551 * 332.46590 * 15 14 13 32 32 H 1.09005 * 110.37015 * 94.81188 * 15 14 13 33 33 H 1.08999 * 110.99109 * 278.98194 * 16 15 14 34 34 H 1.08998 * 111.02693 * 155.18053 * 16 15 14 35 35 H 1.08000 * 126.57883 * 359.95759 * 20 19 17 36 36 H 1.08000 * 126.57784 * 180.02562 * 21 20 19 37 37 H 1.07998 * 125.78981 * 180.02562 * 22 21 20 38 38 H 1.09000 * 109.88966 * 242.66278 * 24 14 13 39 39 H 1.09004 * 109.88923 * 3.69015 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 7 1.9987 -7.3009 0.0032 15 6 1.3070 -7.5135 1.2924 16 6 1.3491 -9.0458 1.5161 17 6 2.7505 -9.4057 0.9562 18 1 3.5223 -9.2262 1.7047 19 6 2.7849 -10.8371 0.4860 20 6 3.6764 -11.7693 0.8677 21 6 3.3397 -12.9613 0.1861 22 6 2.2624 -12.6865 -0.5709 23 8 1.9271 -11.4000 -0.3807 24 6 2.9088 -8.4364 -0.2341 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 3.1568 -3.4354 0.0021 29 1 3.3612 -5.9713 -0.8858 30 1 3.3585 -5.9707 0.8942 31 1 1.8341 -6.9982 2.0953 32 1 0.2752 -7.1672 1.2310 33 1 0.5626 -9.5448 0.9500 34 1 1.2781 -9.2884 2.5763 35 1 4.4932 -11.6330 1.5609 36 1 3.8493 -13.9107 0.2598 37 1 1.7508 -13.3834 -1.2181 38 1 2.6382 -8.9410 -1.1616 39 1 3.9377 -8.0812 -0.2919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732206163.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:43 Heat of formation + Delta-G solvation = -16.752208 kcal Electronic energy + Delta-G solvation = -20823.722118 eV Core-core repulsion = 17539.951435 eV Total energy + Delta-G solvation = -3283.770683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.79249 -39.52165 -37.95377 -34.14479 -33.37584 -32.79458 -32.27302 -30.05573 -28.40435 -27.50703 -25.74182 -22.61106 -22.26116 -21.80292 -21.08852 -20.14183 -19.61145 -17.64962 -17.22953 -16.14173 -16.00067 -15.87610 -15.22725 -15.01745 -14.84970 -14.09629 -13.95480 -13.63902 -13.42914 -13.03180 -12.90011 -12.85873 -12.39074 -12.11880 -11.91645 -11.78172 -11.75115 -11.34623 -11.17566 -10.97436 -10.90842 -10.79785 -10.30213 -10.12853 -9.38170 -8.99337 -8.71802 -8.66956 -8.18819 -7.82848 -6.15483 -4.22351 1.52193 2.39180 2.77681 3.24640 3.30600 3.32923 3.43416 3.72540 4.25262 4.30187 4.38736 4.53072 4.62765 4.76494 4.84919 5.02965 5.20390 5.21406 5.25355 5.32594 5.45231 5.49739 5.57811 5.62952 5.69507 5.73129 5.85237 5.89463 6.05511 6.23430 6.28920 6.93082 6.96451 6.99666 7.34897 7.48559 7.54695 7.69659 7.98942 8.66825 8.81311 9.16653 9.44548 10.94718 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.059736 B = 0.002646 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.616172 B =10578.866422 C =10748.636285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.716 5.716 11 C 0.498 3.502 12 O -0.538 6.538 13 C 0.029 3.971 14 N -0.507 5.507 15 C 0.048 3.952 16 C -0.123 4.123 17 C -0.033 4.033 18 H 0.105 0.895 19 C 0.010 3.990 20 C -0.216 4.216 21 C -0.215 4.215 22 C -0.044 4.044 23 O -0.169 6.169 24 C 0.050 3.950 25 H 0.266 0.734 26 H 0.026 0.974 27 H 0.025 0.975 28 H 0.389 0.611 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.201 0.799 38 H 0.083 0.917 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.080 -23.146 2.134 24.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.366 5.366 11 C 0.282 3.718 12 O -0.415 6.415 13 C -0.102 4.102 14 N -0.231 5.231 15 C -0.079 4.079 16 C -0.161 4.161 17 C -0.053 4.053 18 H 0.123 0.877 19 C -0.041 4.041 20 C -0.235 4.235 21 C -0.234 4.234 22 C -0.112 4.112 23 O -0.064 6.064 24 C -0.078 4.078 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.221 0.779 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.218 0.782 38 H 0.101 0.899 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.422 -22.947 1.595 24.170 hybrid contribution 1.777 0.749 0.652 2.036 sum 9.199 -22.198 2.247 24.133 Atomic orbital electron populations 1.69974 1.06102 1.27278 1.48921 1.24959 0.94914 0.99448 0.94750 0.86419 0.79594 0.82686 0.78220 1.20457 1.21019 1.19785 1.21232 0.93239 0.90502 1.53146 0.91944 1.19071 0.88282 0.81900 0.97668 1.46443 1.11009 1.06104 1.73040 1.20270 0.89571 0.84018 0.77947 1.90649 1.16598 1.84620 1.49638 1.22297 0.95478 0.89961 1.02509 1.63306 1.26411 1.00083 1.33338 1.23118 1.01696 0.94073 0.88999 1.22858 0.95486 0.96435 1.01324 1.21064 0.99998 0.86178 0.98030 0.87700 1.22114 0.91689 0.95637 0.94633 1.21590 1.03006 0.93070 1.05833 1.21809 1.00033 1.00004 1.01603 1.24042 0.99543 0.83688 1.03922 1.84042 1.47682 1.23383 1.51305 1.22950 0.95929 0.90956 0.97970 0.92456 0.95569 0.95657 0.77890 0.88364 0.92269 0.93576 0.88361 0.89946 0.90336 0.83643 0.83610 0.78205 0.89880 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.71 5.43 -5.19 -0.03 6.68 16 10 N -0.72 -15.06 5.55 -61.47 -0.34 -15.40 16 11 C 0.50 9.96 7.63 -10.98 -0.08 9.88 16 12 O -0.54 -13.01 15.04 5.56 0.08 -12.92 16 13 C 0.03 0.42 5.05 -4.97 -0.03 0.39 16 14 N -0.51 -7.33 4.86 -232.69 -1.13 -8.46 16 15 C 0.05 0.66 5.74 -2.30 -0.01 0.65 16 16 C -0.12 -1.34 6.51 -24.59 -0.16 -1.50 16 17 C -0.03 -0.33 3.39 -89.95 -0.31 -0.64 16 18 H 0.10 0.85 8.13 -51.93 -0.42 0.43 16 19 C 0.01 0.11 5.79 -35.62 -0.21 -0.10 16 20 C -0.22 -2.03 10.80 -39.70 -0.43 -2.46 16 21 C -0.22 -1.85 10.91 -39.71 -0.43 -2.28 16 22 C -0.04 -0.38 12.09 29.41 0.36 -0.03 16 23 O -0.17 -1.90 10.47 5.71 0.06 -1.84 16 24 C 0.05 0.56 6.45 -2.83 -0.02 0.54 16 25 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.39 6.93 8.32 -40.82 -0.34 6.59 16 29 H 0.10 1.22 8.03 -51.93 -0.42 0.80 16 30 H 0.06 0.72 7.85 -51.93 -0.41 0.31 16 31 H 0.05 0.60 7.62 -51.93 -0.40 0.21 16 32 H 0.10 1.61 7.38 -51.93 -0.38 1.23 16 33 H 0.08 0.98 7.92 -51.93 -0.41 0.57 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.20 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.08 1.01 7.78 -51.93 -0.40 0.61 16 39 H 0.06 0.58 7.55 -51.93 -0.39 0.19 16 LS Contribution 329.67 15.07 4.97 4.97 Total: -1.00 -33.45 329.67 -8.05 -41.50 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.64 Total: 4.07 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.76 Total: -2.28 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.74 Total: -49.35 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.14 Total: -14.76 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.45 -8.05 -41.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732206163.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.750 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds