Wall clock time and date at job start Tue Mar 31 2020 00:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48495 * 109.46968 * 29.99384 * 3 2 1 6 6 H 1.48499 * 109.47437 * 149.99853 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46901 * 109.46921 * 179.97438 * 13 11 10 15 15 C 1.47839 * 111.00094 * 290.83999 * 14 13 11 16 16 C 1.54910 * 104.79725 * 213.63685 * 15 14 13 17 17 C 1.55136 * 101.65131 * 37.07211 * 16 15 14 18 18 H 1.08999 * 110.70826 * 82.73164 * 17 16 15 19 19 C 1.50702 * 110.70586 * 205.96655 * 17 16 15 20 20 C 1.34520 * 125.78845 * 233.60254 * 19 17 16 21 21 C 1.41378 * 106.83903 * 180.02562 * 20 19 17 22 22 C 1.34511 * 106.84428 * 359.97438 * 21 20 19 23 23 O 1.34300 * 108.41935 * 359.74377 * 22 21 20 24 24 C 1.47445 * 110.99753 * 169.99878 * 14 13 11 25 25 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 27 27 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 28 28 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 29 29 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 30 30 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 31 31 H 1.08995 * 110.37551 * 332.46590 * 15 14 13 32 32 H 1.09005 * 110.37015 * 94.81188 * 15 14 13 33 33 H 1.08999 * 110.99109 * 278.98194 * 16 15 14 34 34 H 1.08998 * 111.02693 * 155.18053 * 16 15 14 35 35 H 1.08000 * 126.57883 * 359.95759 * 20 19 17 36 36 H 1.08000 * 126.57784 * 180.02562 * 21 20 19 37 37 H 1.07998 * 125.78981 * 180.02562 * 22 21 20 38 38 H 1.09000 * 109.88966 * 242.66278 * 24 14 13 39 39 H 1.09004 * 109.88923 * 3.69015 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 7 1.9987 -7.3009 0.0032 15 6 1.3070 -7.5135 1.2924 16 6 1.3491 -9.0458 1.5161 17 6 2.7505 -9.4057 0.9562 18 1 3.5223 -9.2262 1.7047 19 6 2.7849 -10.8371 0.4860 20 6 3.6764 -11.7693 0.8677 21 6 3.3397 -12.9613 0.1861 22 6 2.2624 -12.6865 -0.5709 23 8 1.9271 -11.4000 -0.3807 24 6 2.9088 -8.4364 -0.2341 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 3.1568 -3.4354 0.0021 29 1 3.3612 -5.9713 -0.8858 30 1 3.3585 -5.9707 0.8942 31 1 1.8341 -6.9982 2.0953 32 1 0.2752 -7.1672 1.2310 33 1 0.5626 -9.5448 0.9500 34 1 1.2781 -9.2884 2.5763 35 1 4.4932 -11.6330 1.5609 36 1 3.8493 -13.9107 0.2598 37 1 1.7508 -13.3834 -1.2181 38 1 2.6382 -8.9410 -1.1616 39 1 3.9377 -8.0812 -0.2919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732206163.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:43 Heat of formation + Delta-G solvation = -41.534578 kcal Electronic energy + Delta-G solvation = -20824.796762 eV Core-core repulsion = 17539.951435 eV Total energy + Delta-G solvation = -3284.845327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.48185 -40.85218 -39.30876 -36.09187 -34.36888 -34.17998 -33.60949 -30.99600 -29.83368 -28.77974 -27.11172 -24.49779 -23.06300 -22.52273 -22.24488 -21.27431 -20.86848 -18.99503 -18.34512 -17.60526 -17.28886 -16.84690 -16.65058 -16.46822 -16.18659 -15.66523 -15.05070 -14.77888 -14.51764 -14.38870 -13.99340 -13.89412 -13.67053 -13.51211 -13.28488 -13.02095 -12.88288 -12.72090 -12.58046 -12.41501 -12.21749 -12.11462 -11.79542 -11.47672 -10.79737 -10.79516 -10.66334 -9.79292 -9.40217 -9.19157 -8.28514 -6.45255 0.83421 1.43373 1.46009 1.57149 1.74840 1.83331 2.13959 2.29562 2.48967 3.06245 3.10048 3.54674 3.64127 3.74888 4.02560 4.14643 4.23109 4.24905 4.28623 4.36615 4.42741 4.47996 4.62600 4.85331 4.92421 4.96237 5.04980 5.09768 5.13093 5.20867 5.25488 5.26699 5.50623 5.66833 5.70965 5.86051 5.93003 6.01259 6.28638 6.66446 6.98178 7.24582 7.56812 8.83755 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.059736 B = 0.002646 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.616172 B =10578.866422 C =10748.636285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.269 3.731 10 N -0.710 5.710 11 C 0.492 3.508 12 O -0.587 6.587 13 C 0.044 3.956 14 N -0.537 5.537 15 C 0.049 3.951 16 C -0.115 4.115 17 C -0.022 4.022 18 H 0.131 0.869 19 C -0.013 4.013 20 C -0.215 4.215 21 C -0.225 4.225 22 C -0.051 4.051 23 O -0.195 6.195 24 C 0.053 3.947 25 H 0.268 0.732 26 H -0.017 1.017 27 H -0.014 1.014 28 H 0.408 0.592 29 H 0.127 0.873 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.229 0.771 38 H 0.069 0.931 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.545 -23.975 2.558 27.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.145 3.855 10 N -0.361 5.361 11 C 0.279 3.721 12 O -0.467 6.467 13 C -0.087 4.087 14 N -0.262 5.262 15 C -0.079 4.079 16 C -0.153 4.153 17 C -0.041 4.041 18 H 0.149 0.851 19 C -0.064 4.064 20 C -0.234 4.234 21 C -0.244 4.244 22 C -0.117 4.117 23 O -0.092 6.092 24 C -0.074 4.074 25 H 0.077 0.923 26 H 0.001 0.999 27 H 0.003 0.997 28 H 0.244 0.756 29 H 0.145 0.855 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.182 0.818 36 H 0.185 0.815 37 H 0.246 0.754 38 H 0.087 0.913 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.945 -23.815 2.018 26.288 hybrid contribution 0.626 0.892 0.489 1.194 sum 11.572 -22.924 2.507 25.801 Atomic orbital electron populations 1.70145 1.08337 1.28538 1.50069 1.26100 0.95782 1.04013 0.93913 0.85142 0.78507 0.76888 0.78582 1.19645 1.21036 1.17762 1.21632 0.94342 0.90543 1.52725 0.89685 1.18487 0.88705 0.84433 0.93829 1.46173 1.11128 1.05469 1.73378 1.21408 0.90039 0.84786 0.75839 1.90635 1.19363 1.85328 1.51414 1.22222 0.93788 0.87257 1.05407 1.63134 1.28037 1.01072 1.33940 1.22986 0.99562 0.96104 0.89212 1.22760 0.96143 0.94025 1.02337 1.21041 0.99557 0.85776 0.97771 0.85097 1.22250 0.92444 0.96081 0.95579 1.21926 1.02923 0.92996 1.05579 1.22168 1.00140 1.00761 1.01350 1.24739 0.99781 0.83160 1.04064 1.84029 1.48540 1.24638 1.51949 1.22917 0.96456 0.89978 0.98022 0.92291 0.99868 0.99652 0.75597 0.85545 0.88783 0.92736 0.92457 0.91740 0.88421 0.81826 0.81490 0.75443 0.91280 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 2 C 0.00 0.07 5.46 84.66 0.46 0.54 16 3 Si 0.99 42.40 29.54 68.60 2.03 44.43 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 7 C -0.55 -30.29 9.28 25.60 0.24 -30.05 16 8 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.27 14.94 5.43 85.63 0.46 15.40 16 10 N -0.71 -30.03 5.55 -466.78 -2.59 -32.62 16 11 C 0.49 19.89 7.63 87.66 0.67 20.56 16 12 O -0.59 -29.90 15.04 -3.03 -0.05 -29.94 16 13 C 0.04 1.18 5.05 85.56 0.43 1.61 16 14 N -0.54 -15.06 4.86 -890.08 -4.33 -19.39 16 15 C 0.05 1.35 5.74 86.78 0.50 1.84 16 16 C -0.11 -2.42 6.51 31.98 0.21 -2.22 16 17 C -0.02 -0.39 3.39 -10.36 -0.04 -0.43 16 18 H 0.13 1.62 8.13 -2.39 -0.02 1.60 16 19 C -0.01 -0.26 5.79 24.83 0.14 -0.11 16 20 C -0.22 -3.51 10.80 22.19 0.24 -3.27 16 21 C -0.23 -3.34 10.91 22.19 0.24 -3.09 16 22 C -0.05 -0.79 12.09 66.97 0.81 0.02 16 23 O -0.19 -4.24 10.47 -2.47 -0.03 -4.27 16 24 C 0.05 1.09 6.45 86.65 0.56 1.65 16 25 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 26 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 27 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 28 H 0.41 13.91 8.32 -92.71 -0.77 13.14 16 29 H 0.13 2.70 8.03 -2.39 -0.02 2.68 16 30 H 0.09 1.92 7.85 -2.39 -0.02 1.90 16 31 H 0.05 1.38 7.62 -2.39 -0.02 1.36 16 32 H 0.06 2.03 7.38 -2.38 -0.02 2.01 16 33 H 0.06 1.58 7.92 -2.39 -0.02 1.56 16 34 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 37 H 0.23 1.82 8.06 -2.91 -0.02 1.79 16 38 H 0.07 1.61 7.78 -2.39 -0.02 1.59 16 39 H 0.09 1.33 7.55 -2.38 -0.02 1.32 16 Total: -1.00 -77.12 329.67 0.53 -76.59 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.28 Total: 19.33 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 4.93 Total: 2.45 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -6.63 Total: -108.59 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.07 Total: -34.21 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -77.12 0.53 -76.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732206163.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.051 kcal (2) G-P(sol) polarization free energy of solvation -77.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds